FC877840

Overview
NameFC877840
Unique NameFC877840
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length924
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC877840 vs. ExPASy Swiss-Prot
Match: AQPZ2_AGRT5 (Aquaporin Z 2 OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=aqpZ2 PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.769e-23
Identity = 70/193 (36.27%), Postives = 97/193 (50.26%), Query Frame = 2
Query:  314 GVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVG--LVKAFQKSYYTRYGGGANELAD----GYSTGVGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAA 874
            G+G  G+A AFG  +  + Y   GISGGH NPAV+ GL +A +      V Y++AQ  GAI       V A  K+     G  +N   +    GYS    L  EII T   +  +  +T  +  A        AP+ IG A+ ++HL +IP+T T +NPARS G A ++    A    WLFW+ P +G A  A
Sbjct:   33 GIGFTGVALAFGLTVLTMAYAVGGISGGHFNPAVSVGLTVAGRFPASSLVPYVIAQVAGAIVAAAALYVIATGKAGIDLGGFASNGYGEHSPGGYSLVSALLIEIILTAFFLIVILGSTHGRVPAG------FAPIAIGLALTLIHLISIPVTNTSVNPARSTGQA-LFVGGWALQQLWLFWLAPIVGGAAGA 218          
BLAST of FC877840 vs. ExPASy Swiss-Prot
Match: AQP6_HUMAN (Aquaporin-6 OS=Homo sapiens GN=AQP6 PE=2 SV=2)

HSP 1 Score: 109.383 bits (272), Expect = 3.017e-23
Identity = 69/190 (36.32%), Postives = 99/190 (52.11%), Query Frame = 2
Query:  323 ILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHNFI 892
            +L IA  F  +  + V  T   SG H NPAVT    +   +SL RAV Y+ AQ +GA  G  L+         R   G N + +  STG  +A E++ T  LV  VF++TD ++++            IG +V + HL  I  TG  +NPARS G A+I  K   +   W+FWVGP +GA +A+  +NF+
Sbjct:   55 VLQIAITFNLVTAMAVQVTWKASGAHANPAVTLAFLVGSHISLPRAVAYVAAQLVGATVGAALLYGVMPG-DIRETLGINVVRNSVSTGQAVAVELLLTLQLVLCVFASTDSRQTSGS------PATMIGISVALGHLIGIHFTGCSMNPARSFGPAIIIGK---FTVHWVFWVGPLMGALLASLIYNFV 234          
BLAST of FC877840 vs. ExPASy Swiss-Prot
Match: TIP32_ORYSJ (Probable aquaporin TIP3-2 OS=Oryza sativa subsp. japonica GN=TIP3-2 PE=2 SV=2)

HSP 1 Score: 108.227 bits (269), Expect = 6.722e-23
Identity = 79/239 (33.05%), Postives = 116/239 (48.54%), Query Frame = 2
Query:  200 RALIAEFIAXXXXXXXXXXXXIG-YKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTG------VGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVI-YNKDKAWDDQWLFWVGPFIGAAIAAFYHNFI 892
            RA ++EF+A             G +K   D      G  G G+L +A A    +   V  +   SGGH+NPAVTFG+ + R++S  RA +Y  AQ LGA+  V L++           GG   +  G++ G        L  E++ TF LVYTV++    +RS        +APL IG       LA  P  G  +NPAR+ G A++ +N    W   W++W+GP IGA +A   + F+
Sbjct:   29 RAALSEFVATAVFVFAAEGSVYGLWKMYRDT-----GTLG-GLLVVAVAHALALAAAVAVSRNASGGHVNPAVTFGVLVGRRISFARAALYWAAQLLGAVLAVLLLRL--------ASGGMRPM--GFTLGHRIHERHALLLEVVMTFGLVYTVYATAVDRRSGGGD----IAPLAIGLVAGANILAGGPFDGAAMNPARAFGPALVGWN----WRHHWVYWLGPLIGAGMAGALYEFV 243          
BLAST of FC877840 vs. ExPASy Swiss-Prot
Match: BIB_DROME (Neurogenic protein big brain OS=Drosophila melanogaster GN=bib PE=1 SV=2)

HSP 1 Score: 105.531 bits (262), Expect = 4.357e-22
Identity = 83/275 (30.18%), Postives = 117/275 (42.55%), Query Frame = 2
Query:   86 MAKDTGVAEHGSYSAKDYTDPPPEPLFDAVELTKWSFYRALIAEFIAXXXXXXXXXXXXIGYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLAA------EIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHNFI 892
            M KD+    HG  +    T   P+    A E+    F+R++I+E +A             G          V       +L  A A G  +  L  C   ISG HINPAVT  L + R +S +RA MY+ AQC G I+G  L+      Y     G    L    S    LAA      E I TF++V   F +TDP +    +     +   IG A       ++P     +NPARSLG + + NK   WD  W++W GP +G   +   + +I
Sbjct:   29 MRKDSHGGGHGVNNRLSSTLQAPKRSMQA-EIRTLEFWRSIISECLASFMYVFIVCGAAAGV--------GVGASVSSVLLATALASGLAMATLTQCFLHISGAHINPAVTLALCVVRSISPIRAAMYITAQCGGGIAGAALL------YGVTVPGYQGNLQAAISHSAALAAWERFGVEFILTFLVVLCYFVSTDPMKKFMGN-----SAASIGCAYSACCFVSMPY----LNPARSLGPSFVLNK---WDSHWVYWFGPLVGGMASGLVYEYI 276          
BLAST of FC877840 vs. ExPASy Swiss-Prot
Match: AQPZ_SHIFL (Aquaporin Z OS=Shigella flexneri GN=aqpZ PE=3 SV=2)

HSP 1 Score: 105.145 bits (261), Expect = 5.691e-22
Identity = 66/204 (32.35%), Postives = 96/204 (47.06%), Query Frame = 2
Query:  314 GVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELAD---------GYSTGVGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHNFI*E 898
            G+G  G+A AFG  +  + +    ISGGH NPAVT GL+   +      V Y++AQ +G I    L+     S  T +   A+  A          GYS    L  E++ +   +  +  ATD    A        AP+ IG A+ ++HL +IP+T T +NPARS  A  I+    A +  W FWV P +G  I    +  + E
Sbjct:   33 GIGFAGVALAFGLTVLTMAFAVGHISGGHFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGGIVAAALLYLI-ASGKTGFDAAASGFASNGYGEHSPGGYSMLSALVVELVLSAGFLLVIHGATDKFAPAG------FAPIAIGLALTLIHLISIPVTNTSVNPARST-AVAIFQGGWALEQLWFFWVVPIVGGIIGGLIYRTLLE 228          
BLAST of FC877840 vs. ExPASy Swiss-Prot
Match: AQPZ_ECOLI (Aquaporin Z OS=Escherichia coli (strain K12) GN=aqpZ PE=1 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 5.691e-22
Identity = 66/204 (32.35%), Postives = 96/204 (47.06%), Query Frame = 2
Query:  314 GVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELAD---------GYSTGVGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHNFI*E 898
            G+G  G+A AFG  +  + +    ISGGH NPAVT GL+   +      V Y++AQ +G I    L+     S  T +   A+  A          GYS    L  E++ +   +  +  ATD    A        AP+ IG A+ ++HL +IP+T T +NPARS  A  I+    A +  W FWV P +G  I    +  + E
Sbjct:   33 GIGFAGVALAFGLTVLTMAFAVGHISGGHFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGGIVAAALLYLI-ASGKTGFDAAASGFASNGYGEHSPGGYSMLSALVVELVLSAGFLLVIHGATDKFAPAG------FAPIAIGLALTLIHLISIPVTNTSVNPARST-AVAIFQGGWALEQLWFFWVVPIVGGIIGGLIYRTLLE 228          
BLAST of FC877840 vs. ExPASy Swiss-Prot
Match: AQPZ_ECOL6 (Aquaporin Z OS=Escherichia coli O6 GN=aqpZ PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 5.691e-22
Identity = 66/204 (32.35%), Postives = 96/204 (47.06%), Query Frame = 2
Query:  314 GVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELAD---------GYSTGVGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHNFI*E 898
            G+G  G+A AFG  +  + +    ISGGH NPAVT GL+   +      V Y++AQ +G I    L+     S  T +   A+  A          GYS    L  E++ +   +  +  ATD    A        AP+ IG A+ ++HL +IP+T T +NPARS  A  I+    A +  W FWV P +G  I    +  + E
Sbjct:   33 GIGFAGVALAFGLTVLTMAFAVGHISGGHFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGGIVAAALLYLI-ASGKTGFDAAASGFASNGYGEHSPGGYSMLSALVVELVLSAGFLLVIHGATDKFAPAG------FAPIAIGLALTLIHLISIPVTNTSVNPARST-AVAIFQGGWALEQLWFFWVVPIVGGIIGGLIYRTLLE 228          
BLAST of FC877840 vs. ExPASy Swiss-Prot
Match: AQPZ_ECO57 (Aquaporin Z OS=Escherichia coli O157:H7 GN=aqpZ PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 5.691e-22
Identity = 66/204 (32.35%), Postives = 96/204 (47.06%), Query Frame = 2
Query:  314 GVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELAD---------GYSTGVGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHNFI*E 898
            G+G  G+A AFG  +  + +    ISGGH NPAVT GL+   +      V Y++AQ +G I    L+     S  T +   A+  A          GYS    L  E++ +   +  +  ATD    A        AP+ IG A+ ++HL +IP+T T +NPARS  A  I+    A +  W FWV P +G  I    +  + E
Sbjct:   33 GIGFAGVALAFGLTVLTMAFAVGHISGGHFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGGIVAAALLYLI-ASGKTGFDAAASGFASNGYGEHSPGGYSMLSALVVELVLSAGFLLVIHGATDKFAPAG------FAPIAIGLALTLIHLISIPVTNTSVNPARST-AVAIFQGGWALEQLWFFWVVPIVGGIIGGLIYRTLLE 228          
BLAST of FC877840 vs. ExPASy Swiss-Prot
Match: TIP44_MAIZE (Aquaporin TIP4-4 OS=Zea mays GN=TIP4-4 PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 2.162e-21
Identity = 74/230 (32.17%), Postives = 111/230 (48.26%), Query Frame = 2
Query:  200 RALIAEFIAXXXXXXXXXXXXIGYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLAAEIIGTFVLVYTVF-SATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHN 886
            RA++AE I             +G    T       G   VG+  +A A   ++ V+V     +SGGHINPAVT GL    +++L R+ +Y+ AQ LG+     L+ AF        G   + L  G     G+  E + TF L++ V+ +  DP+R+     V  + PL +G  V    LA  P +G  +NPARS G A++      W D W++WVGP IG  +A   ++
Sbjct:   19 RAVLAELILTFLFVFAG----VGSAMATGKLAGGGGDTVVGLTAVALAHTLVVAVMVSAGLHVSGGHINPAVTLGLAATGRITLFRSALYVAAQLLGSTLAC-LLLAFLA--VADSGVPVHALGAGVGALRGVLMEAVLTFSLLFAVYATVVDPRRA-----VGGMGPLLVGLVVGANVLAGGPFSGASMNPARSFGPALVAG---VWADHWVYWVGPLIGGPLAGLVYD 233          
BLAST of FC877840 vs. ExPASy Swiss-Prot
Match: AQP6_MOUSE (Aquaporin-6 OS=Mus musculus GN=Aqp6 PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 3.689e-21
Identity = 70/195 (35.90%), Postives = 96/195 (49.23%), Query Frame = 2
Query:  323 ILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGG-----GANELADGYSTGVGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHNFI 892
            +L IA  F       V  +   SG H NPAVT    +   +SL RA+ Y+ AQ  GA +G  L+      Y    GG     G N + +  STG  +A E++ T  LV  VF++ D +++             IG +V + HL  I  TG  +NPARS G AVI  K   +   W+FWVGP  GA +A+  +NFI
Sbjct:   52 VLQIAITFNLATATAVQISWKTSGAHANPAVTLAYLVGSHISLPRAMAYIAAQLAGATAGAALL------YGVTPGGIRETLGVNVVHNSTSTGQAVAVELVLTLQLVLCVFASMDGRQTLAS------PAAMIGTSVALGHLIGIYFTGCSMNPARSFGPAVIVGK---FAVHWIFWVGPLTGAVLASLIYNFI 231          
The following BLAST results are available for this feature:
BLAST of FC877840 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 195
Match NameE-valueIdentityDescription
AQPZ2_AGRT51.769e-2336.27Aquaporin Z 2 OS=Agrobacterium tumefaciens (strain... [more]
AQP6_HUMAN3.017e-2336.32Aquaporin-6 OS=Homo sapiens GN=AQP6 PE=2 SV=2[more]
TIP32_ORYSJ6.722e-2333.05Probable aquaporin TIP3-2 OS=Oryza sativa subsp. j... [more]
BIB_DROME4.357e-2230.18Neurogenic protein big brain OS=Drosophila melanog... [more]
AQPZ_SHIFL5.691e-2232.35Aquaporin Z OS=Shigella flexneri GN=aqpZ PE=3 SV=2[more]
AQPZ_ECOLI5.691e-2232.35Aquaporin Z OS=Escherichia coli (strain K12) GN=aq... [more]
AQPZ_ECOL65.691e-2232.35Aquaporin Z OS=Escherichia coli O6 GN=aqpZ PE=3 SV... [more]
AQPZ_ECO575.691e-2232.35Aquaporin Z OS=Escherichia coli O157:H7 GN=aqpZ PE... [more]
TIP44_MAIZE2.162e-2132.17Aquaporin TIP4-4 OS=Zea mays GN=TIP4-4 PE=2 SV=1[more]
AQP6_MOUSE3.689e-2135.90Aquaporin-6 OS=Mus musculus GN=Aqp6 PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionIC0AAA99CF07RM1 IVIA1 Citrus clementina cDNA clone IC0AAA99CF07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877840 ID=FC877840; Name=FC877840; organism=Citrus clementina; type=EST; length=924bp
AAGGCTTCTCTCTCGTTGTGCTTGTGGCTTTGCAGTGCTCTCAGTTTTCT
CTGTTTCTCTCCAAATCATTGTTACTGGTTTTCCAATGGCGAAGGACACT
GGGGTGGCAGAGCACGGCTCATATTCAGCCAAGGACTACACGGACCCACC
GCCGGAGCCGCTATTCGACGCCGTGGAGCTGACCAAATGGTCATTCTACA
GAGCCTTGATAGCTGAGTTCATAGCAACCCTGCTCTTTCTTTACGTCACT
GTCTTGACTGTCATTGGCTACAAAAGCCAGACCGATCCCGCCAAGAACGT
CGACGGCTGTGCCGGCGTCGGCATCCTCGGTATCGCCTGGGCCTTCGGTG
GCATGATCTTTGTCCTCGTTTACTGCACCGCCGGTATCTCAGGTGGTCAC
ATTAACCCGGCAGTGACGTTCGGACTATTCTTGGCCCGCAAGGTGTCGTT
GGTCCGTGCTGTGATGTACATGGTGGCGCAGTGCCTTGGTGCAATCTCCG
GTGTTGGGTTGGTCAAGGCTTTCCAAAAATCTTACTACACAAGGTACGGA
GGTGGGGCCAACGAGCTGGCCGATGGGTACAGCACAGGCGTTGGATTGGC
CGCCGAGATCATCGGCACCTTTGTGTTGGTTTACACTGTCTTCTCGGCCA
CTGATCCCAAGAGAAGCGCCAGAGACTCCCATGTCCCCGTTTTGGCACCG
CTCCCCATTGGATTTGCTGTGTTCATGGTACACTTGGCCACAATCCCAAT
CACTGGCACTGGCATTAACCCAGCAAGGAGTCTCGGGGCCGCTGTTATTT
ACAACAAGGACAAGGCTTGGGATGATCAATGGCTCTTCTGGGTTGGACCC
TTCATCGGTGCAGCAATTGCGGCTTTCTACCACAATTTCATCTGAGAGCT
GGAGCTGTCAAGGCTCTTGGGTTC
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