FC877910

Overview
NameFC877910
Unique NameFC877910
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length819
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC877910 vs. ExPASy Swiss-Prot
Match: CLPP_GEOKA (ATP-dependent Clp protease proteolytic subunit OS=Geobacillus kaustophilus GN=clpP PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.203e-19
Identity = 56/138 (40.58%), Postives = 81/138 (58.70%), Query Frame = 3
Query:  405 RIVYIGMPLVPAVTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESVGMESEGFAIYDTLMQMKCEVHTVAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPSSGLLPASDVLIRAKEAMVNRDTLVKLL 818
            RIV++G P+   V   +V++L++L   DP   I LYINS G         G  + G AIYDT+  +K +V T+ +G A  M   LLAAG KGKRF +P+++IMI QP   + G   A+++ I AK  +  RD L ++L
Sbjct:   28 RIVFLGSPIDDQVANSIVSQLLFLAAEDPDKDISLYINSPG---------GSITAGLAIYDTMQFIKPDVSTICIGMAASMGAFLLAAGAKGKRFALPNSEIMIHQPLGGAQG--QATEIEIAAKRILFLRDKLNRIL 154          
BLAST of FC877910 vs. ExPASy Swiss-Prot
Match: CLPP2_SYNSC (ATP-dependent Clp protease proteolytic subunit 2 OS=Synechococcus sp. (strain CC9605) GN=clpP2 PE=3 SV=2)

HSP 1 Score: 96.2857 bits (238), Expect = 2.203e-19
Identity = 55/138 (39.86%), Postives = 80/138 (57.97%), Query Frame = 3
Query:  405 RIVYIGMPLVPAVTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESVGMESEGFAIYDTLMQMKCEVHTVAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPSSGLLPASDVLIRAKEAMVNRDTLVKLL 818
            RI+++G  +       +VA++++L+  DP+  IYLYINS G         G   +G  I+DT+  +K +VHTV VG A  M   LL AGTKGKR  + H++IMI QP   + G   ASD+ I+A E +  ++ L K L
Sbjct:   26 RIIFLGEAVTSDSANRIVAQMLFLEAEDPEKDIYLYINSPG---------GSVYDGLGIFDTMQHIKPDVHTVCVGLAASMGAFLLCAGTKGKRSSLQHSRIMIHQPLGGAQG--QASDIRIQADEILFLKERLNKEL 152          
BLAST of FC877910 vs. ExPASy Swiss-Prot
Match: CLPP1_PROMP (ATP-dependent Clp protease proteolytic subunit 1 OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=clpP1 PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.203e-19
Identity = 53/134 (39.55%), Postives = 79/134 (58.96%), Query Frame = 3
Query:  405 RIVYIGMPLVPAVTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESVGMESEGFAIYDTLMQMKCEVHTVAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPSSGLLPASDVLIRAKEAMVNRDTL 806
            RI+++G  +       +VA+L++L+  DP+  IY+YINS G         G   +G  I+DT+  +K ++HTV VG A  M   LLAAGTKGKR  + H++IMI QP   + G   ASD+ I+A E +  ++ L
Sbjct:   26 RIIFLGEQVTSDTANRIVAQLLFLEAEDPEKDIYMYINSPG---------GSVYDGLGIFDTMQHVKPDIHTVCVGLAASMGAFLLAAGTKGKRSSLRHSRIMIHQPLGGARG--QASDIRIQADEILYLKERL 148          
BLAST of FC877910 vs. ExPASy Swiss-Prot
Match: CLPP_EUBE2 (ATP-dependent Clp protease proteolytic subunit OS=Eubacterium eligens (strain ATCC 27750 / VPI C15-48) GN=clpP PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.877e-19
Identity = 52/138 (37.68%), Postives = 80/138 (57.97%), Query Frame = 3
Query:  405 RIVYIGMPLVPAVTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESVGMESEGFAIYDTLMQMKCEVHTVAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPSSGLLPASDVLIRAKEAMVNRDTLVKLL 818
            RI+++G  +      LVVA++++L+  DP   I+ YINS G         G  S GFAIYDT+  +KC+V T+ +G A  M   LL+ G KGKR  +P+A+IMI QP   + G    +++ I A+  +  R+ L ++L
Sbjct:   28 RIIFLGEEVTDVSANLVVAQMLFLEAEDPSKDIHFYINSPG---------GSVSAGFAIYDTMQYIKCDVSTICIGMAASMGAFLLSGGAKGKRLALPNAEIMIHQPSGGARG--QETEIRIVAENILKTRNKLNEIL 154          
BLAST of FC877910 vs. ExPASy Swiss-Prot
Match: CLPP_DESRM (ATP-dependent Clp protease proteolytic subunit OS=Desulfotomaculum reducens (strain MI-1) GN=clpP PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.877e-19
Identity = 55/134 (41.04%), Postives = 79/134 (58.96%), Query Frame = 3
Query:  405 RIVYIGMPLVPAVTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESVGMESEGFAIYDTLMQMKCEVHTVAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPSSGLLPASDVLIRAKEAMVNRDTL 806
            RI++IG P+   +  LV+A+ ++L+  DP+  I+LYINS G         G+ + G AIYDT+  +K  V T+ +G A  M   LLAAG  GKR+ +P A+IMI QP     G   A+D+ I AKE +  +D L
Sbjct:   29 RIIFIGGPIDDHIANLVIAQFLFLEAEDPEKDIHLYINSPG---------GVVTAGLAIYDTMQYIKPAVSTICLGQAASMGSFLLAAGAPGKRYALPMARIMIHQPLGGVQG--QATDIDIHAKEILRMKDLL 151          
BLAST of FC877910 vs. ExPASy Swiss-Prot
Match: CLPP2_CHLPN (ATP-dependent Clp protease proteolytic subunit 2 OS=Chlamydia pneumoniae GN=clpP2 PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.877e-19
Identity = 54/139 (38.85%), Postives = 81/139 (58.27%), Query Frame = 3
Query:  405 RIVYIGMPLVPAVTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESVGMESEGFAIYDTLMQMKCEVHTVAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPSSGLLPAS-DVLIRAKEAMVNRDTLVKLL 818
            RIV IG  +   +   V+A+L++L   DPK  I ++INS G         G  + G AIYDT+  + C+V+T  +G A  M  LLL+AGTKGKR  +PH+++MI Q   PS G++  S D+ ++A E +  +  L  +L
Sbjct:   28 RIVMIGQEITEPLANTVIAQLLFLMSEDPKKDIQIFINSPG---------GYITAGLAIYDTIRFLGCDVNTYCIGQAASMGALLLSAGTKGKRHALPHSRMMIHQ---PSGGIIGTSADIQLQAAEILTLKKHLANIL 154          
BLAST of FC877910 vs. ExPASy Swiss-Prot
Match: CLPP1_PROMT (ATP-dependent Clp protease proteolytic subunit 1 OS=Prochlorococcus marinus (strain NATL2A) GN=clpP1 PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.877e-19
Identity = 56/138 (40.58%), Postives = 79/138 (57.25%), Query Frame = 3
Query:  405 RIVYIGMPLVPAVTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESVGMESEGFAIYDTLMQMKCEVHTVAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPSSGLLPASDVLIRAKEAMVNRDTLVKLL 818
            RIV++G P+       +VA+L++L+  DP   I+LYINS G         G   +G  I+DT+  +K ++HTV VG A  M   LL AG KGKR  + H++IMI QP   + G   ASD+ I+A E +  +D L K L
Sbjct:   26 RIVFLGEPVTSDSANRIVAQLLFLEADDPDKDIFLYINSPG---------GSVYDGLGIFDTMQHVKPDIHTVCVGLAASMGAFLLCAGAKGKRSSLLHSRIMIHQPLGGARG--QASDIRIQADEILFIKDKLNKEL 152          
BLAST of FC877910 vs. ExPASy Swiss-Prot
Match: CLPP1_PROM9 (ATP-dependent Clp protease proteolytic subunit 1 OS=Prochlorococcus marinus (strain MIT 9312) GN=clpP1 PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.877e-19
Identity = 53/134 (39.55%), Postives = 78/134 (58.21%), Query Frame = 3
Query:  405 RIVYIGMPLVPAVTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESVGMESEGFAIYDTLMQMKCEVHTVAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPSSGLLPASDVLIRAKEAMVNRDTL 806
            RI+++G  +       +VA+L++L+  DP   IY+YINS G         G   +G  I+DT+  +K ++HTV VG A  M   LLAAGTKGKR  + H++IMI QP   + G   ASD+ I+A E +  ++ L
Sbjct:   26 RIIFLGEQVTSETANRIVAQLLFLEAEDPDKDIYMYINSPG---------GSVYDGLGIFDTMQHVKPDIHTVCVGLAASMGAFLLAAGTKGKRSSLRHSRIMIHQPLGGARG--QASDIRIQADEILFLKERL 148          
BLAST of FC877910 vs. ExPASy Swiss-Prot
Match: CLPP_SULDN (ATP-dependent Clp protease proteolytic subunit OS=Sulfurimonas denitrificans (strain ATCC 33889 / DSM 1251) GN=clpP PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.758e-19
Identity = 53/138 (38.41%), Postives = 83/138 (60.14%), Query Frame = 3
Query:  405 RIVYIGMPLVPAVTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESVGMESEGFAIYDTLMQMKCEVHTVAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPSSGLLPASDVLIRAKEAMVNRDTLVKLL 818
            RI+ +   +  AV   +VA++++L+  DP+  IY YINS G         G+ + G AIYDT+  ++ +V T+ VG A  M   LL++G KGKR+ +PHA+IMI QP   + G   A+D+ I+AKE +  ++ L  +L
Sbjct:   28 RIIMLSGEVNDAVASSIVAQMLFLEAEDPEKDIYFYINSPG---------GVVTAGMAIYDTMNYIRPDVATICVGQAASMGAFLLSSGAKGKRYALPHARIMIHQPLGGAQG--QATDIAIQAKEILRMKEELNAIL 154          
BLAST of FC877910 vs. ExPASy Swiss-Prot
Match: CLPP_MACCJ (ATP-dependent Clp protease proteolytic subunit OS=Macrococcus caseolyticus (strain JCSC5402) GN=clpP PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.758e-19
Identity = 53/138 (38.41%), Postives = 81/138 (58.70%), Query Frame = 3
Query:  405 RIVYIGMPLVPAVTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESVGMESEGFAIYDTLMQMKCEVHTVAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPSSGLLPASDVLIRAKEAMVNRDTLVKLL 818
            RI+ +G  +   V   +V++L++LQ  D +  IYLYINS G         G  + G AIYDT+  +K +V T+ +G A  M   LLAAG KGKRF +P+A++MI QP   + G   A+++ I A+  +  R+ L ++L
Sbjct:   28 RIIMLGSAIDDNVANSIVSQLLFLQAQDAEKDIYLYINSPG---------GSVTAGMAIYDTMQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQPLGGAQG--QATEIEIAARHILKTREKLNRIL 154          
The following BLAST results are available for this feature:
BLAST of FC877910 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CLPP_GEOKA2.203e-1940.58ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP2_SYNSC2.203e-1939.86ATP-dependent Clp protease proteolytic subunit 2 O... [more]
CLPP1_PROMP2.203e-1939.55ATP-dependent Clp protease proteolytic subunit 1 O... [more]
CLPP_EUBE22.877e-1937.68ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_DESRM2.877e-1941.04ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP2_CHLPN2.877e-1938.85ATP-dependent Clp protease proteolytic subunit 2 O... [more]
CLPP1_PROMT2.877e-1940.58ATP-dependent Clp protease proteolytic subunit 1 O... [more]
CLPP1_PROM92.877e-1939.55ATP-dependent Clp protease proteolytic subunit 1 O... [more]
CLPP_SULDN3.758e-1938.41ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_MACCJ3.758e-1938.41ATP-dependent Clp protease proteolytic subunit OS=... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA22DG01RM1 IVIA1 Citrus clementina cDNA clone IC0AAA22DG01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877910 ID=FC877910; Name=FC877910; organism=Citrus clementina; type=EST; length=819bp
CAGAACTCACCAATTTAATTAGAAATAAACAAAAATAAAAAGCCATGTCG
ACGAGTTTCCTGCAAGCACCCATGGCGGCTTTAGTCCCGTCAACTTCAGT
TCACTCTCTTAGAAGCAAAAGCACCCGAAGTTTGAAGACCTTTTGCTCAG
CTAAAATTCCCAATCCCATGCCAGCACACATTAATCCTAACGACCCCTTT
CTTTCTAAACTCGCCGCTGCCGCGGCAGCCTCTCCGGAAGCGTTTGTCAA
TCGTCCTTCCAATTCCGGTACGCTGCCGTATTTGGATATCTACGATTCTC
CCACTCTTATGGCCTCCCCTGCCCAAGTGGAAAGATCGGCTACATACAAT
GAACATAGGCCAGATACACCGCCTCCGGATTTGCCTTCGCTGCTTCTTCA
TGGGAGGATTGTATACATTGGCATGCCGTTGGTGCCTGCTGTCACAGAGC
TTGTTGTGGCAGAACTGATGTACTTGCAGTGGATGGATCCCAAGGCACCT
ATATATCTTTATATTAATTCCACGGGTACGACTCGTGATGATGGTGAATC
GGTTGGGATGGAGAGTGAAGGCTTTGCCATTTATGATACATTGATGCAAA
TGAAGTGTGAGGTACATACAGTTGCTGTTGGAGCTGCTATAGGCATGGCT
TGTCTACTACTTGCTGCTGGAACTAAAGGAAAACGGTTTATGATGCCTCA
TGCCAAAATCATGATTCAGCAACCTCGTCTTCCATCATCTGGGTTGCTGC
CCGCTAGTGATGTTCTTATTCGTGCAAAAGAGGCAATGGTAAACAGAGAC
ACACTTGTNAAACTTCTGG
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