FC877926
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC877926 vs. ExPASy Swiss-Prot
Match: RL6_THEAC (50S ribosomal protein L6P OS=Thermoplasma acidophilum GN=rpl6p PE=3 SV=1) HSP 1 Score: 82.4185 bits (202), Expect = 3.779e-15 Identity = 55/182 (30.22%), Postives = 93/182 (51.10%), Query Frame = 2 Query: 62 SETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDGETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTV-IRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEK 604 + ++ IPDG KV I+ + + +S++F N L+ DG T +KI+A + + T S + N+I G+ G++Y+M+ Y+HFP+ S+ K + I NF GE+ R +++ TV ++ D+V + G + V +AA I + +K D R F DGIY+ K Sbjct: 7 ARSIKIPDGFKVSISGTTVTISYGGKTISKNFA--NNYVKLVEDGST----IKINASKNNSMVRGIVGTWASEINNMIKGLKDGFQYEMKIDYSHFPMRVSV--KGKTVVIENFFGERSPRTAEIVGDTTVTVKGDRV----YIAGISKKDVGETAANIERSTIIKGFDPRVFQDGIYLISK 176
BLAST of FC877926 vs. ExPASy Swiss-Prot
Match: RL6_PICTO (50S ribosomal protein L6P OS=Picrophilus torridus GN=rpl6p PE=3 SV=1) HSP 1 Score: 79.7221 bits (195), Expect = 2.449e-14 Identity = 52/174 (29.89%), Postives = 91/174 (52.30%), Query Frame = 2 Query: 77 IPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDGETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVK-DELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYV 595 +PD V+ + ++++G G+ SR F+ + ++ +G + +KI ++ T + T S LI GVTKG+ Y M+ + HFP+ S+ + +E NFLGEK R ++DG V VK D + ++G D + +AA I + ++++ D R F DGI++ Sbjct: 12 LPDDVQATMENNELKIKGKLGEASRIFRDNYVKAYI--EGSS----VKIATSKNNKYTKGIVGTWYSETKLLIEGVTKGFEYHMKIDFTHFPMRVSVRGDKLIVE--NFLGEKSPRSAKIVDGCKV----SVKGDRITINGIDKRKIGETAANIERATYIRHFDARVFQDGIFL 173
BLAST of FC877926 vs. ExPASy Swiss-Prot
Match: RL6_THEVO (50S ribosomal protein L6P OS=Thermoplasma volcanium GN=rpl6p PE=3 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 2.293e-12 Identity = 53/182 (29.12%), Postives = 90/182 (49.45%), Query Frame = 2 Query: 62 SETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDGETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVK-DELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEK 604 + ++IP VKV ++ ++ + KL + F N L+ D K+KI + + + T S + N++ G+ +G++Y+M+ Y+HFP+ S+ K + I NF GE+ R +++ V VK D L L+G + V +AA I + +K D R F DGIY+ K Sbjct: 7 ASVIEIPKDVKVGLSGTMLSMTFGNKKLEKKFAD-NYVRLLVEDN-----KIKIVKSKNNSRERGIVGTWASEISNMVKGLKEGFQYEMKIDYSHFPMRVSV--KGKTVVIENFFGERSPRTAEIVGETQV----SVKGDRLFLNGPSKKDVGETAANIERATIIKGFDPRVFQDGIYLISK 176 The following BLAST results are available for this feature:
BLAST of FC877926 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 63
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Sequences
The
following sequences are available for this feature:
EST sequence >FC877926 ID=FC877926; Name=FC877926; organism=Citrus clementina; type=EST; length=892bpback to top |