FC877912

Overview
NameFC877912
Unique NameFC877912
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length898
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC877912 vs. ExPASy Swiss-Prot
Match: RL4_HALSA (50S ribosomal protein L4P OS=Halobacterium salinarium GN=rpl4p PE=1 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 3.945e-20
Identity = 77/251 (30.68%), Postives = 111/251 (44.22%), Query Frame = 2
Query:   77 VTIIGADGAASQNTHPLPNVFKAPIRSDIVQHVHTGMAKNKRQPYAVAENAGHQTSAESWGTGRAVARIPRVSGGGTHRAGQAAFGNQCRSGRMFAPTKVWRKWHQKINLGQKRFATVXXXXXXXXXXXXXXRGHRVGAIPEVPLVVSSAAFADGAMKKTSQXXXXXXXXXXXXDVEKVKDSRKLRAGKGKLRNRRHVQRRGPLVVYDPSKDGKELLQAFRNIPGVECCDVYALNLLQLAPGGHLGRFVIW 829
            VT+   DG  +  T  LP VF+ P+R D+V+        N+ Q Y   E AG +T+AES G+GR +A +P+ +       GQ A   Q   GR   P K  +     +N  +++ A                RGH      E PLVVS   F D  + KT              D+E+  + R +RAG+G LR R++ Q    ++    S+ G     A RN+ GV+      +N   LAPG   GR  +W
Sbjct:    3 VTVRDLDGDDA-GTLDLPRVFEEPVRPDLVKRAVLAAQANRTQEYGADEYAGLRTTAESQGSGRGMAHVPKAN-------GQGARVPQTVGGRKAHPPKAEKDHGLDVNDKERKAAVRAAVAATTDSELVADRGHNFDDDVEFPLVVSD-DFED--LVKTQDVVSLLEALGVHADIERADEGRTVRAGQGTLRGRKY-QEPTSILFVTASESGPS--TAARNLAGVDVATGREVNAEDLAPGAEPGRLTVW 239          
BLAST of FC877912 vs. ExPASy Swiss-Prot
Match: RL4_HALS3 (50S ribosomal protein L4P OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=rpl4p PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 3.945e-20
Identity = 77/251 (30.68%), Postives = 111/251 (44.22%), Query Frame = 2
Query:   77 VTIIGADGAASQNTHPLPNVFKAPIRSDIVQHVHTGMAKNKRQPYAVAENAGHQTSAESWGTGRAVARIPRVSGGGTHRAGQAAFGNQCRSGRMFAPTKVWRKWHQKINLGQKRFATVXXXXXXXXXXXXXXRGHRVGAIPEVPLVVSSAAFADGAMKKTSQXXXXXXXXXXXXDVEKVKDSRKLRAGKGKLRNRRHVQRRGPLVVYDPSKDGKELLQAFRNIPGVECCDVYALNLLQLAPGGHLGRFVIW 829
            VT+   DG  +  T  LP VF+ P+R D+V+        N+ Q Y   E AG +T+AES G+GR +A +P+ +       GQ A   Q   GR   P K  +     +N  +++ A                RGH      E PLVVS   F D  + KT              D+E+  + R +RAG+G LR R++ Q    ++    S+ G     A RN+ GV+      +N   LAPG   GR  +W
Sbjct:    3 VTVRDLDGDDA-GTLDLPRVFEEPVRPDLVKRAVLAAQANRTQEYGADEYAGLRTTAESQGSGRGMAHVPKAN-------GQGARVPQTVGGRKAHPPKAEKDHGLDVNDKERKAAVRAAVAATTDSELVADRGHNFDDDVEFPLVVSD-DFED--LVKTQDVVSLLEALGVHADIERADEGRTVRAGQGTLRGRKY-QEPTSILFVTASESGPS--TAARNLAGVDVATGREVNAEDLAPGAEPGRLTVW 239          
BLAST of FC877912 vs. ExPASy Swiss-Prot
Match: RL4_THEAC (50S ribosomal protein L4P OS=Thermoplasma acidophilum GN=rpl4p PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 6.729e-20
Identity = 64/235 (27.23%), Postives = 111/235 (47.23%), Query Frame = 2
Query:  125 LPNVFKAPIRSDIVQHVHTGMAKNKRQPYAVAENAGHQTSAESWGTGRAVARIPRVSGGGTHRAGQAAFGNQCRSGRMFAPTKVWRKWHQKINLGQKRFATVXXXXXXXXXXXXXXRGHRVGAIPEVPLVVSSAAFADGAMKKTSQXXXXXXXXXXXXDVEKVKDSRKLRAGKGKLRNRRHVQRRGPLVVYDPSKDGKELLQAFRNIPGVECCDVYALNLLQLAPGGHLGRFVIW 829
            LP VF   +R DI++     ++ + RQPY  +  AG +    +   G  ++R+PR++GG       +A G     G+     +  +  + KIN  +++ A                RGHR     ++P+VV         + KT              D+E+ ++ + +RAG+GK+R RR+ Q +  L+V   S      ++AFR++PGV+     +L++ +LAPGG  GR  I+
Sbjct:   20 LPEVFDTEVREDIIRRAFRAISLSMRQPYGSSPLAGMRRVGHTTRPGLGISRMPRIAGGSRVVGIASAVG-----GKSAHSPRTTKNLYVKINDRERKMAKYSAIALTASVEAVKKRGHRFKEGLKLPIVVEDGV---EGINKTKDAIALLKNLGVYEDIERSREGKHIRAGRGKMRGRRYKQPKSVLIVARNS----SAMKAFRSLPGVDIASPNSLSIRKLAPGGVGGRLTIF 242          
BLAST of FC877912 vs. ExPASy Swiss-Prot
Match: RL4_NANEQ (50S ribosomal protein L4P OS=Nanoarchaeum equitans GN=rpl4p PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 8.788e-20
Identity = 75/247 (30.36%), Postives = 116/247 (46.96%), Query Frame = 2
Query:  125 LPNVFKAPIRSDIVQHVHTGMAKNKRQPYAVAENAGHQTSA------ESWGT--GRAVARIPRVSGGGTHRAGQAAFG-----NQCRSGRMFAPTKVWRKWHQKINLGQKRFATVXXXXXXXXXXXXXXRGHRVGAIPEVPLVVSSAAFADGAMKKTSQXXXXXXXXXXXXDVEKVKDSRKLRAGKGKLRNRRHVQRRGPLVVYDPSKDGKELLQAFRNIPGVECCDVYALNLLQLAPGGHLGRFVI 826
            LP  F   IR D+++     +  +KRQPY  +  AG Q SA       SW T  GR ++R+ R       R G   +       Q   G+   P K  + W++KIN  ++R A                RGH +     VP+VV         ++KT +            ++E+V + ++ RAGKGK R R +++R+GPL+V +   +  +L +A  NIPG++  +V  LN+  LAPG   GR +I
Sbjct:   18 LPPQFNEKIRFDVIKRAFLAIQSHKRQPYGASPIAGKQHSAWTSKRRRSWRTSYGRGISRVSRAI---LRRHGALFYWVARNIAQAVKGKKAHPPKAEKDWYEKINKKERRLAIRSALAATKELDLVKARGHIIDK--PVPIVVDGLE----QLRKTKEIQQLLLKLGLEKELERVYEIKR-RAGKGKRRGRAYIERKGPLIVVNDYNE--QLFKAVDNIPGLDIEEVPNLNVELLAPGAKPGRLLI 252          
BLAST of FC877912 vs. ExPASy Swiss-Prot
Match: RL4_HALWD (50S ribosomal protein L4P OS=Haloquadratum walsbyi (strain DSM 16790) GN=rpl4p PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 3.339e-19
Identity = 69/241 (28.63%), Postives = 112/241 (46.47%), Query Frame = 2
Query:  113 NTHPLPNVFKAPIRSDIVQHVHTGMAKNKRQPYAVAENAGHQTSAESWGTGRAVARIPRVSGGGTHRAGQAAFGNQCRSGRMFAPTKVWRKWHQKINLGQKRFATVXXXXXXXXXXXXXXRGHRVGAIPEVPLVVSSAAFADGAMKKTSQXXXXXXXXXXXXDVEKVKDSRKLRAGKGKLRNRRHVQRRGPLVVY--DPSKDGKELLQAFRNIPGVECCDVYALNLLQLAPGGHLGRFVIW 829
            +T  LP VF+ P R D+++        N++QPY     AG +T AES+G+GR +A +PR +       GQA    Q  SGR   P K  +   + +N  +++ A                RGH+     E+PLVVS   F +  + KT +            D+ +  +++ +RAG+GK R R++ + +  L +   +PSK       A RN+ G +      ++   LAPG   GR  ++
Sbjct:   14 DTLELPAVFETPYRPDVIERAVVAAQANRKQPYGADPYAGMRTPAESFGSGRGMAHVPREN-------GQARRVPQAVSGRKAHPPKAEKDQSKSVNTKERKLAFQSAVAATADPSQVEERGHQFENDVELPLVVSD-EFEE--LIKTQEVVDVLESLGVHADIVRSDENKSIRAGRGKTRGRKYRRPKSILFITSDEPSK-------AARNLAGADVVTAANVSAEDLAPGTQPGRLTVY 237          
BLAST of FC877912 vs. ExPASy Swiss-Prot
Match: RL4_THEVO (50S ribosomal protein L4P OS=Thermoplasma volcanium GN=rpl4p PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 5.696e-19
Identity = 62/235 (26.38%), Postives = 111/235 (47.23%), Query Frame = 2
Query:  125 LPNVFKAPIRSDIVQHVHTGMAKNKRQPYAVAENAGHQTSAESWGTGRAVARIPRVSGGGTHRAGQAAFGNQCRSGRMFAPTKVWRKWHQKINLGQKRFATVXXXXXXXXXXXXXXRGHRVGAIPEVPLVVSSAAFADGAMKKTSQXXXXXXXXXXXXDVEKVKDSRKLRAGKGKLRNRRHVQRRGPLVVYDPSKDGKELLQAFRNIPGVECCDVYALNLLQLAPGGHLGRFVIW 829
            LP +F   +R D+++     ++ + RQPY  +  AG +    +   G  ++R+PR++GG       +A G     G+     +  +K +  IN  +++ A                RGHR      +P+VV  A      +KKT              D+ + K+ + +RAG+GK+RNRR+   +  L+V   S      L+ F+++PGV+   + +L++ +LAPGG  GR  ++
Sbjct:   20 LPEIFNYSVREDLIRKAFRAISLSLRQPYGSSPLAGLRRVGHTTKPGLGISRMPRIAGGSRVVGIASAVG-----GKSAHSPRSTKKLYVGINEKERKMAKFSAIAMTASADAVRKRGHRFSESLPLPVVVEDAV---SGIKKTKDAVNLLKSIGLYEDILRSKEGKHIRAGRGKMRNRRYKVPKSLLIVGTDSVS----LKVFKSLPGVDVASMDSLSIRKLAPGGVGGRLTVY 242          
BLAST of FC877912 vs. ExPASy Swiss-Prot
Match: RL4_NATPD (50S ribosomal protein L4P OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=rpl4p PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 5.696e-19
Identity = 72/235 (30.64%), Postives = 108/235 (45.96%), Query Frame = 2
Query:  125 LPNVFKAPIRSDIVQHVHTGMAKNKRQPYAVAENAGHQTSAESWGTGRAVARIPRVSGGGTHRAGQAAFGNQCRSGRMFAPTKVWRKWHQKINLGQKRFATVXXXXXXXXXXXXXXRGHRVGAIPEVPLVVSSAAFADGAMKKTSQXXXXXXXXXXXXDVEKVKDSRKLRAGKGKLRNRRHVQRRGPLVVYDPSKDGKELLQAFRNIPGVECCDVYALNLLQLAPGGHLGRFVIW 829
            LP VF+   R D+++        N+ Q     E AG +T AES G+GR +A +PR +G    RA +     Q  SGR   P K  +     IN  +++ AT               RGH      ++PLVVS   F D  + KT +            D+E+ +D + +RAG+G  R R++ + +  LVV   + D + L  A RN+ G +      +N+  LAPG   GR  +W
Sbjct:   18 LPAVFETDYRPDLIKRAVLAAQANRIQDTGTDEYAGLRTPAESPGSGRGMAHVPRQNG----RAREVP---QAVSGRPAHPPKAEKDRGLDINTKERKLATRSAIAATANADRVEERGHEFDEETDLPLVVSD-EFED--LVKTQEAVDVLEALGVYDDIERAEDGKTVRAGRGTTRGRKYTEPKSVLVV---TSDDQSL--AARNLAGSDVATADEVNVEDLAPGTQAGRLTLW 237          
BLAST of FC877912 vs. ExPASy Swiss-Prot
Match: RL4_METJA (50S ribosomal protein L4P OS=Methanocaldococcus jannaschii GN=rpl4p PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 2.165e-18
Identity = 72/235 (30.64%), Postives = 107/235 (45.53%), Query Frame = 2
Query:  125 LPNVFKAPIRSDIVQHVHTGMAKNKRQPYAVAENAGHQTSAESWGTGRAVARIPRVSGGGTHRAGQAAFGNQCRSGRMFAPTKVWRKWHQKINLGQKRFATVXXXXXXXXXXXXXXRGHRVGAIPEVPLVVSSAAFADGAMKKTSQXXXXXXXXXXXXDVEKVKDSRKLRAGKGKLRNRRHVQRRGPLVVYDPSKDGKELLQAFRNIPGVECCDVYALNLLQLAPGGHLGRFVIW 829
            LP VF+   R D+++         + QP      AG +TSA++ G G   AR+ RV  G   R  QA        GR   P KV +   +++N  ++  A                RGH V     +P++V S +F +  ++KT              DV + K+  K+RAGKGK+R R++ + R  LVV     D    + A RN+PGV+      L ++ LAPGG  GR  +W
Sbjct:   18 LPAVFEEEYRPDLIKRAFLSAFTARLQPKGSDPLAGLRTSAKNIGKGHGRARVDRVPQGWAARVPQAV------GGRRAHPPKVEKILWERVNKKERIKAIKSAIAATANPELVKERGH-VFETENLPIIVES-SFEE--LQKTKDVFAVFEKLGISDDVIRAKNGIKIRAGKGKMRGRKYKKPRSILVVVG---DKCNAILASRNLPGVDVITAKDLGIIHLAPGGVAGRLTVW 239          
BLAST of FC877912 vs. ExPASy Swiss-Prot
Match: RL4_HALMA (50S ribosomal protein L4P OS=Haloarcula marismortui GN=rpl4p PE=1 SV=4)

HSP 1 Score: 85.8853 bits (211), Expect = 3.456e-16
Identity = 74/250 (29.60%), Postives = 110/250 (44.00%), Query Frame = 2
Query:   80 TIIGADGAASQNTHPLPNVFKAPIRSDIVQHVHTGMAKNKRQPYAVAENAGHQTSAESWGTGRAVARIPRVSGGGTHRAGQAAFGNQCRSGRMFAPTKVWRKWHQKINLGQKRFATVXXXXXXXXXXXXXXRGHRVGAIPEVPLVVSSAAFADGAMKKTSQXXXXXXXXXXXXDVEKVKDSRKLRAGKGKLRNRRHVQRRGPLVVYDPSKDGKELLQAFRNIPGVECCDVYALNLLQLAPGGHLGRFVIW 829
            TI   DG        LP+VF+ P+RSD++         N++Q Y   E AG +T AES+G+GR  A +P+   G   R  QA        GR   P K  +     +N  +++ A                RGH      EVP+VVS   F D  + KT +            D+++  D  K++AG+G  R R++  RR   +++  S    E   A RN+ G +      +N   LAPGG  GR  ++
Sbjct:    4 TIYDLDGNTDGEVD-LPDVFETPVRSDLIGKAVRAAQANRKQDYGSDEYAGLRTPAESFGSGRGQAHVPK-QDGRARRVPQAV------KGRSAHPPKTEKDRSLDLNDKERQLAVRSALAATADADLVADRGHEFDR-DEVPVVVSD-DFED--LVKTQEVVSLLEALDVHADIDRA-DETKIKAGQGSARGRKY--RRPASILFVTS---DEPSTAARNLAGADVATASEVNTEDLAPGGAPGRLTVF 235          
The following BLAST results are available for this feature:
BLAST of FC877912 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 69
Match NameE-valueIdentityDescription
RL4_HALSA3.945e-2030.6850S ribosomal protein L4P OS=Halobacterium salinar... [more]
RL4_HALS33.945e-2030.6850S ribosomal protein L4P OS=Halobacterium salinar... [more]
RL4_THEAC6.729e-2027.2350S ribosomal protein L4P OS=Thermoplasma acidophi... [more]
RL4_NANEQ8.788e-2030.3650S ribosomal protein L4P OS=Nanoarchaeum equitans... [more]
RL4_HALWD3.339e-1928.6350S ribosomal protein L4P OS=Haloquadratum walsbyi... [more]
RL4_THEVO5.696e-1926.3850S ribosomal protein L4P OS=Thermoplasma volcaniu... [more]
RL4_NATPD5.696e-1930.6450S ribosomal protein L4P OS=Natronomonas pharaoni... [more]
RL4_METJA2.165e-1830.6450S ribosomal protein L4P OS=Methanocaldococcus ja... [more]
RL4_HALMA3.456e-1629.6050S ribosomal protein L4P OS=Haloarcula marismortu... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA15CA11RM1 IVIA1 Citrus clementina cDNA clone IC0AAA15CA11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877912 ID=FC877912; Name=FC877912; organism=Citrus clementina; type=EST; length=898bp
CCGCGACGAGTCGACGATTGCTGGCATCCGCACCGCACCTACTAACCACA
CAGTTGTCAAGATGTCGCGTCCGACTGTCACGATCATTGGCGCCGATGGG
GCTGCCAGCCAGAACACCCACCCCCTGCCCAATGTCTTCAAGGCGCCCAT
CCGCTCGGACATTGTCCAGCACGTCCACACCGGCATGGCCAAGAACAAGC
GCCAGCCGTACGCCGTAGCTGAGAATGCTGGTCACCAGACCTCCGCCGAG
TCCTGGGGTACCGGTCGCGCTGTCGCCCGTATTCCTCGTGTCTCTGGTGG
TGGTACTCACCGTGCCGGTCAGGCCGCCTTCGGTAACCAGTGCCGTTCCG
GTCGCATGTTCGCACCCACCAAGGTCTGGCGCAAGTGGCACCAGAAGATC
AACCTTGGCCAGAAGCGTTTCGCCACCGTTTCCGCCATTGCTGCTTCTTC
CAGCGCTGCCCTTCTCCTCGCCCGTGGCCACCGTGTCGGTGCCATCCCTG
AGGTCCCTCTCGTCGTCTCCAGCGCCGCCTTCGCCGACGGTGCCATGAAG
AAGACCTCCCAGGCCGTCAACCTCCTCGCCGCCGTCGGTGCCGCCGCCGA
TGTCGAGAAGGTCAAGGACTCCCGCAAGCTTCGCGCCGGTAAGGGTAAGC
TGAGGAACCGTCGCCACGTCCAGCGTCGCGGCCCCCTGGTCGTCTACGAT
CCGTCCAAGGATGGCAAGGAGCTTCTCCAGGCCTTCCGCAACATCCCCGG
TGTCGAGTGCTGCGACGTCTACGCCCTCAACCTCCTCCAGCTCGCCCCTG
GTGGCCACCTTGGCCGTTTCGTCATCTGGTCGTCAACGCCTTCGCCGCCC
TCGACTCCGTCTACGGCAGCACCACCGAGCCCTCCGAGCTCAAGCGCG
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