FC877912
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC877912 vs. ExPASy Swiss-Prot
Match: RL4_ARCFU (50S ribosomal protein L4P OS=Archaeoglobus fulgidus GN=rpl4p PE=3 SV=1) HSP 1 Score: 112.849 bits (281), Expect = 2.640e-24 Identity = 78/235 (33.19%), Postives = 113/235 (48.09%), Query Frame = 2 Query: 125 LPNVFKAPIRSDIVQHVHTGMAKNKRQPYAVAENAGHQTSAESWGTGRAVARIPRVSGGGTHRAGQAAFGNQCRSGRMFAPTKVWRKWHQKINLGQKRFATVXXXXXXXXXXXXXXRGHRVGAIPEVPLVVSSAAFADGAMKKTSQXXXXXXXXXXXXDVEKVKDSRKLRAGKGKLRNRRHVQRRGPLVVYDPSKDGKELLQAFRNIPGVECCDVYALNLLQLAPGGHLGRFVIW 829 LP VF R DI++ + ++RQPY +G S E+WG G AR+PR G +A Q GR P K RKW +KIN + R A R H E+P VVS+ ++K+T DVE+ K+ ++ RAG+GK+R RR+V+++ L+V DG +++A +N+PGV+ V LN+ LAPG H GR +W Sbjct: 18 LPEVFAEEFRPDIIKRAVLALQSHRRQPYGPNPLSGVDYSWENWGPGHGYARVPRWKLG-----RRAVVVPQAVGGRRAHPPKPERKWAEKINKKEMRKALKSAIAATANEELVRQRSHVFEG--ELPKVVSNEL---ESVKRTKDVAEVFRAIGVYADVERAKERKRYRAGRGKMRGRRYVKKKSVLLVVG-KDDG--VVKAAKNLPGVDAVVVKDLNVELLAPGCHPGRLTVW 239
BLAST of FC877912 vs. ExPASy Swiss-Prot
Match: RL4_METMP (50S ribosomal protein L4P OS=Methanococcus maripaludis GN=rpl4p PE=3 SV=1) HSP 1 Score: 112.464 bits (280), Expect = 3.448e-24 Identity = 79/251 (31.47%), Postives = 119/251 (47.41%), Query Frame = 2 Query: 77 VTIIGADGAASQNTHPLPNVFKAPIRSDIVQHVHTGMAKNKRQPYAVAENAGHQTSAESWGTGRAVARIPRVSGGGTHRAGQAAFGNQCRSGRMFAPTKVWRKWHQKINLGQKRFATVXXXXXXXXXXXXXXRGHRVGAIPEVPLVVSSAAFADGAMKKTSQXXXXXXXXXXXXDVEKVKDSRKLRAGKGKLRNRRHVQRRGPLVVYDPSKDGKELLQAFRNIPGVECCDVYALNLLQLAPGGHLGRFVIW 829 V + DG+ + LP VF+A R D+++ K QP AG++TSA+S G G AR+ R + G AF Q GR P KV + ++IN +K A RGH++ +P +PLVV +A F ++ KT + D+E+ KD K+RAG+GKLR R++++ + LVV D E + A RN+ GV+ L+ + +APG GR +W Sbjct: 3 VKVYNLDGSEKGDIE-LPAVFEAEYRPDLIKRAVISSLTAKLQPKGCDAFAGYRTSAKSIGKGHGKARVRRTA------QGAGAFVPQAVGGRRAHPPKVEKILFERINRKEKLKALASAIAASANPEIVSARGHKIEGVPSLPLVV-NAEFE--SLVKTKEVLEVFKTLKLDADLERAKDGVKIRAGRGKLRGRKYIKPKSVLVVVG---DACEAITASRNLAGVDVITANDLSAIHIAPGTMAGRLTLW 240
BLAST of FC877912 vs. ExPASy Swiss-Prot
Match: RL4_METBF (50S ribosomal protein L4P OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rpl4p PE=3 SV=1) HSP 1 Score: 112.464 bits (280), Expect = 3.448e-24 Identity = 75/235 (31.91%), Postives = 111/235 (47.23%), Query Frame = 2 Query: 125 LPNVFKAPIRSDIVQHVHTGMAKNKRQPYAVAENAGHQTSAESWGTGRAVARIPRVSGGGTHRAGQAAFGNQCRSGRMFAPTKVWRKWHQKINLGQKRFATVXXXXXXXXXXXXXXRGHRVGAIPEVPLVVSSAAFADGAMKKTSQXXXXXXXXXXXXDVEKVKDSRKLRAGKGKLRNRRHVQRRGPLVVYDPSKDGKELLQAFRNIPGVECCDVYALNLLQLAPGGHLGRFVIW 829 LP+VF R D+++ N+ QPY AG +TSA WG+GR + +PR+ + +AA R GR P K +K+N ++R+A RGH A E+P+V +A + KT Q DV + K R +RAG+GKLR R++ ++ L+V + + +L+A RN+ GV+ V +LN LAPG H GR IW Sbjct: 19 LPDVFDVDYRPDLIKKAVLAAQANRLQPYGPRLYAGMETSARGWGSGRGTSHVPRLV-----NSSRAARVPHARGGRRAHPPKPEADRSEKVNTKERRYAIRSAIAATRDPTLVSLRGHIFEA--ELPIVTENAL---EDLDKTKQVIEFLQAIGVYEDVLRAKYGRHIRAGRGKLRGRKYKHKKSVLIV---AGESAPILKAARNLSGVDVATVDSLNAELLAPGTHAGRLTIW 240
BLAST of FC877912 vs. ExPASy Swiss-Prot
Match: RL4_SULTO (50S ribosomal protein L4P OS=Sulfolobus tokodaii GN=rpl4p PE=3 SV=2) HSP 1 Score: 112.079 bits (279), Expect = 4.503e-24 Identity = 75/235 (31.91%), Postives = 115/235 (48.94%), Query Frame = 2 Query: 125 LPNVFKAPIRSDIVQHVHTGMAKNKRQPYAVAENAGHQTSAESWGTGRAVARIPRVSGGGTHRAGQAAFGNQCRSGRMFAPTKVWRKWHQKINLGQKRFATVXXXXXXXXXXXXXXRGHRVGAIPEVPLVVSSAAFADGAMKKTSQXXXXXXXXXXXXDVEKVKDSRKLRAGKGKLRNRRHVQRRGPLVVYDPSKDGKELLQAFRNIPGVECCDVYALNLLQLAPGGHLGRFVIW 829 LP F P+R D+++ V QP AG +TSA S+G +AR+PRV G+AA GR+ P V +K +++N +K+ A + RGH V +I +P++V + KT + DVE+VKD ++R+GKGK+R RR+ + +GPL V ++ ++A NIPGV+ L+++ LAPGGH GR I+ Sbjct: 25 LPIFFSYPVRKDLIRRVFISEFTKALQPKGRDPMAGKRTSALSFGINLGLARVPRVK-----TTGEAALAPNTVGGRLAFPPTVEKKLVEEVNKKEKKLAIISALSATANMNFVKNRGH-VFSIDTLPIIVVDDITK---LTKTKEIIEVLESLKVYEDVERVKDRIRIRSGKGKMRGRRYKEPKGPLFVI--HENNPVFVKAASNIPGVDVILASDLSVIHLAPGGHPGRLTIY 248
BLAST of FC877912 vs. ExPASy Swiss-Prot
Match: RL4_SULAC (50S ribosomal protein L4P OS=Sulfolobus acidocaldarius GN=rpl4p PE=3 SV=1) HSP 1 Score: 110.923 bits (276), Expect = 1.003e-23 Identity = 71/235 (30.21%), Postives = 116/235 (49.36%), Query Frame = 2 Query: 125 LPNVFKAPIRSDIVQHVHTGMAKNKRQPYAVAENAGHQTSAESWGTGRAVARIPRVSGGGTHRAGQAAFGNQCRSGRMFAPTKVWRKWHQKINLGQKRFATVXXXXXXXXXXXXXXRGHRVGAIPEVPLVVSSAAFADGAMKKTSQXXXXXXXXXXXXDVEKVKDSRKLRAGKGKLRNRRHVQRRGPLVVYDPSKDGKELLQAFRNIPGVECCDVYALNLLQLAPGGHLGRFVIW 829 LP F P+R D+++ V QP AG +TSA S+G +AR+PRV G +G+AA GR+ P ++ +++NL +K+ + RGHR + VP+++ F + + K + D+++VK+S+ +RAGKGK+R RR+ +GPL+V K ++++ NIPGV ++++ LAPGGH GR I+ Sbjct: 25 LPLFFSYPVRKDLIRRVFLSEFTKSLQPKGRDPLAGKRTSALSFGINLGIARVPRVKG-----SGEAALAPNTVGGRLAFPPTTEKRLVEEVNLKEKKLGIISALAATADPNFVKARGHRFTS-NNVPIILVD-DFEN--ISKAKEIMDILKSIGVVDDIKRVKESKGVRAGKGKMRGRRYQIAKGPLIVVSNHK--SPVVESASNIPGVNVVSANLVSVIHLAPGGHPGRLTIY 248
BLAST of FC877912 vs. ExPASy Swiss-Prot
Match: RL4_THEGJ (50S ribosomal protein L4P OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=rpl4p PE=3 SV=1) HSP 1 Score: 110.153 bits (274), Expect = 1.711e-23 Identity = 78/237 (32.91%), Postives = 110/237 (46.41%), Query Frame = 2 Query: 125 LPNVFKAPIRSDIVQHVHTGMAKNKRQPYAVAENAGHQTSAESWGTGRAVARIPRVSGGGTHRAGQAAFGNQCRSGRMFAPTKVWRKWHQKINLGQKRFATVXXXXXXXXXXXXXXRGHRVGAIPEVPLVVSSAAFADGAMK--KTSQXXXXXXXXXXXXDVEKVKDSRKLRAGKGKLRNRRHVQRRGPLVVYDPSKDGKELLQAFRNIPGVECCDVYALNLLQLAPGGHLGRFVIW 829 LP VF P R D+++ ++ QP AG + E+ G G +AR+ R+ AAF R GR P KV + + IN ++R A + RGH V +P PLVV D K KT+Q D+E+ K + K+RAGKGK+R RR+ + +GPL+V ++ ++Q RN PGV+ V L + LAPG H GR IW Sbjct: 18 LPKVFSTPFRPDLIRRAVIASWTHRIQPQGRDPLAGKRRVTENIGKGHGMARVERIKTPPRF----AAFVPFARGGRRTHPPKVEKIIWEDINKKERRLAIMSAIAATANPDLVRARGHVVDNVPAFPLVV-----VDDLQKVFKTAQTREIFKKLGIWDDIERAKRNTKIRAGKGKMRGRRYKKAKGPLIVVAKNEG---IVQGARNHPGVDVVTVDNLGVELLAPGTHPGRLTIW 242
BLAST of FC877912 vs. ExPASy Swiss-Prot
Match: RL4_METMA (50S ribosomal protein L4P OS=Methanosarcina mazei GN=rpl4p PE=3 SV=1) HSP 1 Score: 110.153 bits (274), Expect = 1.711e-23 Identity = 73/235 (31.06%), Postives = 113/235 (48.09%), Query Frame = 2 Query: 125 LPNVFKAPIRSDIVQHVHTGMAKNKRQPYAVAENAGHQTSAESWGTGRAVARIPRVSGGGTHRAGQAAFGNQCRSGRMFAPTKVWRKWHQKINLGQKRFATVXXXXXXXXXXXXXXRGHRVGAIPEVPLVVSSAAFADGAMKKTSQXXXXXXXXXXXXDVEKVKDSRKLRAGKGKLRNRRHVQRRGPLVVYDPSKDGKELLQAFRNIPGVECCDVYALNLLQLAPGGHLGRFVIW 829 LP VF A R D+++ N+ QPY + AG +TSA WG+GR V+ +PR+ + +AA + GR P K +K+N ++R+A RGH A E+P+V + +++T Q DV + K R +RAG+GKLR R++ ++ L+V + + +L+A RN+ GV+ V +LN LAPG H GR +W Sbjct: 19 LPAVFDADYRPDLIKKAVLAAQANRLQPYGPSLYAGMKTSATGWGSGRGVSHVPRLK-----NSSRAARVPHAKGGRRAHPPKPEADRSEKVNTKERRYAIRSAIAATIDPTLVNLRGHIFEA--ELPIVAVNDL---ENLERTKQVIEFLEAAGLYEDVLRAKYGRHIRAGRGKLRGRKYKHKKSVLIV---AGENSPILKAARNLSGVDVVTVDSLNAELLAPGTHAGRLTVW 240
BLAST of FC877912 vs. ExPASy Swiss-Prot
Match: RL4_META3 (50S ribosomal protein L4P OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=rpl4p PE=3 SV=1) HSP 1 Score: 109.768 bits (273), Expect = 2.235e-23 Identity = 75/251 (29.88%), Postives = 115/251 (45.82%), Query Frame = 2 Query: 77 VTIIGADGAASQNTHPLPNVFKAPIRSDIVQHVHTGMAKNKRQPYAVAENAGHQTSAESWGTGRAVARIPRVSGGGTHRAGQAAFGNQCRSGRMFAPTKVWRKWHQKINLGQKRFATVXXXXXXXXXXXXXXRGHRVGAIPEVPLVVSSAAFADGAMKKTSQXXXXXXXXXXXXDVEKVKDSRKLRAGKGKLRNRRHVQRRGPLVVYDPSKDGKELLQAFRNIPGVECCDVYALNLLQLAPGGHLGRFVIW 829 V + DG+ T L VF+ R D+++ + QP V AG +TSA+S G G AR+ R G QA G +C P KV + H+++N ++ A RGH V +P VPL+VS ++KKT + DV++ KD K+R+G GKLR R++ + + LVV + D ++A +N+PGV+ L ++ +APG GR +W Sbjct: 3 VKVYNMDGSEKGETE-LSAVFETEYRPDLIKRAFLSSFTARLQPKGVDLMAGKRTSAKSIGKGHGRARVQRTGQGAGAFVPQAVGGRRCH------PPKVEKILHERVNKKERLKALASAIAASANIEMVKNRGHVVETVPSVPLIVSDDF---ESLKKTKEVLETFKNLGLDGDVQRAKDGIKIRSGIGKLRGRKYRKPKSVLVVVSGACDA---VKASKNLPGVDVISANDLGVMHIAPGADSGRLTLW 240
BLAST of FC877912 vs. ExPASy Swiss-Prot
Match: RL4_PYRKO (50S ribosomal protein L4P OS=Pyrococcus kodakaraensis GN=rpl4p PE=3 SV=1) HSP 1 Score: 109.383 bits (272), Expect = 2.919e-23 Identity = 76/237 (32.07%), Postives = 111/237 (46.84%), Query Frame = 2 Query: 125 LPNVFKAPIRSDIVQHVHTGMAKNKRQPYAVAENAGHQTSAESWGTGRAVARIPRVSGGGTHRAGQAAFGNQCRSGRMFAPTKVWRKWHQKINLGQKRFATVXXXXXXXXXXXXXXRGHRVGAIPEVPLVVSSAAFADGAMK--KTSQXXXXXXXXXXXXDVEKVKDSRKLRAGKGKLRNRRHVQRRGPLVVYDPSKDGKELLQAFRNIPGVECCDVYALNLLQLAPGGHLGRFVIW 829 LP VF P R D+++ ++ QP AG + E+ G G +AR+ R+ AAF GR P KV + + IN ++R A + RGH V + ++PLVV+ D K KT+Q D+E+ K + K+RAGKGK+R RR+ + +GPL+V ++ ++Q RN PGV+ V L + LAPG H GR IW Sbjct: 18 LPKVFSTPFRPDLIRRAVIASWTHRIQPQGRDPQAGKRRVTENIGKGHGMARVERIKTSPRF----AAFVPFAVGGRRTHPPKVEKIIWEDINKKERRLAIMSAIAATANYDLVRARGHVVDNVVQIPLVVT-----DDLQKVFKTAQTREIFKKLGVWDDIERAKKNTKIRAGKGKMRGRRYKKAKGPLIVVAKNEG---IVQGARNHPGVDVVTVDNLGVEYLAPGTHPGRLTIW 242
BLAST of FC877912 vs. ExPASy Swiss-Prot
Match: RL4_METAC (50S ribosomal protein L4P OS=Methanosarcina acetivorans GN=rpl4p PE=3 SV=1) HSP 1 Score: 108.997 bits (271), Expect = 3.812e-23 Identity = 72/235 (30.64%), Postives = 113/235 (48.09%), Query Frame = 2 Query: 125 LPNVFKAPIRSDIVQHVHTGMAKNKRQPYAVAENAGHQTSAESWGTGRAVARIPRVSGGGTHRAGQAAFGNQCRSGRMFAPTKVWRKWHQKINLGQKRFATVXXXXXXXXXXXXXXRGHRVGAIPEVPLVVSSAAFADGAMKKTSQXXXXXXXXXXXXDVEKVKDSRKLRAGKGKLRNRRHVQRRGPLVVYDPSKDGKELLQAFRNIPGVECCDVYALNLLQLAPGGHLGRFVIW 829 LP VF A R D+++ N+ QPY +G +TSA WG+GR V+ +PR+ + +AA + GR P K +K+N ++R+A RGH A E+P+V + ++++T Q DV + K R +RAG+GKLR R++ ++ L+V + + +L+A RN+ GV+ V +LN LAPG H GR +W Sbjct: 19 LPAVFDADYRPDLIKKAVLAAQANRLQPYGPRLYSGMETSARGWGSGRGVSHVPRLV-----NSSRAARVPHAKGGRRAHPPKPEADRSEKVNTKERRYAIRSAIAATTDPTLVSLRGHIFEA--ELPIVAVNDL---ESLERTKQVIEFLEAAGLYEDVLRAKYGRHIRAGRGKLRGRKYKHKKSVLIV---AGENTPILKAARNLSGVDVVTVDSLNAELLAPGTHAGRLTVW 240 The following BLAST results are available for this feature:
BLAST of FC877912 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 69
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Sequences
The
following sequences are available for this feature:
EST sequence >FC877912 ID=FC877912; Name=FC877912; organism=Citrus clementina; type=EST; length=898bpback to top |