FC877912
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC877912 vs. ExPASy Swiss-Prot
Match: RL4_PONAB (60S ribosomal protein L4 OS=Pongo abelii GN=RPL4 PE=2 SV=1) HSP 1 Score: 278.87 bits (712), Expect = 2.781e-74 Identity = 135/255 (52.94%), Postives = 172/255 (67.45%), Query Frame = 2 Query: 65 SRPTVTIIGADGAASQNTHPLPNVFKAPIRSDIVQHVHTGMAKNKRQPYAVAENAGHQTSAESWGTGRAVARIPRVSGGGTHRAGQAAFGNQCRSGRMFAPTKVWRKWHQKINLGQKRFATVXXXXXXXXXXXXXXRGHRVGAIPEVPLVVSSAAFADGAMKKTSQXXXXXXXXXXXXDVEKVKDSRKLRAGKGKLRNRRHVQRRGPLVVYDPSKDGKELLQAFRNIPGVECCDVYALNLLQLAPGGHLGRFVIW 829 +RP +++ G +S LP VFKAPIR DIV VHT + KN RQPYAV+E AGHQTSAESWGTGRAVARIPRV GGGTHR+GQ AFGN CR GRMFAPTK WR+WH+++N QKR+A +GHR+ +PE+PLVV KKT + D++KV S+++RAGKGK+RNRR +QRRGP ++Y+ + +++AFRNIPG+ +V LN+L+LAPGGH+GRF IW Sbjct: 4 ARPLISVYSEKGESSGKNVTLPAVFKAPIRPDIVNFVHTNLRKNNRQPYAVSELAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNTTQKRYAICSALAASALPALVMSKGHRIEEVPELPLVVEDKV---EGYKKTKEAVLLLKKLKARNDIKKVYASQRMRAGKGKMRNRRRIQRRGPCIIYN---EDNGIIKAFRNIPGITLLNVSKLNILKLAPGGHVGRFCIW 252
BLAST of FC877912 vs. ExPASy Swiss-Prot
Match: RL4_MOUSE (60S ribosomal protein L4 OS=Mus musculus GN=Rpl4 PE=1 SV=3) HSP 1 Score: 278.87 bits (712), Expect = 2.781e-74 Identity = 135/255 (52.94%), Postives = 172/255 (67.45%), Query Frame = 2 Query: 65 SRPTVTIIGADGAASQNTHPLPNVFKAPIRSDIVQHVHTGMAKNKRQPYAVAENAGHQTSAESWGTGRAVARIPRVSGGGTHRAGQAAFGNQCRSGRMFAPTKVWRKWHQKINLGQKRFATVXXXXXXXXXXXXXXRGHRVGAIPEVPLVVSSAAFADGAMKKTSQXXXXXXXXXXXXDVEKVKDSRKLRAGKGKLRNRRHVQRRGPLVVYDPSKDGKELLQAFRNIPGVECCDVYALNLLQLAPGGHLGRFVIW 829 +RP +++ G +S LP VFKAPIR DIV VHT + KN RQPYAV+E AGHQTSAESWGTGRAVARIPRV GGGTHR+GQ AFGN CR GRMFAPTK WR+WH+++N QKR+A +GHR+ +PE+PLVV KKT + D++KV S+++RAGKGK+RNRR +QRRGP ++Y+ + +++AFRNIPG+ +V LN+L+LAPGGH+GRF IW Sbjct: 4 ARPLISVYSEKGESSGKNVTLPAVFKAPIRPDIVNFVHTNLRKNNRQPYAVSELAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNTTQKRYAICSALAASALPALVMSKGHRIEEVPELPLVVEDKV---EGYKKTKEAVQLLKKLKAWNDIKKVYASQRMRAGKGKMRNRRRIQRRGPCIIYN---EDNGIIKAFRNIPGITLLNVSKLNILKLAPGGHVGRFCIW 252
BLAST of FC877912 vs. ExPASy Swiss-Prot
Match: RL4_HUMAN (60S ribosomal protein L4 OS=Homo sapiens GN=RPL4 PE=1 SV=5) HSP 1 Score: 278.87 bits (712), Expect = 2.781e-74 Identity = 135/255 (52.94%), Postives = 172/255 (67.45%), Query Frame = 2 Query: 65 SRPTVTIIGADGAASQNTHPLPNVFKAPIRSDIVQHVHTGMAKNKRQPYAVAENAGHQTSAESWGTGRAVARIPRVSGGGTHRAGQAAFGNQCRSGRMFAPTKVWRKWHQKINLGQKRFATVXXXXXXXXXXXXXXRGHRVGAIPEVPLVVSSAAFADGAMKKTSQXXXXXXXXXXXXDVEKVKDSRKLRAGKGKLRNRRHVQRRGPLVVYDPSKDGKELLQAFRNIPGVECCDVYALNLLQLAPGGHLGRFVIW 829 +RP +++ G +S LP VFKAPIR DIV VHT + KN RQPYAV+E AGHQTSAESWGTGRAVARIPRV GGGTHR+GQ AFGN CR GRMFAPTK WR+WH+++N QKR+A +GHR+ +PE+PLVV KKT + D++KV S+++RAGKGK+RNRR +QRRGP ++Y+ + +++AFRNIPG+ +V LN+L+LAPGGH+GRF IW Sbjct: 4 ARPLISVYSEKGESSGKNVTLPAVFKAPIRPDIVNFVHTNLRKNNRQPYAVSELAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNTTQKRYAICSALAASALPALVMSKGHRIEEVPELPLVVEDKV---EGYKKTKEAVLLLKKLKAWNDIKKVYASQRMRAGKGKMRNRRRIQRRGPCIIYN---EDNGIIKAFRNIPGITLLNVSKLNILKLAPGGHVGRFCIW 252
BLAST of FC877912 vs. ExPASy Swiss-Prot
Match: RL4_BOVIN (60S ribosomal protein L4 OS=Bos taurus GN=RPL4 PE=2 SV=3) HSP 1 Score: 278.87 bits (712), Expect = 2.781e-74 Identity = 135/255 (52.94%), Postives = 172/255 (67.45%), Query Frame = 2 Query: 65 SRPTVTIIGADGAASQNTHPLPNVFKAPIRSDIVQHVHTGMAKNKRQPYAVAENAGHQTSAESWGTGRAVARIPRVSGGGTHRAGQAAFGNQCRSGRMFAPTKVWRKWHQKINLGQKRFATVXXXXXXXXXXXXXXRGHRVGAIPEVPLVVSSAAFADGAMKKTSQXXXXXXXXXXXXDVEKVKDSRKLRAGKGKLRNRRHVQRRGPLVVYDPSKDGKELLQAFRNIPGVECCDVYALNLLQLAPGGHLGRFVIW 829 +RP +++ G +S LP VFKAPIR DIV VHT + KN RQPYAV+E AGHQTSAESWGTGRAVARIPRV GGGTHR+GQ AFGN CR GRMFAPTK WR+WH+++N QKR+A +GHR+ +PE+PLVV KKT + D++KV S+++RAGKGK+RNRR +QRRGP ++Y+ + +++AFRNIPG+ +V LN+L+LAPGGH+GRF IW Sbjct: 4 ARPLISVYSEKGESSGKNVTLPAVFKAPIRPDIVNFVHTNLRKNNRQPYAVSELAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNTTQKRYAICSALAASALPALVMSKGHRIEEVPELPLVVEDKV---EGYKKTKEAVLLLKKLKAWNDIKKVYASQRMRAGKGKMRNRRRIQRRGPCIIYN---EDNGIIKAFRNIPGITLLNVSKLNILKLAPGGHVGRFCIW 252
BLAST of FC877912 vs. ExPASy Swiss-Prot
Match: RL4_RAT (60S ribosomal protein L4 OS=Rattus norvegicus GN=Rpl4 PE=1 SV=3) HSP 1 Score: 276.559 bits (706), Expect = 1.380e-73 Identity = 135/255 (52.94%), Postives = 172/255 (67.45%), Query Frame = 2 Query: 65 SRPTVTIIGADGAASQNTHPLPNVFKAPIRSDIVQHVHTGMAKNKRQPYAVAENAGHQTSAESWGTGRAVARIPRVSGGGTHRAGQAAFGNQCRSGRMFAPTKVWRKWHQKINLGQKRFATVXXXXXXXXXXXXXXRGHRVGAIPEVPLVVSSAAFADGAMKKTSQXXXXXXXXXXXXDVEKVKDSRKLRAGKGKLRNRRHVQRRGPLVVYDPSKDGKELLQAFRNIPGVECCDVYALNLLQLAPGGHLGRFVIW 829 +RP +++ G +S LP VFKAPIR DIV VHT + KN RQPYAV+E AGHQTSAESWGTGRAVARIPRV GGGTHR+GQ AFGN CR GRMFAPTK WR+WH+++N QKR+A +GH V +PE+PLVV + KKT + D++KV S+++RAGKGK+RNRR +QRRGP ++Y+ + +++AFRNIPG+ +V LN+L+LAPGGH+GRF IW Sbjct: 4 ARPLISVYSEKGESSGKNVTLPAVFKAPIRPDIVNFVHTNLRKNNRQPYAVSELAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNTTQKRYAICSALAASALPALVMSKGHCVEEVPELPLVVEDKV---ESYKKTKEAVQLLKKLKAWNDIKKVYASQRMRAGKGKMRNRRRIQRRGPCIIYN---EDNGIIKAFRNIPGITLLNVSKLNILKLAPGGHVGRFCIW 252
BLAST of FC877912 vs. ExPASy Swiss-Prot
Match: RL4_MACFA (60S ribosomal protein L4 OS=Macaca fascicularis GN=RPL4 PE=2 SV=1) HSP 1 Score: 276.559 bits (706), Expect = 1.380e-73 Identity = 134/255 (52.55%), Postives = 171/255 (67.06%), Query Frame = 2 Query: 65 SRPTVTIIGADGAASQNTHPLPNVFKAPIRSDIVQHVHTGMAKNKRQPYAVAENAGHQTSAESWGTGRAVARIPRVSGGGTHRAGQAAFGNQCRSGRMFAPTKVWRKWHQKINLGQKRFATVXXXXXXXXXXXXXXRGHRVGAIPEVPLVVSSAAFADGAMKKTSQXXXXXXXXXXXXDVEKVKDSRKLRAGKGKLRNRRHVQRRGPLVVYDPSKDGKELLQAFRNIPGVECCDVYALNLLQLAPGGHLGRFVIW 829 +RP +++ G +S LP VFKAPIR DIV VHT + KN RQPYAV+E AGHQTSAESWGTGRAVARIPRV GGGTHR+GQ AFGN CR GRMFAPTK WR+WH+++N QKR+A +GH + +PE+PLVV KKT + D++KV S+++RAGKGK+RNRR +QRRGP ++Y+ + +++AFRNIPG+ +V LN+L+LAPGGH+GRF IW Sbjct: 4 ARPLISVYSEKGESSGKNVTLPAVFKAPIRPDIVNFVHTNLRKNNRQPYAVSELAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNTTQKRYAICSALAASALPALVMSKGHSIEEVPELPLVVEDKV---EGYKKTKEAVLLLKKLKAWNDIKKVYASQRMRAGKGKMRNRRRIQRRGPCIIYN---EDNGIIKAFRNIPGITLLNVSKLNILKLAPGGHVGRFCIW 252
BLAST of FC877912 vs. ExPASy Swiss-Prot
Match: RL4_CANFA (60S ribosomal protein L4 OS=Canis familiaris GN=RPL4 PE=1 SV=2) HSP 1 Score: 273.863 bits (699), Expect = 8.948e-73 Identity = 133/255 (52.16%), Postives = 170/255 (66.67%), Query Frame = 2 Query: 65 SRPTVTIIGADGAASQNTHPLPNVFKAPIRSDIVQHVHTGMAKNKRQPYAVAENAGHQTSAESWGTGRAVARIPRVSGGGTHRAGQAAFGNQCRSGRMFAPTKVWRKWHQKINLGQKRFATVXXXXXXXXXXXXXXRGHRVGAIPEVPLVVSSAAFADGAMKKTSQXXXXXXXXXXXXDVEKVKDSRKLRAGKGKLRNRRHVQRRGPLVVYDPSKDGKELLQAFRNIPGVECCDVYALNLLQLAPGGHLGRFVIW 829 +RP +++ G +S LP VFKAPIR DIV VHT + KN RQPYAV+E AGHQTSAESWGTGRAVARIPRV GGGTHR+GQ AFGN CR GRMFAPTK WR+WH+++N QKR+A +GHR+ +PE+PLVV KKT + D++KV S+++RAGKGK+RNRR +QRRGP ++Y+ + +++AFR PG+ +V LN+L+LAPGGH+GRF IW Sbjct: 4 ARPLISVYSEKGESSGKNVTLPAVFKAPIRPDIVNFVHTNLRKNNRQPYAVSELAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNTTQKRYAICSALACLSLPALVMSKGHRIEEVPELPLVVEDKV---EGYKKTKEAVLLLKKLKAWNDIKKVYASQRMRAGKGKMRNRRRIQRRGPCIIYN---EDNGIIKAFRKHPGITLLNVSKLNILKLAPGGHVGRFCIW 252
BLAST of FC877912 vs. ExPASy Swiss-Prot
Match: RL4_TRYBB (60S ribosomal protein L4 OS=Trypanosoma brucei brucei GN=RPL4 PE=3 SV=1) HSP 1 Score: 257.299 bits (656), Expect = 4.384e-69 Identity = 133/255 (52.16%), Postives = 167/255 (65.49%), Query Frame = 2 Query: 65 SRPTVTIIGADGAASQNTHPLPNVFKAPIRSDIVQHVHTGMAKNKRQPYAVAENAGHQTSAESWGTGRAVARIPRVSGGGTHRAGQAAFGNQCRSGRMFAPTKVWRKWHQKINLGQKRFATVXXXXXXXXXXXXXXRGHRVGAIPEVPLVVSSAAFADGAMKKTSQXXXXXXXXXXXXDVEKVKDSRKLRAGKGKLRNRRHVQRRGPLVVYDPSKDGKELLQAFRNIPGVECCDVYALNLLQLAPGGHLGRFVIW 829 +RP+V++ A T LP VF APIR D+VQ VHT MAKN RQPYAV +G + S ESWGTGRAVARIPR+ GGGT +G AFGN CR GRMFAPTK++R+WH+KINL QKRFA V RGH++ + EVPLVV A +KT + DV +V DSR++RAG+GK+RNRR+V RRGP++V +K +AFRNI G++ +V +LNLL LAPGGH+GRF+IW Sbjct: 3 ARPSVSVYSASEDKVVGTCSLPAVFTAPIRHDVVQFVHTNMAKNSRQPYAVNRLSGMKHSTESWGTGRAVARIPRIHGGGTSMSGAGAFGNMCRGGRMFAPTKIFRRWHRKINLHQKRFAVVSALAASSLPALVMSRGHKIENVAEVPLVVEDGV---RAYEKTKEAMTFLKTVGAIDDVNRVNDSRQIRAGRGKMRNRRYVARRGPMLVMPDNKG----TRAFRNIFGLDLANVNSLNLLHLAPGGHVGRFIIW 250 HSP 2 Score: 26.1794 bits (56), Expect = 4.384e-69 Identity = 10/20 (50.00%), Postives = 15/20 (75.00%), Query Frame = 1 Query: 835 NAFAALDSVYGSTTEPSELK 894 +AF LD ++G+ TEPS +K Sbjct: 253 SAFEKLDKIFGTFTEPSTVK 272
BLAST of FC877912 vs. ExPASy Swiss-Prot
Match: RL4_DROME (60S ribosomal protein L4 OS=Drosophila melanogaster GN=RpL4 PE=2 SV=2) HSP 1 Score: 259.225 bits (661), Expect = 7.451e-69 Identity = 135/256 (52.73%), Postives = 173/256 (67.58%), Query Frame = 2 Query: 65 SRPTVTIIGADGAASQNTHP-LPNVFKAPIRSDIVQHVHTGMAKNKRQPYAVAENAGHQTSAESWGTGRAVARIPRVSGGGTHRAGQAAFGNQCRSGRMFAPTKVWRKWHQKINLGQKRFATVXXXXXXXXXXXXXXRGHRVGAIPEVPLVVSSAAFADGAMKKTSQXXXXXXXXXXXXDVEKVKDSRKLRAGKGKLRNRRHVQRRGPLVVYDPSKDGKELLQAFRNIPGVECCDVYALNLLQLAPGGHLGRFVIW 829 +RP V++ +++ + LP VFKAPIR D+V VH + +N RQ YAV+E AGHQTSAESWGTGRAVARIPRV GGGTHR+GQ AFGN CR GRMFAPTK +R+WH+K+N+ Q+R+A V +GH + + E PLVVS ++KT Q D++KV S++ RAG+G +R+RR + RRGPLVVYD KD + L +AFRNIPG+E +V LNLL+LAPGGH+GRFVIW Sbjct: 6 ARPLVSVYTEKNEPAKDKNICLPAVFKAPIRPDVVNEVHQLLRRNNRQAYAVSELAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTFRRWHRKVNVNQRRYALVSAIAASGVPALVQSKGHVIDGVSEFPLVVSDEV---QKVQKTKQAVIFLRRLKIWADIQKVYKSQRFRAGRGTMRDRRRIARRGPLVVYD--KD-EGLRKAFRNIPGIETINVDKLNLLKLAPGGHVGRFVIW 255 HSP 2 Score: 23.483 bits (49), Expect = 7.451e-69 Identity = 9/21 (42.86%), Postives = 16/21 (76.19%), Query Frame = 1 Query: 835 NAFAALDSVYGSTTEPSELKR 897 +AFA L+ ++G+ +PS LK+ Sbjct: 258 SAFARLNDLFGTWKKPSTLKK 278
BLAST of FC877912 vs. ExPASy Swiss-Prot
Match: RL4_DICDI (60S ribosomal protein L4 OS=Dictyostelium discoideum GN=rpl4 PE=1 SV=1) HSP 1 Score: 248.44 bits (633), Expect = 4.026e-65 Identity = 132/256 (51.56%), Postives = 159/256 (62.11%), Query Frame = 2 Query: 65 SRPTVTIIGADGAASQNTHPLPNVFKAPIRSDIVQHVHTGMAKNKRQPYAVAENAGHQTSAESWGTGRAVARIPRVSGGGTHRAGQAAFGNQCRSGRMFAPTKVWRKWHQKINLGQKRFATVXXXXXXXXXXXXXXRGHRVGAIPEVPLVVSSAAFADGAMKKTSQXXXXXXXXXXXXDVEKVKDSRKLRAGKGKLRNRRHVQRRGPLVVYDPSKDGKELL-QAFRNIPGVECCDVYALNLLQLAPGGHLGRFVIW 829 +RP V + A LPNV PIR D+V VHT + KN RQ Y A AG QTSAESWGTGRAVARIPRV G GTHR+GQ AFGN CR GRM+ P K WR+W++K+N+ QKR+A V RGHR+ I EVPLV+++ + ++KT DV KV DS+ +RAG GK RNRR+ R+GPLVV GK + QA RNIPGVE +V LNLL+LAPGGHLGRF+IW Sbjct: 3 TRPFVQVFDAQNKVVGKVK-LPNVLTTPIRPDLVNFVHTNLNKNARQAYGAAPYAGEQTSAESWGTGRAVARIPRVPGSGTHRSGQGAFGNMCRGGRMYGPNKTWRRWNRKVNVNQKRYAVVSALAASAVPALVMARGHRINGINEVPLVIANESV--DTLQKTKAAVELLKKINAYADVTKVIDSKHIRAGAGKARNRRYKVRKGPLVVV----SGKTTVSQALRNIPGVEVANVSRLNLLKLAPGGHLGRFIIW 251 The following BLAST results are available for this feature:
BLAST of FC877912 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 69
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >FC877912 ID=FC877912; Name=FC877912; organism=Citrus clementina; type=EST; length=898bpback to top |