FC877845

Overview
NameFC877845
Unique NameFC877845
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length893
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC877845 vs. ExPASy Swiss-Prot
Match: ORYA_ORYSJ (Oryzain alpha chain OS=Oryza sativa subsp. japonica GN=Os04g0650000 PE=1 SV=2)

HSP 1 Score: 169.088 bits (427), Expect = 3.070e-41
Identity = 96/254 (37.80%), Postives = 141/254 (55.51%), Query Frame = 3
Query:  138 ILSHHESTNNDLLGAEHHFSLFKKKFNKAYASQEEHDRRFTIFKANLRRAARRQKLDPSATH----GVTQFSDLTPAEFRRTYLGLRRKLRLPKDADQAPILPTND-LPADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFDKSKIAASVANFSVVSLDEDQIAAHLVKNGPLAVAINA 884
            I+S+ E +  +   A   ++ +K +  K+Y +  E +RR+  F+ NLR          +  H    G+ +F+DLT  E+R TYLGLR K R  +      +   N+ LP   DWR KGAV  +KDQG CGSCW+FS   A+EG N + TG L+SLSEQ+LVDCD         S + GCNGGLM+ AF++ +  GG+  E+DYPY G D         +K+  ++ ++  V+ + +      V N P++VAI A
Sbjct:   25 IVSYGERSEEE---ARRLYAEWKAEHGKSYNAVGEEERRYAAFRDNLRYIDEHNAAADAGVHSFRLGLNRFADLTNEEYRDTYLGLRNKPRRERKVSDRYLAADNEALPESVDWRTKGAVAEIKDQGGCGSCWAFSAIAAVEGINQIVTGDLISLSEQELVDCD--------TSYNEGCNGGLMDYAFDFIINNGGIDTEDDYPYKGKDERCDVNRKNAKV-VTIDSYEDVTPNSETSLQKAVANQPVSVAIEA 266          
BLAST of FC877845 vs. ExPASy Swiss-Prot
Match: XCP1_ARATH (Xylem cysteine proteinase 1 OS=Arabidopsis thaliana GN=XCP1 PE=1 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 4.009e-41
Identity = 95/234 (40.60%), Postives = 133/234 (56.84%), Query Frame = 3
Query:  192 FSLFKKKFNKAYASQEEHDRRFTIFKANLRRAARRQKLDPSATHGVTQFSDLTPAEFRRTYLGLRRKLRLPKDADQAPIL--PTNDLPADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFDKSKI-AASVANFSVVSLDEDQIAAHLVKNGPLAVAINA 884
            F  +  + +KAY S EE   RF +F+ NL    +R     S   G+ +F+DLT  EF+  YLGL +     K    A        DLP   DWR+KGAV PVKDQG CGSCW+FST  A+EG N + TG L SLSEQ+L+DCD         + +SGCNGGLM+ AF+Y +  GGL +E+DYPY   +    C+  K  +   +++ +  V  ++D+     + + P++VAI A
Sbjct:   51 FESWMSEHSKAYKSVEEKVHRFEVFRENLMHIDQRNNEINSYWLGLNEFADLTHEEFKGRYLGLAKPQFSRKRQPSANFRYRDITDLPKSVDWRKKGAVAPVKDQGQCGSCWAFSTVAAVEGINQITTGNLSSLSEQELIDCD--------TTFNSGCNGGLMDYAFQYIISTGGLHKEDDYPYLMEE--GICQEQKEDVERVTISGYEDVPENDDESLVKALAHQPVSVAIEA 274          
BLAST of FC877845 vs. ExPASy Swiss-Prot
Match: XCP2_ARATH (Xylem cysteine proteinase 2 OS=Arabidopsis thaliana GN=XCP2 PE=1 SV=2)

HSP 1 Score: 167.162 bits (422), Expect = 1.167e-40
Identity = 96/234 (41.03%), Postives = 136/234 (58.12%), Query Frame = 3
Query:  192 FSLFKKKFNKAYASQEEHDRRFTIFKANLRRAARRQKLDPSATHGVTQFSDLTPAEFRRTYLGLRRKL-RLPKDADQAPIL--PTNDLPADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFDKSKIAASVANFSVVSLDEDQIAAHLVKNGPLAVAINA 884
            F  +   F KAY + EE   RF +FK NL+      K   S   G+ +F+DL+  EF++ YLGL+  + R  ++   A         +P   DWR+KGAV  VK+QGSCGSCW+FST  A+EG N + TG L +LSEQ+L+DCD         + ++GCNGGLM+ AFEY +K GGL +EEDYPY+  +     + D+S+      +  V + DE  +   L  + PL+VAI+A
Sbjct:   51 FENWISNFEKAYETVEEKFLRFEVFKDNLKHIDETNKKGKSYWLGLNEFADLSHEEFKKMYLGLKTDIVRRDEERSYAEFAYRDVEAVPKSVDWRKKGAVAEVKNQGSCGSCWAFSTVAAVEGINKIVTGNLTTLSEQELIDCD--------TTYNNGCNGGLMDYAFEYIVKNGGLRKEEDYPYSMEEGTCEMQKDESETVTINGHQDVPTNDEKSLLKALA-HQPLSVAIDA 275          
BLAST of FC877845 vs. ExPASy Swiss-Prot
Match: CATF_HUMAN (Cathepsin F OS=Homo sapiens GN=CTSF PE=1 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 1.990e-40
Identity = 101/236 (42.80%), Postives = 133/236 (56.36%), Query Frame = 3
Query:  192 FSLFKKKFNKAYASQEEHDRRFTIFKANLRRAARRQKLDP-SATHGVTQFSDLTPAEFRRTYLGLRRKLRLPKDADQAPILPTNDL-PADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFDKSKIAASVANFSVVSLDEDQIAAHLVKNGPLAVAINAVYM 893
            F  F   +N+ Y S+EE   R ++F  N+ RA + Q LD  +A +GVT+FSDLT  EFR  YL    +        QA  +   DL P ++DWR KGAV  VKDQG CGSCW+FS TG +EG  FL  G L+SLSEQ+L+DCD           D  C GGL ++A+      GGL  E+DY Y G     +C F   K    + +   +S +E ++AA L K GP++VAINA  M
Sbjct:  187 FKNFVITYNRTYESKEEARWRLSVFVNNMVRAQKIQALDRGTAQYGVTKFSDLTEEEFRTIYLNTLLRKEPGNKMKQAKSV--GDLAPPEWDWRSKGAVTKVKDQGMCGSCWAFSVTGNVEGQWFLNQGTLLSLSEQELLDCD---------KMDKACMGGLPSNAYSAIKNLGGLETEDDYSYQG--HMQSCNFSAEKAKVYINDSVELSQNEQKLAAWLAKRGPISVAINAFGM 409          
BLAST of FC877845 vs. ExPASy Swiss-Prot
Match: CATF_MOUSE (Cathepsin F OS=Mus musculus GN=Ctsf PE=2 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 2.599e-40
Identity = 99/236 (41.95%), Postives = 133/236 (56.36%), Query Frame = 3
Query:  192 FSLFKKKFNKAYASQEEHDRRFTIFKANLRRAARRQKLDP-SATHGVTQFSDLTPAEFRRTYLGLRRKLRLPKDADQAPILPTNDL-PADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFDKSKIAASVANFSVVSLDEDQIAAHLVKNGPLAVAINAVYM 893
            F  F   +N+ Y S+EE   R T+F  N+ RA + Q LD  +A +G+T+FSDLT  EF   YL     L+       +P    NDL P ++DWR+KGAV  VK+QG CGSCW+FS TG +EG  FL  G L+SLSEQ+L+DCD           D  C GGL ++A+      GGL  E+DY Y G      C F        + +   +S +E++IAA L + GP++VAINA  M
Sbjct:  165 FKDFMTTYNRTYESREEAQWRLTVFARNMIRAQKIQALDRGTAQYGITKFSDLTEEEFHTIYLN--PLLQKESGRKMSPAKSINDLAPPEWDWRKKGAVTEVKNQGMCGSCWAFSVTGNVEGQWFLNRGTLLSLSEQELLDCD---------KVDKACLGGLPSNAYAAIKNLGGLETEDDYGYQG--HVQTCNFSAQMAKVYINDSVELSRNENKIAAWLAQKGPISVAINAFGM 387          
BLAST of FC877845 vs. ExPASy Swiss-Prot
Match: CPR1_ARATH (Probable cysteine proteinase At3g19400 OS=Arabidopsis thaliana GN=At3g19400 PE=2 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 3.394e-40
Identity = 96/228 (42.11%), Postives = 135/228 (59.21%), Query Frame = 3
Query:  219 KAYASQEEHDRRFTIFKANLRRAARRQKL-DPSATHGVTQFSDLTPAEFRRTYLGLRRKLRLPKDADQAP--ILPTND-LPADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFDKSK--IAASVANFSVVSLDEDQIAAHLVKNGPLAVAINA 884
            K Y    E +RRF IFK NL+       + D +   G+T+F+DLT  EFR  YL  R+K+   KD+ +    +    D LP + DWR  GAV  VKDQG+CGSCW+FS  GA+EG N + TG+L+SLSEQ+LVDCD        G  ++GC+GG+MN AFE+ +K GG+  ++DYPY   D G  C  DK+      ++  +  V  D+++     V + P++VAI A
Sbjct:   53 KNYNGLGEKERRFKIFKDNLKFVDEHNSVPDRTFEVGLTRFADLTNEEFRAIYL--RKKMERTKDSVKTERYLYKEGDVLPDEVDWRANGAVVSVKDQGNCGSCWAFSAVGAVEGINQITTGELISLSEQELVDCDR-------GFVNAGCDGGIMNYAFEFIMKNGGIETDQDYPYNANDLG-LCNADKNNNTRVVTIDGYEDVPRDDEKSLKKAVAHQPVSVAIEA 270          
BLAST of FC877845 vs. ExPASy Swiss-Prot
Match: RD21A_ARATH (Cysteine proteinase RD21a OS=Arabidopsis thaliana GN=RD21A PE=1 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 4.433e-40
Identity = 91/216 (42.13%), Postives = 127/216 (58.80%), Query Frame = 3
Query:  240 EHDRRFTIFKANLRRAARRQKLDPSATHGVTQFSDLTPAEFRRTYLGLRRKLRLPKDADQAPILPTND-LPADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFDKSKIAASVANFSVVSLDEDQIAAHLVKNGPLAVAINA 884
            E DRRF IFK NLR      + + S   G+T+F+DLT  E+R  YLG + + +  +           D LP   DWR+KGAV  VKDQG CGSCW+FST GA+EG N + TG L++LSEQ+LVDCD         S + GCNGGLM+ AFE+ +K GG+  ++DYPY G D G   +  K+    ++ ++  V    ++     V + P+++AI A
Sbjct:   68 EKDRRFEIFKDNLRFVDEHNEKNLSYRLGLTRFADLTNDEYRSKYLGAKMEKKGERRTSLRYEARVGDELPESIDWRKKGAVAEVKDQGGCGSCWAFSTIGAVEGINQIVTGDLITLSEQELVDCD--------TSYNEGCNGGLMDYAFEFIIKNGGIDTDKDYPYKGVD-GTCDQIRKNAKVVTIDSYEDVPTYSEESLKKAVAHQPISIAIEA 274          
BLAST of FC877845 vs. ExPASy Swiss-Prot
Match: CATV_NPVAH (Viral cathepsin OS=Adoxophyes honmai nucleopolyhedrovirus GN=VCATH PE=3 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 7.562e-40
Identity = 95/250 (38.00%), Postives = 135/250 (54.00%), Query Frame = 3
Query:  168 DLLGAEHHFSLFKKKFNKAYASQEEHDRRFTIFKANLRRAARRQKLDPSATHGVTQFSDLTPAEFRRTYLGLRRKL--RLPKDADQ--------APILPTNDLPADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFDKSKIAASVANFS-VVSLDEDQIAAHLVKNGPLAVAINA 884
            D+  A+H+F  F   +NK Y   +  + RF IFK NL     + KL+ SA + + +FSDL+  E    Y GL  K    + +            AP    ++LP +FDWR    +  VKDQG+CGSCW+ +  G LE    +    L++LSEQQL+DCD         S +  C+GGLM++AFE  + AGGLM E DYPY GT     CK D  K A SV++    +  +E+ +   L+  GP+A+AI+A
Sbjct:   24 DIHDAQHYFETFIINYNKQYPDTKTKNYRFKIFKQNLEDINEKNKLNDSAIYNINKFSDLSKNELLTKYTGLTSKKPSNMVRSTSNFCNVIHLDAPPDVHDELPQNFDWRVNNKMTSVKDQGACGSCWAHAAVGTLETLYAIKHNYLINLSEQQLIDCD---------SANMACDGGLMHTAFEQLMNAGGLMEEIDYPYQGTK--GVCKIDNKKFALSVSSCKRYIFQNEENLKKELITMGPIAMAIDA 262          
BLAST of FC877845 vs. ExPASy Swiss-Prot
Match: CYSP4_BRANA (Cysteine proteinase COT44 (Fragment) OS=Brassica napus PE=2 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 1.685e-39
Identity = 92/223 (41.26%), Postives = 134/223 (60.09%), Query Frame = 3
Query:  240 EHDRRFTIFKANLRRAARRQKLDPSATH--GVTQFSDLTPAEFRRTYLGLR----RKLRLPKDADQ--APILPTNDLPADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFDKSKIAASVANFSVVSLDEDQIAAHLVKNGPLAVAINA 884
            + D RF IFK NLR      + + +AT+  G+T F++LT  E+R  YLG R    R++   K+ +   +  +  +++P   DWR+KGAV  +KDQG+CGSCW+FST  A+EG N + TG+LVSLSEQ+LVDCD         S + GCNGGLM+ AF++ +K GGL  E+DYPY GT+ G      K+    ++  +  V   ++      V   P++VAI+A
Sbjct:   24 QQDERFNIFKDNLRFIDLHNENNKNATYKLGLTIFANLTNDEYRSLYLGARTEPVRRITKAKNVNMKYSAAVNVDEVPVTVDWRQKGAVNAIKDQGTCGSCWAFSTAAAVEGINKIVTGELVSLSEQELVDCDK--------SYNQGCNGGLMDYAFQFIMKNGGLNTEKDYPYHGTN-GKCNSLLKNSRVVTIDGYEDVPSKDETALKRAVSYQPVSVAIDA 237          
BLAST of FC877845 vs. ExPASy Swiss-Prot
Match: CRUST_PANBO (Crustapain OS=Pandalus borealis GN=Cys PE=1 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 2.200e-39
Identity = 97/237 (40.93%), Postives = 127/237 (53.59%), Query Frame = 3
Query:  201 FKKKFNKAYASQEEHDRRFTIFKANLR----RAARRQKLDPSATHGVTQFSDLTPAEFRRTYLGLRRKLR----LPKDADQAPILPTNDLPADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFDKSKIAASVANFSVVSLDEDQIAAHLVKN-GPLAVAINA 884
            FK KF K YA+ EE   R ++F   L+       R  K + +    +  FSDLT  E   T  G+ R+      LPK A      PT  + AD DWR KGAV PVKDQG CGSCW+FS   ALEGA+FL TG LVSLSEQ LVDC            + GCNGG    A++Y +   G+  E  YPY   D    C++D   I A+V+++   +  ++    H V+N GP++V I+A
Sbjct:   23 FKTKFGKKYANSEEESHRMSVFMDKLKFIQEHNERYDKGEVTYWLKINNFSDLTHEEVLATKTGMTRRRHPLSVLPKSA------PTTPMAADVDWRNKGAVTPVKDQGQCGSCWAFSAVAALEGAHFLKTGDLVSLSEQNLVDCSSSYG-------NQGCNGGWPYQAYQYIIANRGIDTESSYPYKAIDDN--CRYDAGNIGATVSSYVEPASGDESALQHAVQNEGPVSVCIDA 244          
The following BLAST results are available for this feature:
BLAST of FC877845 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 158
Match NameE-valueIdentityDescription
ORYA_ORYSJ3.070e-4137.80Oryzain alpha chain OS=Oryza sativa subsp. japonic... [more]
XCP1_ARATH4.009e-4140.60Xylem cysteine proteinase 1 OS=Arabidopsis thalian... [more]
XCP2_ARATH1.167e-4041.03Xylem cysteine proteinase 2 OS=Arabidopsis thalian... [more]
CATF_HUMAN1.990e-4042.80Cathepsin F OS=Homo sapiens GN=CTSF PE=1 SV=1[more]
CATF_MOUSE2.599e-4041.95Cathepsin F OS=Mus musculus GN=Ctsf PE=2 SV=1[more]
CPR1_ARATH3.394e-4042.11Probable cysteine proteinase At3g19400 OS=Arabidop... [more]
RD21A_ARATH4.433e-4042.13Cysteine proteinase RD21a OS=Arabidopsis thaliana ... [more]
CATV_NPVAH7.562e-4038.00Viral cathepsin OS=Adoxophyes honmai nucleopolyhed... [more]
CYSP4_BRANA1.685e-3941.26Cysteine proteinase COT44 (Fragment) OS=Brassica n... [more]
CRUST_PANBO2.200e-3940.93Crustapain OS=Pandalus borealis GN=Cys PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionIC0AAA65DB10RM1 IVIA1 Citrus clementina cDNA clone IC0AAA65DB10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877845 ID=FC877845; Name=FC877845; organism=Citrus clementina; type=EST; length=893bp
CATTGTCTAAAAACATGGGATCTAAAACAGTAGTTTTCTTTCTGGTCTCT
CTCGTCGTCGTCTCCGCCGTTTCATCAGGGACGTTGATCGACGATGTTGA
TCAGCTGATCAGGCAAGTAACGGACGGCGGTGACGAGATCCTAAGCCACC
ACGAGAGCACCAACAACGACCTCTTGGGCGCAGAGCACCACTTCTCCCTA
TTCAAGAAGAAGTTCAATAAAGCGTACGCTTCGCAGGAGGAGCACGACCG
TAGGTTCACTATTTTCAAGGCCAACTTGCGACGCGCCGCGCGTCGCCAGA
AGCTCGACCCGAGCGCCACCCACGGCGTCACTCAGTTCTCCGACTTGACT
CCGGCCGAGTTCCGCCGGACGTACCTTGGCCTCAGGAGGAAGCTGAGGCT
GCCTAAGGATGCGGATCAGGCGCCGATCTTGCCTACGAATGATTTGCCGG
CGGATTTTGATTGGAGAGAGAAGGGCGCTGTAGGCCCTGTTAAAGATCAG
GGTTCATGCGGATCATGCTGGAGTTTCAGTACAACAGGGGCCTTGGAAGG
TGCTAACTTCCTGGCAACTGGAAAGCTTGTGAGCCTCAGTGAGCAACAGC
TTGTGGATTGCGATCATGAGTGTGATCCTGAGGAACCAGGTTCTTGTGAT
TCTGGATGCAATGGTGGGCTTATGAACAGTGCTTTTGAGTACACACTCAA
GGCTGGTGGGCTTATGCGGGAGGAAGACTATCCTTACACCGGCACTGATC
GTGGCCACGCCTGCAAATTCGATAAGAGTAAGATTGCTGCCTCAGTGGCC
AACTTCAGTGTTGTCTCCCTTGATGAGGATCAAATTGCTGCCCATCTTGT
GAAAAATGGTCCCCTTGCAGTGGCCATCAATGCCGTGTACATG
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