FC877912

Overview
NameFC877912
Unique NameFC877912
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length898
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC877912 vs. ExPASy Swiss-Prot
Match: RL4_ARCFU (50S ribosomal protein L4P OS=Archaeoglobus fulgidus GN=rpl4p PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 2.640e-24
Identity = 78/235 (33.19%), Postives = 113/235 (48.09%), Query Frame = 2
Query:  125 LPNVFKAPIRSDIVQHVHTGMAKNKRQPYAVAENAGHQTSAESWGTGRAVARIPRVSGGGTHRAGQAAFGNQCRSGRMFAPTKVWRKWHQKINLGQKRFATVXXXXXXXXXXXXXXRGHRVGAIPEVPLVVSSAAFADGAMKKTSQXXXXXXXXXXXXDVEKVKDSRKLRAGKGKLRNRRHVQRRGPLVVYDPSKDGKELLQAFRNIPGVECCDVYALNLLQLAPGGHLGRFVIW 829
            LP VF    R DI++     +  ++RQPY     +G   S E+WG G   AR+PR   G      +A    Q   GR   P K  RKW +KIN  + R A                R H      E+P VVS+      ++K+T              DVE+ K+ ++ RAG+GK+R RR+V+++  L+V     DG  +++A +N+PGV+   V  LN+  LAPG H GR  +W
Sbjct:   18 LPEVFAEEFRPDIIKRAVLALQSHRRQPYGPNPLSGVDYSWENWGPGHGYARVPRWKLG-----RRAVVVPQAVGGRRAHPPKPERKWAEKINKKEMRKALKSAIAATANEELVRQRSHVFEG--ELPKVVSNEL---ESVKRTKDVAEVFRAIGVYADVERAKERKRYRAGRGKMRGRRYVKKKSVLLVVG-KDDG--VVKAAKNLPGVDAVVVKDLNVELLAPGCHPGRLTVW 239          
BLAST of FC877912 vs. ExPASy Swiss-Prot
Match: RL4_METMP (50S ribosomal protein L4P OS=Methanococcus maripaludis GN=rpl4p PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 3.448e-24
Identity = 79/251 (31.47%), Postives = 119/251 (47.41%), Query Frame = 2
Query:   77 VTIIGADGAASQNTHPLPNVFKAPIRSDIVQHVHTGMAKNKRQPYAVAENAGHQTSAESWGTGRAVARIPRVSGGGTHRAGQAAFGNQCRSGRMFAPTKVWRKWHQKINLGQKRFATVXXXXXXXXXXXXXXRGHRVGAIPEVPLVVSSAAFADGAMKKTSQXXXXXXXXXXXXDVEKVKDSRKLRAGKGKLRNRRHVQRRGPLVVYDPSKDGKELLQAFRNIPGVECCDVYALNLLQLAPGGHLGRFVIW 829
            V +   DG+   +   LP VF+A  R D+++         K QP      AG++TSA+S G G   AR+ R +       G  AF  Q   GR   P KV +   ++IN  +K  A                RGH++  +P +PLVV +A F   ++ KT +            D+E+ KD  K+RAG+GKLR R++++ +  LVV     D  E + A RN+ GV+      L+ + +APG   GR  +W
Sbjct:    3 VKVYNLDGSEKGDIE-LPAVFEAEYRPDLIKRAVISSLTAKLQPKGCDAFAGYRTSAKSIGKGHGKARVRRTA------QGAGAFVPQAVGGRRAHPPKVEKILFERINRKEKLKALASAIAASANPEIVSARGHKIEGVPSLPLVV-NAEFE--SLVKTKEVLEVFKTLKLDADLERAKDGVKIRAGRGKLRGRKYIKPKSVLVVVG---DACEAITASRNLAGVDVITANDLSAIHIAPGTMAGRLTLW 240          
BLAST of FC877912 vs. ExPASy Swiss-Prot
Match: RL4_METBF (50S ribosomal protein L4P OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rpl4p PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 3.448e-24
Identity = 75/235 (31.91%), Postives = 111/235 (47.23%), Query Frame = 2
Query:  125 LPNVFKAPIRSDIVQHVHTGMAKNKRQPYAVAENAGHQTSAESWGTGRAVARIPRVSGGGTHRAGQAAFGNQCRSGRMFAPTKVWRKWHQKINLGQKRFATVXXXXXXXXXXXXXXRGHRVGAIPEVPLVVSSAAFADGAMKKTSQXXXXXXXXXXXXDVEKVKDSRKLRAGKGKLRNRRHVQRRGPLVVYDPSKDGKELLQAFRNIPGVECCDVYALNLLQLAPGGHLGRFVIW 829
            LP+VF    R D+++        N+ QPY     AG +TSA  WG+GR  + +PR+       + +AA     R GR   P K      +K+N  ++R+A                RGH   A  E+P+V  +A      + KT Q            DV + K  R +RAG+GKLR R++  ++  L+V   + +   +L+A RN+ GV+   V +LN   LAPG H GR  IW
Sbjct:   19 LPDVFDVDYRPDLIKKAVLAAQANRLQPYGPRLYAGMETSARGWGSGRGTSHVPRLV-----NSSRAARVPHARGGRRAHPPKPEADRSEKVNTKERRYAIRSAIAATRDPTLVSLRGHIFEA--ELPIVTENAL---EDLDKTKQVIEFLQAIGVYEDVLRAKYGRHIRAGRGKLRGRKYKHKKSVLIV---AGESAPILKAARNLSGVDVATVDSLNAELLAPGTHAGRLTIW 240          
BLAST of FC877912 vs. ExPASy Swiss-Prot
Match: RL4_SULTO (50S ribosomal protein L4P OS=Sulfolobus tokodaii GN=rpl4p PE=3 SV=2)

HSP 1 Score: 112.079 bits (279), Expect = 4.503e-24
Identity = 75/235 (31.91%), Postives = 115/235 (48.94%), Query Frame = 2
Query:  125 LPNVFKAPIRSDIVQHVHTGMAKNKRQPYAVAENAGHQTSAESWGTGRAVARIPRVSGGGTHRAGQAAFGNQCRSGRMFAPTKVWRKWHQKINLGQKRFATVXXXXXXXXXXXXXXRGHRVGAIPEVPLVVSSAAFADGAMKKTSQXXXXXXXXXXXXDVEKVKDSRKLRAGKGKLRNRRHVQRRGPLVVYDPSKDGKELLQAFRNIPGVECCDVYALNLLQLAPGGHLGRFVIW 829
            LP  F  P+R D+++ V         QP      AG +TSA S+G    +AR+PRV        G+AA       GR+  P  V +K  +++N  +K+ A +              RGH V +I  +P++V         + KT +            DVE+VKD  ++R+GKGK+R RR+ + +GPL V    ++    ++A  NIPGV+      L+++ LAPGGH GR  I+
Sbjct:   25 LPIFFSYPVRKDLIRRVFISEFTKALQPKGRDPMAGKRTSALSFGINLGLARVPRVK-----TTGEAALAPNTVGGRLAFPPTVEKKLVEEVNKKEKKLAIISALSATANMNFVKNRGH-VFSIDTLPIIVVDDITK---LTKTKEIIEVLESLKVYEDVERVKDRIRIRSGKGKMRGRRYKEPKGPLFVI--HENNPVFVKAASNIPGVDVILASDLSVIHLAPGGHPGRLTIY 248          
BLAST of FC877912 vs. ExPASy Swiss-Prot
Match: RL4_SULAC (50S ribosomal protein L4P OS=Sulfolobus acidocaldarius GN=rpl4p PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 1.003e-23
Identity = 71/235 (30.21%), Postives = 116/235 (49.36%), Query Frame = 2
Query:  125 LPNVFKAPIRSDIVQHVHTGMAKNKRQPYAVAENAGHQTSAESWGTGRAVARIPRVSGGGTHRAGQAAFGNQCRSGRMFAPTKVWRKWHQKINLGQKRFATVXXXXXXXXXXXXXXRGHRVGAIPEVPLVVSSAAFADGAMKKTSQXXXXXXXXXXXXDVEKVKDSRKLRAGKGKLRNRRHVQRRGPLVVYDPSKDGKELLQAFRNIPGVECCDVYALNLLQLAPGGHLGRFVIW 829
            LP  F  P+R D+++ V         QP      AG +TSA S+G    +AR+PRV G     +G+AA       GR+  P    ++  +++NL +K+   +              RGHR  +   VP+++    F +  + K  +            D+++VK+S+ +RAGKGK+R RR+   +GPL+V    K    ++++  NIPGV       ++++ LAPGGH GR  I+
Sbjct:   25 LPLFFSYPVRKDLIRRVFLSEFTKSLQPKGRDPLAGKRTSALSFGINLGIARVPRVKG-----SGEAALAPNTVGGRLAFPPTTEKRLVEEVNLKEKKLGIISALAATADPNFVKARGHRFTS-NNVPIILVD-DFEN--ISKAKEIMDILKSIGVVDDIKRVKESKGVRAGKGKMRGRRYQIAKGPLIVVSNHK--SPVVESASNIPGVNVVSANLVSVIHLAPGGHPGRLTIY 248          
BLAST of FC877912 vs. ExPASy Swiss-Prot
Match: RL4_THEGJ (50S ribosomal protein L4P OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=rpl4p PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.711e-23
Identity = 78/237 (32.91%), Postives = 110/237 (46.41%), Query Frame = 2
Query:  125 LPNVFKAPIRSDIVQHVHTGMAKNKRQPYAVAENAGHQTSAESWGTGRAVARIPRVSGGGTHRAGQAAFGNQCRSGRMFAPTKVWRKWHQKINLGQKRFATVXXXXXXXXXXXXXXRGHRVGAIPEVPLVVSSAAFADGAMK--KTSQXXXXXXXXXXXXDVEKVKDSRKLRAGKGKLRNRRHVQRRGPLVVYDPSKDGKELLQAFRNIPGVECCDVYALNLLQLAPGGHLGRFVIW 829
            LP VF  P R D+++        ++ QP      AG +   E+ G G  +AR+ R+          AAF    R GR   P KV +   + IN  ++R A +              RGH V  +P  PLVV      D   K  KT+Q            D+E+ K + K+RAGKGK+R RR+ + +GPL+V   ++    ++Q  RN PGV+   V  L +  LAPG H GR  IW
Sbjct:   18 LPKVFSTPFRPDLIRRAVIASWTHRIQPQGRDPLAGKRRVTENIGKGHGMARVERIKTPPRF----AAFVPFARGGRRTHPPKVEKIIWEDINKKERRLAIMSAIAATANPDLVRARGHVVDNVPAFPLVV-----VDDLQKVFKTAQTREIFKKLGIWDDIERAKRNTKIRAGKGKMRGRRYKKAKGPLIVVAKNEG---IVQGARNHPGVDVVTVDNLGVELLAPGTHPGRLTIW 242          
BLAST of FC877912 vs. ExPASy Swiss-Prot
Match: RL4_METMA (50S ribosomal protein L4P OS=Methanosarcina mazei GN=rpl4p PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.711e-23
Identity = 73/235 (31.06%), Postives = 113/235 (48.09%), Query Frame = 2
Query:  125 LPNVFKAPIRSDIVQHVHTGMAKNKRQPYAVAENAGHQTSAESWGTGRAVARIPRVSGGGTHRAGQAAFGNQCRSGRMFAPTKVWRKWHQKINLGQKRFATVXXXXXXXXXXXXXXRGHRVGAIPEVPLVVSSAAFADGAMKKTSQXXXXXXXXXXXXDVEKVKDSRKLRAGKGKLRNRRHVQRRGPLVVYDPSKDGKELLQAFRNIPGVECCDVYALNLLQLAPGGHLGRFVIW 829
            LP VF A  R D+++        N+ QPY  +  AG +TSA  WG+GR V+ +PR+       + +AA     + GR   P K      +K+N  ++R+A                RGH   A  E+P+V  +       +++T Q            DV + K  R +RAG+GKLR R++  ++  L+V   + +   +L+A RN+ GV+   V +LN   LAPG H GR  +W
Sbjct:   19 LPAVFDADYRPDLIKKAVLAAQANRLQPYGPSLYAGMKTSATGWGSGRGVSHVPRLK-----NSSRAARVPHAKGGRRAHPPKPEADRSEKVNTKERRYAIRSAIAATIDPTLVNLRGHIFEA--ELPIVAVNDL---ENLERTKQVIEFLEAAGLYEDVLRAKYGRHIRAGRGKLRGRKYKHKKSVLIV---AGENSPILKAARNLSGVDVVTVDSLNAELLAPGTHAGRLTVW 240          
BLAST of FC877912 vs. ExPASy Swiss-Prot
Match: RL4_META3 (50S ribosomal protein L4P OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=rpl4p PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 2.235e-23
Identity = 75/251 (29.88%), Postives = 115/251 (45.82%), Query Frame = 2
Query:   77 VTIIGADGAASQNTHPLPNVFKAPIRSDIVQHVHTGMAKNKRQPYAVAENAGHQTSAESWGTGRAVARIPRVSGGGTHRAGQAAFGNQCRSGRMFAPTKVWRKWHQKINLGQKRFATVXXXXXXXXXXXXXXRGHRVGAIPEVPLVVSSAAFADGAMKKTSQXXXXXXXXXXXXDVEKVKDSRKLRAGKGKLRNRRHVQRRGPLVVYDPSKDGKELLQAFRNIPGVECCDVYALNLLQLAPGGHLGRFVIW 829
            V +   DG+    T  L  VF+   R D+++         + QP  V   AG +TSA+S G G   AR+ R   G      QA  G +C       P KV +  H+++N  ++  A                RGH V  +P VPL+VS       ++KKT +            DV++ KD  K+R+G GKLR R++ + +  LVV   + D    ++A +N+PGV+      L ++ +APG   GR  +W
Sbjct:    3 VKVYNMDGSEKGETE-LSAVFETEYRPDLIKRAFLSSFTARLQPKGVDLMAGKRTSAKSIGKGHGRARVQRTGQGAGAFVPQAVGGRRCH------PPKVEKILHERVNKKERLKALASAIAASANIEMVKNRGHVVETVPSVPLIVSDDF---ESLKKTKEVLETFKNLGLDGDVQRAKDGIKIRSGIGKLRGRKYRKPKSVLVVVSGACDA---VKASKNLPGVDVISANDLGVMHIAPGADSGRLTLW 240          
BLAST of FC877912 vs. ExPASy Swiss-Prot
Match: RL4_PYRKO (50S ribosomal protein L4P OS=Pyrococcus kodakaraensis GN=rpl4p PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.919e-23
Identity = 76/237 (32.07%), Postives = 111/237 (46.84%), Query Frame = 2
Query:  125 LPNVFKAPIRSDIVQHVHTGMAKNKRQPYAVAENAGHQTSAESWGTGRAVARIPRVSGGGTHRAGQAAFGNQCRSGRMFAPTKVWRKWHQKINLGQKRFATVXXXXXXXXXXXXXXRGHRVGAIPEVPLVVSSAAFADGAMK--KTSQXXXXXXXXXXXXDVEKVKDSRKLRAGKGKLRNRRHVQRRGPLVVYDPSKDGKELLQAFRNIPGVECCDVYALNLLQLAPGGHLGRFVIW 829
            LP VF  P R D+++        ++ QP      AG +   E+ G G  +AR+ R+          AAF      GR   P KV +   + IN  ++R A +              RGH V  + ++PLVV+     D   K  KT+Q            D+E+ K + K+RAGKGK+R RR+ + +GPL+V   ++    ++Q  RN PGV+   V  L +  LAPG H GR  IW
Sbjct:   18 LPKVFSTPFRPDLIRRAVIASWTHRIQPQGRDPQAGKRRVTENIGKGHGMARVERIKTSPRF----AAFVPFAVGGRRTHPPKVEKIIWEDINKKERRLAIMSAIAATANYDLVRARGHVVDNVVQIPLVVT-----DDLQKVFKTAQTREIFKKLGVWDDIERAKKNTKIRAGKGKMRGRRYKKAKGPLIVVAKNEG---IVQGARNHPGVDVVTVDNLGVEYLAPGTHPGRLTIW 242          
BLAST of FC877912 vs. ExPASy Swiss-Prot
Match: RL4_METAC (50S ribosomal protein L4P OS=Methanosarcina acetivorans GN=rpl4p PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 3.812e-23
Identity = 72/235 (30.64%), Postives = 113/235 (48.09%), Query Frame = 2
Query:  125 LPNVFKAPIRSDIVQHVHTGMAKNKRQPYAVAENAGHQTSAESWGTGRAVARIPRVSGGGTHRAGQAAFGNQCRSGRMFAPTKVWRKWHQKINLGQKRFATVXXXXXXXXXXXXXXRGHRVGAIPEVPLVVSSAAFADGAMKKTSQXXXXXXXXXXXXDVEKVKDSRKLRAGKGKLRNRRHVQRRGPLVVYDPSKDGKELLQAFRNIPGVECCDVYALNLLQLAPGGHLGRFVIW 829
            LP VF A  R D+++        N+ QPY     +G +TSA  WG+GR V+ +PR+       + +AA     + GR   P K      +K+N  ++R+A                RGH   A  E+P+V  +      ++++T Q            DV + K  R +RAG+GKLR R++  ++  L+V   + +   +L+A RN+ GV+   V +LN   LAPG H GR  +W
Sbjct:   19 LPAVFDADYRPDLIKKAVLAAQANRLQPYGPRLYSGMETSARGWGSGRGVSHVPRLV-----NSSRAARVPHAKGGRRAHPPKPEADRSEKVNTKERRYAIRSAIAATTDPTLVSLRGHIFEA--ELPIVAVNDL---ESLERTKQVIEFLEAAGLYEDVLRAKYGRHIRAGRGKLRGRKYKHKKSVLIV---AGENTPILKAARNLSGVDVVTVDSLNAELLAPGTHAGRLTVW 240          
The following BLAST results are available for this feature:
BLAST of FC877912 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 69
Match NameE-valueIdentityDescription
RL4_ARCFU2.640e-2433.1950S ribosomal protein L4P OS=Archaeoglobus fulgidu... [more]
RL4_METMP3.448e-2431.4750S ribosomal protein L4P OS=Methanococcus maripal... [more]
RL4_METBF3.448e-2431.9150S ribosomal protein L4P OS=Methanosarcina barker... [more]
RL4_SULTO4.503e-2431.9150S ribosomal protein L4P OS=Sulfolobus tokodaii G... [more]
RL4_SULAC1.003e-2330.2150S ribosomal protein L4P OS=Sulfolobus acidocalda... [more]
RL4_THEGJ1.711e-2332.9150S ribosomal protein L4P OS=Thermococcus gammatol... [more]
RL4_METMA1.711e-2331.0650S ribosomal protein L4P OS=Methanosarcina mazei ... [more]
RL4_META32.235e-2329.8850S ribosomal protein L4P OS=Methanococcus aeolicu... [more]
RL4_PYRKO2.919e-2332.0750S ribosomal protein L4P OS=Pyrococcus kodakaraen... [more]
RL4_METAC3.812e-2330.6450S ribosomal protein L4P OS=Methanosarcina acetiv... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA15CA11RM1 IVIA1 Citrus clementina cDNA clone IC0AAA15CA11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877912 ID=FC877912; Name=FC877912; organism=Citrus clementina; type=EST; length=898bp
CCGCGACGAGTCGACGATTGCTGGCATCCGCACCGCACCTACTAACCACA
CAGTTGTCAAGATGTCGCGTCCGACTGTCACGATCATTGGCGCCGATGGG
GCTGCCAGCCAGAACACCCACCCCCTGCCCAATGTCTTCAAGGCGCCCAT
CCGCTCGGACATTGTCCAGCACGTCCACACCGGCATGGCCAAGAACAAGC
GCCAGCCGTACGCCGTAGCTGAGAATGCTGGTCACCAGACCTCCGCCGAG
TCCTGGGGTACCGGTCGCGCTGTCGCCCGTATTCCTCGTGTCTCTGGTGG
TGGTACTCACCGTGCCGGTCAGGCCGCCTTCGGTAACCAGTGCCGTTCCG
GTCGCATGTTCGCACCCACCAAGGTCTGGCGCAAGTGGCACCAGAAGATC
AACCTTGGCCAGAAGCGTTTCGCCACCGTTTCCGCCATTGCTGCTTCTTC
CAGCGCTGCCCTTCTCCTCGCCCGTGGCCACCGTGTCGGTGCCATCCCTG
AGGTCCCTCTCGTCGTCTCCAGCGCCGCCTTCGCCGACGGTGCCATGAAG
AAGACCTCCCAGGCCGTCAACCTCCTCGCCGCCGTCGGTGCCGCCGCCGA
TGTCGAGAAGGTCAAGGACTCCCGCAAGCTTCGCGCCGGTAAGGGTAAGC
TGAGGAACCGTCGCCACGTCCAGCGTCGCGGCCCCCTGGTCGTCTACGAT
CCGTCCAAGGATGGCAAGGAGCTTCTCCAGGCCTTCCGCAACATCCCCGG
TGTCGAGTGCTGCGACGTCTACGCCCTCAACCTCCTCCAGCTCGCCCCTG
GTGGCCACCTTGGCCGTTTCGTCATCTGGTCGTCAACGCCTTCGCCGCCC
TCGACTCCGTCTACGGCAGCACCACCGAGCCCTCCGAGCTCAAGCGCG
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