FC877839

Overview
NameFC877839
Unique NameFC877839
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length867
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC877839 vs. ExPASy Swiss-Prot
Match: KIN11_ARATH (SNF1-related protein kinase catalytic subunit alpha KIN11 OS=Arabidopsis thaliana GN=KIN11 PE=1 SV=1)

HSP 1 Score: 235.728 bits (600), Expect = 2.538e-61
Identity = 120/252 (47.62%), Postives = 160/252 (63.49%), Query Frame = 3
Query:  114 ALFGKYELGKLLGCGAFAKVYHARDVLNGRSVAVKVINKNKIMSSNLVSNIKREISIMRRLNHPHIVKLYEVLATKSKIYCVMEFVKGGELFAKIA-KGRFSEDLSRKYFQQLISAVGYCHSRGVFHRDLKPENLLLDENGNLKVSDFGLSAVKDQIRTDGLLHTLCGTPAYVAPEILSKKGYDGAKVDLWSCGVILFVLTAGYLPFNDPNLMSMYKKIYKGEFRCPKWMXXXXXXXXXXXXXTNPETRITV 866
            ++   Y+LGK LG G+F KV  A  V+ G  VA+K++N+ KI +  +   ++REI I+R   HPHI++ YEV+ T S IY VME+VK GELF  I  KGR  ED +R +FQQ+IS V YCH   V HRDLKPENLLLD   N+K++DFGLS V   +R    L T CG+P Y APE++S K Y G +VD+WSCGVIL+ L  G LPF+D N+ +++KKI  G +  P  +              +P  RIT+
Sbjct:   15 SILPNYKLGKTLGIGSFGKVKIAEHVVTGHKVAIKILNRRKIKNMEMEEKVRREIKILRLFMHPHIIRQYEVIETTSDIYVVMEYVKSGELFDYIVEKGRLQEDEARNFFQQIISGVEYCHRNMVVHRDLKPENLLLDSRCNIKIADFGLSNV---MRDGHFLKTSCGSPNYAAPEVISGKLYAGPEVDVWSCGVILYALLCGTLPFDDENIPNLFKKIKGGIYTLPSHLSSEARDLIPRMLIVDPVKRITI 263          
BLAST of FC877839 vs. ExPASy Swiss-Prot
Match: KIN10_ARATH (SNF1-related protein kinase catalytic subunit alpha KIN10 OS=Arabidopsis thaliana GN=KIN10 PE=1 SV=2)

HSP 1 Score: 231.106 bits (588), Expect = 6.251e-60
Identity = 115/252 (45.63%), Postives = 159/252 (63.10%), Query Frame = 3
Query:  114 ALFGKYELGKLLGCGAFAKVYHARDVLNGRSVAVKVINKNKIMSSNLVSNIKREISIMRRLNHPHIVKLYEVLATKSKIYCVMEFVKGGELFAKIA-KGRFSEDLSRKYFQQLISAVGYCHSRGVFHRDLKPENLLLDENGNLKVSDFGLSAVKDQIRTDGLLHTLCGTPAYVAPEILSKKGYDGAKVDLWSCGVILFVLTAGYLPFNDPNLMSMYKKIYKGEFRCPKWMXXXXXXXXXXXXXTNPETRITV 866
            ++   Y+LG+ LG G+F +V  A   L G  VA+K++N+ KI +  +   ++REI I+R   HPHI++LYEV+ T + IY VME+V  GELF  I  KGR  ED +R +FQQ+IS V YCH   V HRDLKPENLLLD   N+K++DFGLS +   +R    L T CG+P Y APE++S K Y G +VD+WSCGVIL+ L  G LPF+D N+ +++KKI  G +  P  +              +P  R+T+
Sbjct:   37 SILPNYKLGRTLGIGSFGRVKIAEHALTGHKVAIKILNRRKIKNMEMEEKVRREIKILRLFMHPHIIRLYEVIETPTDIYLVMEYVNSGELFDYIVEKGRLQEDEARNFFQQIISGVEYCHRNMVVHRDLKPENLLLDSKCNVKIADFGLSNI---MRDGHFLKTSCGSPNYAAPEVISGKLYAGPEVDVWSCGVILYALLCGTLPFDDENIPNLFKKIKGGIYTLPSHLSPGARDLIPRMLVVDPMKRVTI 285          
BLAST of FC877839 vs. ExPASy Swiss-Prot
Match: AAPK2_PONAB (5'-AMP-activated protein kinase catalytic subunit alpha-2 OS=Pongo abelii GN=PRKAA2 PE=2 SV=1)

HSP 1 Score: 223.787 bits (569), Expect = 9.980e-58
Identity = 117/250 (46.80%), Postives = 158/250 (63.20%), Query Frame = 3
Query:  123 GKYELGKLLGCGAFAKVYHARDVLNGRSVAVKVINKNKIMSSNLVSNIKREISIMRRLNHPHIVKLYEVLATKSKIYCVMEFVKGGELFAKIAK-GRFSEDLSRKYFQQLISAVGYCHSRGVFHRDLKPENLLLDENGNLKVSDFGLSAVKDQIRTDG-LLHTLCGTPAYVAPEILSKKGYDGAKVDLWSCGVILFVLTAGYLPFNDPNLMSMYKKIYKGEFRCPKWMXXXXXXXXXXXXXTNPETRITV 866
            G Y LG  LG G F KV      L G  VAVK++N+ KI S ++V  IKREI  ++   HPHI+KLY+V++T +  + VME+V GGELF  I K GR  E  +R+ FQQ++SAV YCH   V HRDLKPEN+LLD + N K++DFGLS     I +DG  L T CG+P Y APE++S + Y G +VD+WSCGVIL+ L  G LPF+D ++ +++KKI  G F  P+++              +P  R T+
Sbjct:   14 GHYVLGDTLGVGTFGKVKIGEHQLTGHKVAVKILNRQKIRSLDVVGKIKREIQNLKLFRHPHIIKLYQVISTPTDFFMVMEYVSGGELFDYICKHGRVEEMEARRLFQQILSAVDYCHRHMVVHRDLKPENVLLDAHMNAKIADFGLS----NIMSDGEFLRTSCGSPNYAAPEVISGRLYAGPEVDIWSCGVILYALLCGTLPFDDEHVPTLFKKIRGGVFYIPEYLNRSVATLLMHMLQVDPLKRATI 259          
BLAST of FC877839 vs. ExPASy Swiss-Prot
Match: AAPK2_HUMAN (5'-AMP-activated protein kinase catalytic subunit alpha-2 OS=Homo sapiens GN=PRKAA2 PE=1 SV=2)

HSP 1 Score: 222.631 bits (566), Expect = 2.223e-57
Identity = 116/250 (46.40%), Postives = 158/250 (63.20%), Query Frame = 3
Query:  123 GKYELGKLLGCGAFAKVYHARDVLNGRSVAVKVINKNKIMSSNLVSNIKREISIMRRLNHPHIVKLYEVLATKSKIYCVMEFVKGGELFAKIAK-GRFSEDLSRKYFQQLISAVGYCHSRGVFHRDLKPENLLLDENGNLKVSDFGLSAVKDQIRTDG-LLHTLCGTPAYVAPEILSKKGYDGAKVDLWSCGVILFVLTAGYLPFNDPNLMSMYKKIYKGEFRCPKWMXXXXXXXXXXXXXTNPETRITV 866
            G Y LG  LG G F KV      L G  VAVK++N+ KI S ++V  IKREI  ++   HPHI+KLY+V++T +  + VME+V GGELF  I K GR  E  +R+ FQQ++SAV YCH   V HRDLKPEN+LLD + N K++DFGLS     + +DG  L T CG+P Y APE++S + Y G +VD+WSCGVIL+ L  G LPF+D ++ +++KKI  G F  P+++              +P  R T+
Sbjct:   14 GHYVLGDTLGVGTFGKVKIGEHQLTGHKVAVKILNRQKIRSLDVVGKIKREIQNLKLFRHPHIIKLYQVISTPTDFFMVMEYVSGGELFDYICKHGRVEEMEARRLFQQILSAVDYCHRHMVVHRDLKPENVLLDAHMNAKIADFGLS----NMMSDGEFLRTSCGSPNYAAPEVISGRLYAGPEVDIWSCGVILYALLCGTLPFDDEHVPTLFKKIRGGVFYIPEYLNRSVATLLMHMLQVDPLKRATI 259          
BLAST of FC877839 vs. ExPASy Swiss-Prot
Match: SNF1_CANTR (Carbon catabolite-derepressing protein kinase OS=Candida tropicalis GN=SNF1 PE=3 SV=1)

HSP 1 Score: 222.246 bits (565), Expect = 2.904e-57
Identity = 118/261 (45.21%), Postives = 169/261 (64.75%), Query Frame = 3
Query:   90 NPRAQAANALFGKYELGKLLGCGAFAKVYHARDVLNGRSVAVKVINKNKIMSSNLVSNIKREISIMRRLNHPHIVKLYEVLATKSKIYCVMEFVKGGELFAKIA-KGRFSEDLSRKYFQQLISAVGYCHSRGVFHRDLKPENLLLDENGNLKVSDFGLSAVKDQIRTDG-LLHTLCGTPAYVAPEILSKKGYDGAKVDLWSCGVILFVLTAGYLPFNDPNLMSMYKKIYKGEFRCPKWMXXXXXXXXXXXXXTNPETRITV 866
            +P    AN + G+Y++ K LG G+F KV  A+ V  G+ VA+K+IN+  +  S++   ++REIS +R L HPHI+KLY+V+ +K +I  V+EF  G ELF  I  +G+  ED +R++FQQ+I+AV YCH   + HRDLKPENLLLD+  N+K++DFGLS     I TDG  L T CG+P Y APE++S K Y G +VD+WS GVIL+V+  G LPF+D  + +++KKI  G +  P ++              NP  RIT+
Sbjct:   40 DPNVNPANRI-GRYQIIKTLGEGSFGKVKLAQHVGTGQKVALKIINRKTLAKSDMQGRVEREISYLRLLRHPHIIKLYDVIKSKDEIIMVIEFA-GKELFDYIVQRGKMPEDEARRFFQQIIAAVEYCHRHKIVHRDLKPENLLLDDQLNVKIADFGLS----NIMTDGNFLKTSCGSPNYAAPEVISGKLYAGPEVDVWSSGVILYVMLCGRLPFDDEFIPALFKKISNGVYTLPNYLSPGAKHLLTRMLVVNPLNRITI 294          
BLAST of FC877839 vs. ExPASy Swiss-Prot
Match: AAPK2_RAT (5'-AMP-activated protein kinase catalytic subunit alpha-2 OS=Rattus norvegicus GN=Prkaa2 PE=1 SV=1)

HSP 1 Score: 222.246 bits (565), Expect = 2.904e-57
Identity = 116/250 (46.40%), Postives = 157/250 (62.80%), Query Frame = 3
Query:  123 GKYELGKLLGCGAFAKVYHARDVLNGRSVAVKVINKNKIMSSNLVSNIKREISIMRRLNHPHIVKLYEVLATKSKIYCVMEFVKGGELFAKIAK-GRFSEDLSRKYFQQLISAVGYCHSRGVFHRDLKPENLLLDENGNLKVSDFGLSAVKDQIRTDG-LLHTLCGTPAYVAPEILSKKGYDGAKVDLWSCGVILFVLTAGYLPFNDPNLMSMYKKIYKGEFRCPKWMXXXXXXXXXXXXXTNPETRITV 866
            G Y LG  LG G F KV      L G  VAVK++N+ KI S ++V  IKREI  ++   HPHI+KLY+V++T +  + VME+V GGELF  I K GR  E  +R+ FQQ++SAV YCH   V HRDLKPEN+LLD   N K++DFGLS     + +DG  L T CG+P Y APE++S + Y G +VD+WSCGVIL+ L  G LPF+D ++ +++KKI  G F  P+++              +P  R T+
Sbjct:   14 GHYVLGDTLGVGTFGKVKIGEHQLTGHKVAVKILNRQKIRSLDVVGKIKREIQNLKLFRHPHIIKLYQVISTPTDFFMVMEYVSGGELFDYICKHGRVEEVEARRLFQQILSAVDYCHRHMVVHRDLKPENVLLDAQMNAKIADFGLS----NMMSDGEFLRTSCGSPNYAAPEVISGRLYAGPEVDIWSCGVILYALLCGTLPFDDEHVPTLFKKIRGGVFYIPEYLNRSIATLLMHMLQVDPLKRATI 259          
BLAST of FC877839 vs. ExPASy Swiss-Prot
Match: AAPK2_PIG (5'-AMP-activated protein kinase catalytic subunit alpha-2 OS=Sus scrofa GN=PRKAA2 PE=2 SV=2)

HSP 1 Score: 222.246 bits (565), Expect = 2.904e-57
Identity = 116/250 (46.40%), Postives = 157/250 (62.80%), Query Frame = 3
Query:  123 GKYELGKLLGCGAFAKVYHARDVLNGRSVAVKVINKNKIMSSNLVSNIKREISIMRRLNHPHIVKLYEVLATKSKIYCVMEFVKGGELFAKIAK-GRFSEDLSRKYFQQLISAVGYCHSRGVFHRDLKPENLLLDENGNLKVSDFGLSAVKDQIRTDG-LLHTLCGTPAYVAPEILSKKGYDGAKVDLWSCGVILFVLTAGYLPFNDPNLMSMYKKIYKGEFRCPKWMXXXXXXXXXXXXXTNPETRITV 866
            G Y LG  LG G F KV      L G  VAVK++N+ KI S ++V  IKREI  ++   HPHI+KLY+V++T +  + VME+V GGELF  I K GR  E  +R+ FQQ++SAV YCH   V HRDLKPEN+LLD   N K++DFGLS     + +DG  L T CG+P Y APE++S + Y G +VD+WSCGVIL+ L  G LPF+D ++ +++KKI  G F  P+++              +P  R T+
Sbjct:   14 GHYVLGDTLGVGTFGKVKIGEHQLTGHKVAVKILNRQKIRSLDVVGKIKREIQNLKLFRHPHIIKLYQVISTPTDFFMVMEYVSGGELFDYICKHGRVEEMEARRLFQQILSAVDYCHRHMVVHRDLKPENVLLDAQMNAKIADFGLS----NMMSDGEFLRTSCGSPNYAAPEVISGRLYAGPEVDIWSCGVILYALLCGTLPFDDEHVPTLFKKIRGGVFYIPEYLNRSVATLLMHMLQVDPLKRATI 259          
BLAST of FC877839 vs. ExPASy Swiss-Prot
Match: AAPK1_RAT (5'-AMP-activated protein kinase catalytic subunit alpha-1 OS=Rattus norvegicus GN=Prkaa1 PE=1 SV=2)

HSP 1 Score: 221.861 bits (564), Expect = 3.792e-57
Identity = 116/250 (46.40%), Postives = 158/250 (63.20%), Query Frame = 3
Query:  123 GKYELGKLLGCGAFAKVYHARDVLNGRSVAVKVINKNKIMSSNLVSNIKREISIMRRLNHPHIVKLYEVLATKSKIYCVMEFVKGGELFAKIAK-GRFSEDLSRKYFQQLISAVGYCHSRGVFHRDLKPENLLLDENGNLKVSDFGLSAVKDQIRTDG-LLHTLCGTPAYVAPEILSKKGYDGAKVDLWSCGVILFVLTAGYLPFNDPNLMSMYKKIYKGEFRCPKWMXXXXXXXXXXXXXTNPETRITV 866
            G Y LG  LG G F KV   +  L G  VAVK++N+ KI S ++V  I+REI  ++   HPHI+KLY+V++T S I+ VME+V GGELF  I K GR  E  SR+ FQQ++S V YCH   V HRDLKPEN+LLD + N K++DFGLS     + +DG  L T CG+P Y APE++S + Y G +VD+WS GVIL+ L  G LPF+D ++ +++KKI  G F  P+++              +P  R T+
Sbjct:   25 GHYILGDTLGVGTFGKVKVGKHELTGHKVAVKILNRQKIRSLDVVGKIRREIQNLKLFRHPHIIKLYQVISTPSDIFMVMEYVSGGELFDYICKNGRLDEKESRRLFQQILSGVDYCHRHMVVHRDLKPENVLLDAHMNAKIADFGLS----NMMSDGEFLRTSCGSPNYAAPEVISGRLYAGPEVDIWSSGVILYALLCGTLPFDDDHVPTLFKKICDGIFYTPQYLNPSVISLLKHMLQVDPMKRATI 270          
BLAST of FC877839 vs. ExPASy Swiss-Prot
Match: AAPK1_PONAB (5'-AMP-activated protein kinase catalytic subunit alpha-1 (Fragment) OS=Pongo abelii GN=PRKAA1 PE=2 SV=2)

HSP 1 Score: 221.861 bits (564), Expect = 3.792e-57
Identity = 116/250 (46.40%), Postives = 158/250 (63.20%), Query Frame = 3
Query:  123 GKYELGKLLGCGAFAKVYHARDVLNGRSVAVKVINKNKIMSSNLVSNIKREISIMRRLNHPHIVKLYEVLATKSKIYCVMEFVKGGELFAKIAK-GRFSEDLSRKYFQQLISAVGYCHSRGVFHRDLKPENLLLDENGNLKVSDFGLSAVKDQIRTDG-LLHTLCGTPAYVAPEILSKKGYDGAKVDLWSCGVILFVLTAGYLPFNDPNLMSMYKKIYKGEFRCPKWMXXXXXXXXXXXXXTNPETRITV 866
            G Y LG  LG G F KV   +  L G  VAVK++N+ KI S ++V  I+REI  ++   HPHI+KLY+V++T S I+ VME+V GGELF  I K GR  E  SR+ FQQ++S V YCH   V HRDLKPEN+LLD + N K++DFGLS     + +DG  L T CG+P Y APE++S + Y G +VD+WS GVIL+ L  G LPF+D ++ +++KKI  G F  P+++              +P  R T+
Sbjct:   20 GHYILGDTLGVGTFGKVKVGKHELTGHKVAVKILNRQKIRSLDVVGKIRREIQNLKLFRHPHIIKLYQVISTPSDIFMVMEYVSGGELFDYICKNGRLDEKESRRLFQQILSGVDYCHRHMVVHRDLKPENVLLDAHMNAKIADFGLS----NMMSDGEFLRTSCGSPNYAAPEVISGRLYAGPEVDIWSSGVILYALLCGTLPFDDDHVPTLFKKICDGIFYTPQYLNPSVISLLKHMLQVDPMKRATI 265          
BLAST of FC877839 vs. ExPASy Swiss-Prot
Match: AAPK1_HUMAN (5'-AMP-activated protein kinase catalytic subunit alpha-1 OS=Homo sapiens GN=PRKAA1 PE=1 SV=4)

HSP 1 Score: 221.861 bits (564), Expect = 3.792e-57
Identity = 116/250 (46.40%), Postives = 158/250 (63.20%), Query Frame = 3
Query:  123 GKYELGKLLGCGAFAKVYHARDVLNGRSVAVKVINKNKIMSSNLVSNIKREISIMRRLNHPHIVKLYEVLATKSKIYCVMEFVKGGELFAKIAK-GRFSEDLSRKYFQQLISAVGYCHSRGVFHRDLKPENLLLDENGNLKVSDFGLSAVKDQIRTDG-LLHTLCGTPAYVAPEILSKKGYDGAKVDLWSCGVILFVLTAGYLPFNDPNLMSMYKKIYKGEFRCPKWMXXXXXXXXXXXXXTNPETRITV 866
            G Y LG  LG G F KV   +  L G  VAVK++N+ KI S ++V  I+REI  ++   HPHI+KLY+V++T S I+ VME+V GGELF  I K GR  E  SR+ FQQ++S V YCH   V HRDLKPEN+LLD + N K++DFGLS     + +DG  L T CG+P Y APE++S + Y G +VD+WS GVIL+ L  G LPF+D ++ +++KKI  G F  P+++              +P  R T+
Sbjct:   25 GHYILGDTLGVGTFGKVKVGKHELTGHKVAVKILNRQKIRSLDVVGKIRREIQNLKLFRHPHIIKLYQVISTPSDIFMVMEYVSGGELFDYICKNGRLDEKESRRLFQQILSGVDYCHRHMVVHRDLKPENVLLDAHMNAKIADFGLS----NMMSDGEFLRTSCGSPNYAAPEVISGRLYAGPEVDIWSSGVILYALLCGTLPFDDDHVPTLFKKICDGIFYTPQYLNPSVISLLKHMLQVDPMKRATI 270          
The following BLAST results are available for this feature:
BLAST of FC877839 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
KIN11_ARATH2.538e-6147.62SNF1-related protein kinase catalytic subunit alph... [more]
KIN10_ARATH6.251e-6045.63SNF1-related protein kinase catalytic subunit alph... [more]
AAPK2_PONAB9.980e-5846.805'-AMP-activated protein kinase catalytic subunit ... [more]
AAPK2_HUMAN2.223e-5746.405'-AMP-activated protein kinase catalytic subunit ... [more]
SNF1_CANTR2.904e-5745.21Carbon catabolite-derepressing protein kinase OS=C... [more]
AAPK2_RAT2.904e-5746.405'-AMP-activated protein kinase catalytic subunit ... [more]
AAPK2_PIG2.904e-5746.405'-AMP-activated protein kinase catalytic subunit ... [more]
AAPK1_RAT3.792e-5746.405'-AMP-activated protein kinase catalytic subunit ... [more]
AAPK1_PONAB3.792e-5746.405'-AMP-activated protein kinase catalytic subunit ... [more]
AAPK1_HUMAN3.792e-5746.405'-AMP-activated protein kinase catalytic subunit ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionIC0AAA65DB09RM1 IVIA1 Citrus clementina cDNA clone IC0AAA65DB09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877839 ID=FC877839; Name=FC877839; organism=Citrus clementina; type=EST; length=867bp
ATTTTTATTCTTCGTTAGCTTTGTCATCTTCATCGCCTCAGGTTCGATCT
CTGGTTATGTCAGAGATCGAACGACACAATGTTTCAGAAAATCCTCGCGC
CCAGGCCGCCAATGCCTTGTTCGGGAAGTACGAGCTGGGCAAGCTCCTGG
GCTGCGGGGCCTTTGCTAAAGTCTATCACGCGCGCGACGTCCTCAACGGA
CGCAGCGTCGCAGTCAAAGTGATTAACAAGAACAAGATCATGTCCTCCAA
TTTAGTCTCCAACATCAAGCGAGAAATCTCCATCATGCGCCGTTTGAACC
ACCCTCACATCGTCAAGCTCTACGAGGTCTTAGCCACCAAGTCCAAGATT
TACTGCGTCATGGAGTTCGTCAAAGGCGGCGAGCTCTTCGCGAAGATCGC
CAAAGGCCGGTTCAGCGAAGACCTTAGCCGCAAGTACTTCCAGCAACTCA
TATCCGCCGTCGGATATTGCCACTCGCGCGGAGTCTTCCACCGCGACTTG
AAGCCGGAGAACCTTTTGCTGGACGAGAACGGGAATTTAAAAGTCTCGGA
TTTCGGACTCAGCGCCGTGAAGGATCAGATTCGTACGGACGGGCTGTTGC
ACACGCTTTGTGGGACCCCTGCTTACGTGGCACCGGAGATTTTGTCTAAG
AAGGGATACGATGGAGCTAAGGTCGACTTGTGGTCATGCGGCGTCATTTT
GTTCGTATTGACGGCAGGTTACCTGCCGTTTAACGATCCGAATTTGATGA
GCATGTATAAGAAGATATATAAAGGTGAATTTCGGTGCCCTAAATGGATG
TCTAGCGATCTGAGACGGCTTTTGTCGCGACTTCTTGATACAAATCCAGA
GACGAGGATCACCGTTG
back to top