FC877918

Overview
NameFC877918
Unique NameFC877918
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length870
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC877918 vs. ExPASy Swiss-Prot
Match: RDGC_DROME (Serine/threonine-protein phosphatase rdgC OS=Drosophila melanogaster GN=rdgC PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 6.182e-23
Identity = 72/224 (32.14%), Postives = 115/224 (51.34%), Query Frame = 1
Query:  244 VKILCEQARAILVEEWNVQPVKCPV----TVCGDIHGQFHDLVELFRIGGNAPDTN-YLFMGDYVDRGYYSVETVTLLVALKVRYRDRITILRGNHESRQITQVYGFYDECLRKY--GNANVWKHFTDLFDYLPLTALIESQVFCLHGGLSPSLDTLDNIRALDRIQEVPHEGP---------------MCDLLWSDPDDRCGWGISP-RGAGYTFGQDIASQF 846
            V ++  +A   L +  N+ PV   V    TVCGD+HG+  DL+ +    G    +N Y+F GD+VDRG   +E + LL++L + + + + + RGNHE   +   YGF  E   KY   +  +     +++ +LPL +++ S+V  +HGG S S  +LD I+++DR + V    P               + D++WSDP    G   +  RGAG  FG D+   F
Sbjct:  125 VALILREAAKSLKQLPNISPVSTAVSQQVTVCGDLHGKLDDLLVVLHKNGLPSSSNPYVFNGDFVDRGKRGLEVLLLLLSLYLAFPNAVFLNRGNHEDSVMNARYGFIREVESKYPRNHKRILAFIDEVYRWLPLGSVLNSRVLIVHGGFSDS-TSLDLIKSIDRGKYVSILRPPLTDGEPLDKTEWQQIFDIMWSDPQATMGCVPNTLRGAGVWFGPDVTDNF 347          
BLAST of FC877918 vs. ExPASy Swiss-Prot
Match: PPE2_HUMAN (Serine/threonine-protein phosphatase with EF-hands 2 OS=Homo sapiens GN=PPEF2 PE=2 SV=2)

HSP 1 Score: 101.679 bits (252), Expect = 5.786e-21
Identity = 55/139 (39.57%), Postives = 80/139 (57.55%), Query Frame = 1
Query:  316 VTVCGDIHGQFHDLVELFRIGG-NAPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYRDRITILRGNHESRQITQVYGFYDECLRKY--GNANVWKHFTDLFDYLPLTALIESQVFCLHGGLSPSLDTLDNIRALDRIQ 723
            +TVCGD+HGQ  DL+ +F   G  +P+ +Y+F GD+VDRG  SVE + +L A  + Y     + RGNHE   +   YGF  E + KY      + +   D+F +LPL  LI+ +V  LHGG+S   D    +  LD+I+
Sbjct:  174 ITVCGDLHGQLDDLIFIFYKNGLPSPERSYVFNGDFVDRGKDSVEILMILFAFMLVYPKEFHLNRGNHEDHMVNLRYGFTKEVMNKYKVHGKEILRTLQDVFCWLPLATLIDEKVLILHGGVSDITD----LELLDKIE 308          
BLAST of FC877918 vs. ExPASy Swiss-Prot
Match: PPE2_MOUSE (Serine/threonine-protein phosphatase with EF-hands 2 OS=Mus musculus GN=Ppef2 PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 7.557e-21
Identity = 56/137 (40.88%), Postives = 79/137 (57.66%), Query Frame = 1
Query:  316 VTVCGDIHGQFHDLVELFRIGG-NAPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYRDRITILRGNHESRQITQVYGFYDECLRKY--GNANVWKHFTDLFDYLPLTALIESQVFCLHGGLSPSLDTLDNIRALDR 717
            VTVCGD+HGQ  DL+ +F   G  +P+  Y+F GD+VDRG  SVE + +L A  + Y     + RGNHE   +   YGF  E + KY      + +   D+F +LPL  L++ +V  LHGG+S   D L+ +  LDR
Sbjct:  174 VTVCGDLHGQLDDLIFIFYKNGLPSPERAYVFNGDFVDRGKDSVEVLMVLFAFMLVYPKEFHLNRGNHEDHLVNLRYGFTKEVMHKYKIHGKKILRTLQDVFCWLPLATLVDEKVLVLHGGVSDKTD-LELLAKLDR 309          
BLAST of FC877918 vs. ExPASy Swiss-Prot
Match: PPE1_RAT (Serine/threonine-protein phosphatase with EF-hands 1 OS=Rattus norvegicus GN=Ppef1 PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.289e-20
Identity = 76/269 (28.25%), Postives = 130/269 (48.33%), Query Frame = 1
Query:  187 DLDRQIEHLMQCKPLPEQEVKILCEQARAILVEEWNVQPVKC----PVTVCGDIHGQFHDLVELFRIGGNAPDTN-YLFMGDYVDRGYYSVETVTLLVALKVRYRDRITILRGNHESRQITQVYGFYDECLRKY--GNANVWKHFTDLFDYLPLTALIESQVFCLHGGLSPSLDTLDNIRALDRIQ-----------------EVPHEGP----------------MCDLLWSDPDDRCG-WGISPRGAGYTFGQDIASQFNHTNGLTL 870
            D++  ++   Q + L    V  +  +AR IL +  N   ++      +T+CGD+HG+  DL+ +F   G   + N Y+F GD+VDRG  S+E + +L+   + Y   + + RGNHE   +   YGF  E L+KY      + +   +L+ +LP+  +I++++  +HGG+S S D L+ ++ L R +                 +    GP                + DLLWSDP  + G +  + RG G  FG D+ S+  + N L +
Sbjct:  121 DINLLLQAFKQQQTLHAHYVLEVLFEARKILKQMPNFTRIQTFPAKEITICGDLHGKLDDLMLIFYKNGLPSEKNPYVFNGDFVDRGNNSMEILMILLVSFLVYPTDLHLNRGNHEDFMMNLRYGFTKEILQKYKLHGKKILQVLEELYTWLPIGTIIDNEILVIHGGISESTD-LNILQQLQRNKMKSVLMPPMSTNQECNIKKNKAGPSEQSASEQLTKLEWEQIIDLLWSDPRGKKGCYPNTSRGGGCYFGPDVTSKVLNKNQLKM 388          
BLAST of FC877918 vs. ExPASy Swiss-Prot
Match: PPE1_MOUSE (Serine/threonine-protein phosphatase with EF-hands 1 OS=Mus musculus GN=Ppef1 PE=2 SV=2)

HSP 1 Score: 97.8265 bits (242), Expect = 8.356e-20
Identity = 71/253 (28.06%), Postives = 118/253 (46.64%), Query Frame = 1
Query:  262 QARAILVEEWNVQPVKC----PVTVCGDIHGQFHDLVELFRIGGNAPDTN-YLFMGDYVDRGYYSVETVTLLVALKVRYRDRITILRGNHESRQITQVYGFYDECLRKY--GNANVWKHFTDLFDYLPLTALIESQVFCLHGGLSPSLDTLDNIRALDRIQ-----------------------------------EVPHEG-------PMCDLLWSDPDDRCG-WGISPRGAGYTFGQDIASQFNHTNGLTL 870
            +AR +L +  N   VK      +T+CGD+HG+  DL+ +F   G   + N Y+F GD+VDRG  S+E + +L+   + Y   + + RGNHE   +   YGF  E L+KY      + +   +++ +LP+  +I++++  +HGG+S S D L+ +  L R +                                   + P E         + D+LWSDP  + G +  + RG G  FG D+ S+    N L +
Sbjct:  148 EARKVLKQMPNFSHVKTFPAKEITICGDLHGKLDDLMLIFYKNGLPSENNPYVFNGDFVDRGNNSMEILMILLVCFLVYPSDLHLNRGNHEDFMMNLRYGFTKEILQKYKLHGRKILQVLEEVYTWLPIGTIIDNEILVIHGGISESTD-LNTLHQLQRNKMKSVLMPPVLGNQETGEKRNKSASNYVEPRKVEPDKTPSEDLTKQEWEQIVDILWSDPRGKKGCYPNTSRGGGCYFGPDVTSKVLSKNQLKM 399          
BLAST of FC877918 vs. ExPASy Swiss-Prot
Match: YK84_CAEEL (Uncharacterized protein C30A5.4 OS=Caenorhabditis elegans GN=C30A5.4 PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 5.988e-18
Identity = 58/201 (28.86%), Postives = 94/201 (46.77%), Query Frame = 1
Query:  235 EQEVKILCEQARAILVEEWNVQPVKCPVTVCGDIHGQFHDLVELFRIGGNAPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYRDRITILRGNHESRQITQVYGFYDECLRKYGNANVWKHFTDLFDYLPLTALIESQVFCLHGGLSPSLDTLDNIRALDRIQEVPHEGPMCDLLWSDPDDRC-GWGISPRGAGYTFGQDI 834
            ++E + +  +A+ I   E  +  +  P  V G++HGQF+DL+ +F + G  P+T Y+F            E VT +                               +C        +W  F   F+ LP++ALI +++ C+HGGLSP+L  LD +R   +    P  G + D+LW+DPD     W  S RG+G+TFG ++
Sbjct:  133 KEEFENVIYEAQTIFSSEKALVDIDPPCVVVGNLHGQFNDLINMFILLGRPPETVYVF-----------TECVTSI------------------------------PKC-----GEEIWALFQRCFNNLPISALIATKILCMHGGLSPALTCLDELRNHPKPIRNPFRGIVNDMLWADPDPSVFEWKTSSRGSGFTFGTNV 287          
BLAST of FC877918 vs. ExPASy Swiss-Prot
Match: PPE1_HUMAN (Serine/threonine-protein phosphatase with EF-hands 1 OS=Homo sapiens GN=PPEF1 PE=1 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.926e-16
Identity = 61/227 (26.87%), Postives = 101/227 (44.49%), Query Frame = 1
Query:  316 VTVCGDIHGQFHDLVELFRIGGNAPDTN-YLFMGDYVDRGYYSVETVTLLVALKVRYRDRITILRGNHESRQITQVYGFYDECLRKY--GNANVWKHFTDLFDYLPLTALIESQVFCLHGGLSPSLDTLDNIRALDRIQE----------------------------------------------VPHE-GPMCDLLWSDPDDRCG-WGISPRGAGYTFGQDIASQ 843
            VT+CGD+HG+  DL  +F   G   + N Y+F GD+VDRG  S+E + +L    + Y + + + RGNHE   +   YGF  E L KY      + +   + + +LP+  ++++++  +HGG+S + D    +  L R++                                                 HE   + D+LWSDP  + G +  + RG G  FG D+ S+
Sbjct:  167 VTICGDLHGKLDDLFLIFYKNGLPSERNPYVFNGDFVDRGKNSIEILMILCVSFLVYPNDLHLNRGNHEDFMMNLRYGFTKEILHKYKLHGKRILQILEEFYAWLPIGTIVDNEILVIHGGISETTD----LNLLHRVERNKMKSVLIPPTETNRDHDTDSKHNKVGVTFNAHGRIKTNGSPTEHLTEHEWEQIIDILWSDPRGKNGCFPNTCRGGGCYFGPDVTSK 389          
BLAST of FC877918 vs. ExPASy Swiss-Prot
Match: PPP7I_ARATH (Serine/threonine-protein phosphatase 7 inactive homolog OS=Arabidopsis thaliana GN=At5g10900 PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 9.560e-16
Identity = 70/243 (28.81%), Postives = 108/243 (44.44%), Query Frame = 1
Query:  229 LPEQEVKILCEQARAILVEEWNVQPVK-----CPVTVCGDIHGQFHDLVELFRIGGNAPDTN--YLFMGDYVDRGYYSVETVTLLVALKVRYRDRITILRGNHESRQITQVYGFYDECLRKYGNAN--VWKHFTDLFDYLPLTALIESQVFCLHGGL---------SP-------SLDTLDNIRALDRIQEVPHEGPMCDLLWSDPDDRCGW---GISPRG-AGYTFGQDIASQFNHTNGLTL 870
            LP      L + A  IL +E N   +        V V GD+HGQ HDL+++F   G  P  N  ++F G+Y+ RG +S+E   +L+A K+   + + +LRG+ E+R   +   F  +   +YG     ++    D F  LPL ++I + V+  HGGL         SP       SL+ LD I      +       +  +LWS     C W   G+S     G  +G D    F   + L +
Sbjct:  191 LPHSVAVSLVDCASQILEKEANCVKINGCSEDSRVIVVGDLHGQLHDLLKIFDQSGR-PSQNQCFVFNGNYIGRGSWSLEVFLVLLAWKIMMPENVILLRGSSETRVSAEELDFLKDICDRYGEHGPMLYSKCIDCFKMLPLASVISNSVYTTHGGLFQSCGVHEESPNPSLLLGSLEELDKIERRQAGENDDENITLNHVLWS-----CPWMADGLSESNYKGLLWGADCTETFLQQSNLKM 427          
The following BLAST results are available for this feature:
BLAST of FC877918 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 198
Match NameE-valueIdentityDescription
RDGC_DROME6.182e-2332.14Serine/threonine-protein phosphatase rdgC OS=Droso... [more]
PPE2_HUMAN5.786e-2139.57Serine/threonine-protein phosphatase with EF-hands... [more]
PPE2_MOUSE7.557e-2140.88Serine/threonine-protein phosphatase with EF-hands... [more]
PPE1_RAT1.289e-2028.25Serine/threonine-protein phosphatase with EF-hands... [more]
PPE1_MOUSE8.356e-2028.06Serine/threonine-protein phosphatase with EF-hands... [more]
YK84_CAEEL5.988e-1828.86Uncharacterized protein C30A5.4 OS=Caenorhabditis ... [more]
PPE1_HUMAN1.926e-1626.87Serine/threonine-protein phosphatase with EF-hands... [more]
PPP7I_ARATH9.560e-1628.81Serine/threonine-protein phosphatase 7 inactive ho... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAQ5YO10RM1 IVIA1 Citrus clementina cDNA clone KN0AAQ5YO10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877918 ID=FC877918; Name=FC877918; organism=Citrus clementina; type=EST; length=870bp
CTGAGTTCGAGGGCCAAGGCAAATCCACTACCTTGTATCTCTCTTCAAAC
CCTAACCCTAATCGCAAATCTACGATGACCTGAACCTTCATCCAGCCCTC
ATTGCCCGTGCTCACGCTTCACTGTCCGATCACAGAATCATATCTAAAGG
CGTCGAACGAAATCTCAAACGATGCCGTCGCAGGCCGATCTGGACCGTCA
GATCGAGCACTTGATGCAGTGCAAGCCGTTGCCGGAACAGGAGGTAAAGA
TTTTGTGCGAGCAAGCGAGAGCTATTCTTGTGGAGGAATGGAACGTGCAA
CCCGTCAAATGCCCGGTCACCGTCTGCGGCGACATTCACGGACAGTTTCA
CGATCTCGTCGAGCTTTTTCGCATAGGTGGCAACGCTCCTGATACCAATT
ATCTCTTCATGGGCGACTATGTTGATCGTGGATACTACTCAGTAGAGACC
GTCACTCTTTTAGTTGCTCTGAAAGTACGTTATAGAGATAGAATAACAAT
TCTGAGGGGAAATCATGAGAGTCGTCAGATAACTCAAGTGTATGGATTTT
ATGATGAATGTTTGAGAAAATATGGAAATGCTAATGTCTGGAAGCATTTC
ACTGACCTTTTTGATTATCTGCCACTTACAGCTCTAATTGAGAGTCAGGT
TTTCTGCTTGCACGGAGGACTTTCCCCATCTTTGGATACATTAGATAATA
TACGTGCTCTGGACCGTATACAGGAGGTTCCTCATGAGGGCCCGATGTGT
GATCTCTTATGGTCTGATCCCGACGATCGATGTGGATGGGGAATATCTCC
TCGGGGTGCTGGGTACACATTTGGGCAGGATATAGCTTCACAGTTCAACC
ATACTAATGGGCTGACTCTT
back to top