FC877912
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC877912 vs. ExPASy Swiss-Prot
Match: RL4_HALSA (50S ribosomal protein L4P OS=Halobacterium salinarium GN=rpl4p PE=1 SV=1) HSP 1 Score: 98.9821 bits (245), Expect = 3.945e-20 Identity = 77/251 (30.68%), Postives = 111/251 (44.22%), Query Frame = 2 Query: 77 VTIIGADGAASQNTHPLPNVFKAPIRSDIVQHVHTGMAKNKRQPYAVAENAGHQTSAESWGTGRAVARIPRVSGGGTHRAGQAAFGNQCRSGRMFAPTKVWRKWHQKINLGQKRFATVXXXXXXXXXXXXXXRGHRVGAIPEVPLVVSSAAFADGAMKKTSQXXXXXXXXXXXXDVEKVKDSRKLRAGKGKLRNRRHVQRRGPLVVYDPSKDGKELLQAFRNIPGVECCDVYALNLLQLAPGGHLGRFVIW 829 VT+ DG + T LP VF+ P+R D+V+ N+ Q Y E AG +T+AES G+GR +A +P+ + GQ A Q GR P K + +N +++ A RGH E PLVVS F D + KT D+E+ + R +RAG+G LR R++ Q ++ S+ G A RN+ GV+ +N LAPG GR +W Sbjct: 3 VTVRDLDGDDA-GTLDLPRVFEEPVRPDLVKRAVLAAQANRTQEYGADEYAGLRTTAESQGSGRGMAHVPKAN-------GQGARVPQTVGGRKAHPPKAEKDHGLDVNDKERKAAVRAAVAATTDSELVADRGHNFDDDVEFPLVVSD-DFED--LVKTQDVVSLLEALGVHADIERADEGRTVRAGQGTLRGRKY-QEPTSILFVTASESGPS--TAARNLAGVDVATGREVNAEDLAPGAEPGRLTVW 239
BLAST of FC877912 vs. ExPASy Swiss-Prot
Match: RL4_HALS3 (50S ribosomal protein L4P OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=rpl4p PE=3 SV=1) HSP 1 Score: 98.9821 bits (245), Expect = 3.945e-20 Identity = 77/251 (30.68%), Postives = 111/251 (44.22%), Query Frame = 2 Query: 77 VTIIGADGAASQNTHPLPNVFKAPIRSDIVQHVHTGMAKNKRQPYAVAENAGHQTSAESWGTGRAVARIPRVSGGGTHRAGQAAFGNQCRSGRMFAPTKVWRKWHQKINLGQKRFATVXXXXXXXXXXXXXXRGHRVGAIPEVPLVVSSAAFADGAMKKTSQXXXXXXXXXXXXDVEKVKDSRKLRAGKGKLRNRRHVQRRGPLVVYDPSKDGKELLQAFRNIPGVECCDVYALNLLQLAPGGHLGRFVIW 829 VT+ DG + T LP VF+ P+R D+V+ N+ Q Y E AG +T+AES G+GR +A +P+ + GQ A Q GR P K + +N +++ A RGH E PLVVS F D + KT D+E+ + R +RAG+G LR R++ Q ++ S+ G A RN+ GV+ +N LAPG GR +W Sbjct: 3 VTVRDLDGDDA-GTLDLPRVFEEPVRPDLVKRAVLAAQANRTQEYGADEYAGLRTTAESQGSGRGMAHVPKAN-------GQGARVPQTVGGRKAHPPKAEKDHGLDVNDKERKAAVRAAVAATTDSELVADRGHNFDDDVEFPLVVSD-DFED--LVKTQDVVSLLEALGVHADIERADEGRTVRAGQGTLRGRKY-QEPTSILFVTASESGPS--TAARNLAGVDVATGREVNAEDLAPGAEPGRLTVW 239
BLAST of FC877912 vs. ExPASy Swiss-Prot
Match: RL4_THEAC (50S ribosomal protein L4P OS=Thermoplasma acidophilum GN=rpl4p PE=3 SV=1) HSP 1 Score: 98.2117 bits (243), Expect = 6.729e-20 Identity = 64/235 (27.23%), Postives = 111/235 (47.23%), Query Frame = 2 Query: 125 LPNVFKAPIRSDIVQHVHTGMAKNKRQPYAVAENAGHQTSAESWGTGRAVARIPRVSGGGTHRAGQAAFGNQCRSGRMFAPTKVWRKWHQKINLGQKRFATVXXXXXXXXXXXXXXRGHRVGAIPEVPLVVSSAAFADGAMKKTSQXXXXXXXXXXXXDVEKVKDSRKLRAGKGKLRNRRHVQRRGPLVVYDPSKDGKELLQAFRNIPGVECCDVYALNLLQLAPGGHLGRFVIW 829 LP VF +R DI++ ++ + RQPY + AG + + G ++R+PR++GG +A G G+ + + + KIN +++ A RGHR ++P+VV + KT D+E+ ++ + +RAG+GK+R RR+ Q + L+V S ++AFR++PGV+ +L++ +LAPGG GR I+ Sbjct: 20 LPEVFDTEVREDIIRRAFRAISLSMRQPYGSSPLAGMRRVGHTTRPGLGISRMPRIAGGSRVVGIASAVG-----GKSAHSPRTTKNLYVKINDRERKMAKYSAIALTASVEAVKKRGHRFKEGLKLPIVVEDGV---EGINKTKDAIALLKNLGVYEDIERSREGKHIRAGRGKMRGRRYKQPKSVLIVARNS----SAMKAFRSLPGVDIASPNSLSIRKLAPGGVGGRLTIF 242
BLAST of FC877912 vs. ExPASy Swiss-Prot
Match: RL4_NANEQ (50S ribosomal protein L4P OS=Nanoarchaeum equitans GN=rpl4p PE=3 SV=1) HSP 1 Score: 97.8265 bits (242), Expect = 8.788e-20 Identity = 75/247 (30.36%), Postives = 116/247 (46.96%), Query Frame = 2 Query: 125 LPNVFKAPIRSDIVQHVHTGMAKNKRQPYAVAENAGHQTSA------ESWGT--GRAVARIPRVSGGGTHRAGQAAFG-----NQCRSGRMFAPTKVWRKWHQKINLGQKRFATVXXXXXXXXXXXXXXRGHRVGAIPEVPLVVSSAAFADGAMKKTSQXXXXXXXXXXXXDVEKVKDSRKLRAGKGKLRNRRHVQRRGPLVVYDPSKDGKELLQAFRNIPGVECCDVYALNLLQLAPGGHLGRFVI 826 LP F IR D+++ + +KRQPY + AG Q SA SW T GR ++R+ R R G + Q G+ P K + W++KIN ++R A RGH + VP+VV ++KT + ++E+V + ++ RAGKGK R R +++R+GPL+V + + +L +A NIPG++ +V LN+ LAPG GR +I Sbjct: 18 LPPQFNEKIRFDVIKRAFLAIQSHKRQPYGASPIAGKQHSAWTSKRRRSWRTSYGRGISRVSRAI---LRRHGALFYWVARNIAQAVKGKKAHPPKAEKDWYEKINKKERRLAIRSALAATKELDLVKARGHIIDK--PVPIVVDGLE----QLRKTKEIQQLLLKLGLEKELERVYEIKR-RAGKGKRRGRAYIERKGPLIVVNDYNE--QLFKAVDNIPGLDIEEVPNLNVELLAPGAKPGRLLI 252
BLAST of FC877912 vs. ExPASy Swiss-Prot
Match: RL4_HALWD (50S ribosomal protein L4P OS=Haloquadratum walsbyi (strain DSM 16790) GN=rpl4p PE=3 SV=1) HSP 1 Score: 95.9005 bits (237), Expect = 3.339e-19 Identity = 69/241 (28.63%), Postives = 112/241 (46.47%), Query Frame = 2 Query: 113 NTHPLPNVFKAPIRSDIVQHVHTGMAKNKRQPYAVAENAGHQTSAESWGTGRAVARIPRVSGGGTHRAGQAAFGNQCRSGRMFAPTKVWRKWHQKINLGQKRFATVXXXXXXXXXXXXXXRGHRVGAIPEVPLVVSSAAFADGAMKKTSQXXXXXXXXXXXXDVEKVKDSRKLRAGKGKLRNRRHVQRRGPLVVY--DPSKDGKELLQAFRNIPGVECCDVYALNLLQLAPGGHLGRFVIW 829 +T LP VF+ P R D+++ N++QPY AG +T AES+G+GR +A +PR + GQA Q SGR P K + + +N +++ A RGH+ E+PLVVS F + + KT + D+ + +++ +RAG+GK R R++ + + L + +PSK A RN+ G + ++ LAPG GR ++ Sbjct: 14 DTLELPAVFETPYRPDVIERAVVAAQANRKQPYGADPYAGMRTPAESFGSGRGMAHVPREN-------GQARRVPQAVSGRKAHPPKAEKDQSKSVNTKERKLAFQSAVAATADPSQVEERGHQFENDVELPLVVSD-EFEE--LIKTQEVVDVLESLGVHADIVRSDENKSIRAGRGKTRGRKYRRPKSILFITSDEPSK-------AARNLAGADVVTAANVSAEDLAPGTQPGRLTVY 237
BLAST of FC877912 vs. ExPASy Swiss-Prot
Match: RL4_THEVO (50S ribosomal protein L4P OS=Thermoplasma volcanium GN=rpl4p PE=3 SV=1) HSP 1 Score: 95.1301 bits (235), Expect = 5.696e-19 Identity = 62/235 (26.38%), Postives = 111/235 (47.23%), Query Frame = 2 Query: 125 LPNVFKAPIRSDIVQHVHTGMAKNKRQPYAVAENAGHQTSAESWGTGRAVARIPRVSGGGTHRAGQAAFGNQCRSGRMFAPTKVWRKWHQKINLGQKRFATVXXXXXXXXXXXXXXRGHRVGAIPEVPLVVSSAAFADGAMKKTSQXXXXXXXXXXXXDVEKVKDSRKLRAGKGKLRNRRHVQRRGPLVVYDPSKDGKELLQAFRNIPGVECCDVYALNLLQLAPGGHLGRFVIW 829 LP +F +R D+++ ++ + RQPY + AG + + G ++R+PR++GG +A G G+ + +K + IN +++ A RGHR +P+VV A +KKT D+ + K+ + +RAG+GK+RNRR+ + L+V S L+ F+++PGV+ + +L++ +LAPGG GR ++ Sbjct: 20 LPEIFNYSVREDLIRKAFRAISLSLRQPYGSSPLAGLRRVGHTTKPGLGISRMPRIAGGSRVVGIASAVG-----GKSAHSPRSTKKLYVGINEKERKMAKFSAIAMTASADAVRKRGHRFSESLPLPVVVEDAV---SGIKKTKDAVNLLKSIGLYEDILRSKEGKHIRAGRGKMRNRRYKVPKSLLIVGTDSVS----LKVFKSLPGVDVASMDSLSIRKLAPGGVGGRLTVY 242
BLAST of FC877912 vs. ExPASy Swiss-Prot
Match: RL4_NATPD (50S ribosomal protein L4P OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=rpl4p PE=3 SV=1) HSP 1 Score: 95.1301 bits (235), Expect = 5.696e-19 Identity = 72/235 (30.64%), Postives = 108/235 (45.96%), Query Frame = 2 Query: 125 LPNVFKAPIRSDIVQHVHTGMAKNKRQPYAVAENAGHQTSAESWGTGRAVARIPRVSGGGTHRAGQAAFGNQCRSGRMFAPTKVWRKWHQKINLGQKRFATVXXXXXXXXXXXXXXRGHRVGAIPEVPLVVSSAAFADGAMKKTSQXXXXXXXXXXXXDVEKVKDSRKLRAGKGKLRNRRHVQRRGPLVVYDPSKDGKELLQAFRNIPGVECCDVYALNLLQLAPGGHLGRFVIW 829 LP VF+ R D+++ N+ Q E AG +T AES G+GR +A +PR +G RA + Q SGR P K + IN +++ AT RGH ++PLVVS F D + KT + D+E+ +D + +RAG+G R R++ + + LVV + D + L A RN+ G + +N+ LAPG GR +W Sbjct: 18 LPAVFETDYRPDLIKRAVLAAQANRIQDTGTDEYAGLRTPAESPGSGRGMAHVPRQNG----RAREVP---QAVSGRPAHPPKAEKDRGLDINTKERKLATRSAIAATANADRVEERGHEFDEETDLPLVVSD-EFED--LVKTQEAVDVLEALGVYDDIERAEDGKTVRAGRGTTRGRKYTEPKSVLVV---TSDDQSL--AARNLAGSDVATADEVNVEDLAPGTQAGRLTLW 237
BLAST of FC877912 vs. ExPASy Swiss-Prot
Match: RL4_METJA (50S ribosomal protein L4P OS=Methanocaldococcus jannaschii GN=rpl4p PE=3 SV=1) HSP 1 Score: 93.2041 bits (230), Expect = 2.165e-18 Identity = 72/235 (30.64%), Postives = 107/235 (45.53%), Query Frame = 2 Query: 125 LPNVFKAPIRSDIVQHVHTGMAKNKRQPYAVAENAGHQTSAESWGTGRAVARIPRVSGGGTHRAGQAAFGNQCRSGRMFAPTKVWRKWHQKINLGQKRFATVXXXXXXXXXXXXXXRGHRVGAIPEVPLVVSSAAFADGAMKKTSQXXXXXXXXXXXXDVEKVKDSRKLRAGKGKLRNRRHVQRRGPLVVYDPSKDGKELLQAFRNIPGVECCDVYALNLLQLAPGGHLGRFVIW 829 LP VF+ R D+++ + QP AG +TSA++ G G AR+ RV G R QA GR P KV + +++N ++ A RGH V +P++V S +F + ++KT DV + K+ K+RAGKGK+R R++ + R LVV D + A RN+PGV+ L ++ LAPGG GR +W Sbjct: 18 LPAVFEEEYRPDLIKRAFLSAFTARLQPKGSDPLAGLRTSAKNIGKGHGRARVDRVPQGWAARVPQAV------GGRRAHPPKVEKILWERVNKKERIKAIKSAIAATANPELVKERGH-VFETENLPIIVES-SFEE--LQKTKDVFAVFEKLGISDDVIRAKNGIKIRAGKGKMRGRKYKKPRSILVVVG---DKCNAILASRNLPGVDVITAKDLGIIHLAPGGVAGRLTVW 239
BLAST of FC877912 vs. ExPASy Swiss-Prot
Match: RL4_HALMA (50S ribosomal protein L4P OS=Haloarcula marismortui GN=rpl4p PE=1 SV=4) HSP 1 Score: 85.8853 bits (211), Expect = 3.456e-16 Identity = 74/250 (29.60%), Postives = 110/250 (44.00%), Query Frame = 2 Query: 80 TIIGADGAASQNTHPLPNVFKAPIRSDIVQHVHTGMAKNKRQPYAVAENAGHQTSAESWGTGRAVARIPRVSGGGTHRAGQAAFGNQCRSGRMFAPTKVWRKWHQKINLGQKRFATVXXXXXXXXXXXXXXRGHRVGAIPEVPLVVSSAAFADGAMKKTSQXXXXXXXXXXXXDVEKVKDSRKLRAGKGKLRNRRHVQRRGPLVVYDPSKDGKELLQAFRNIPGVECCDVYALNLLQLAPGGHLGRFVIW 829 TI DG LP+VF+ P+RSD++ N++Q Y E AG +T AES+G+GR A +P+ G R QA GR P K + +N +++ A RGH EVP+VVS F D + KT + D+++ D K++AG+G R R++ RR +++ S E A RN+ G + +N LAPGG GR ++ Sbjct: 4 TIYDLDGNTDGEVD-LPDVFETPVRSDLIGKAVRAAQANRKQDYGSDEYAGLRTPAESFGSGRGQAHVPK-QDGRARRVPQAV------KGRSAHPPKTEKDRSLDLNDKERQLAVRSALAATADADLVADRGHEFDR-DEVPVVVSD-DFED--LVKTQEVVSLLEALDVHADIDRA-DETKIKAGQGSARGRKY--RRPASILFVTS---DEPSTAARNLAGADVATASEVNTEDLAPGGAPGRLTVF 235 The following BLAST results are available for this feature:
BLAST of FC877912 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 69
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Sequences
The
following sequences are available for this feature:
EST sequence >FC877912 ID=FC877912; Name=FC877912; organism=Citrus clementina; type=EST; length=898bpback to top |