FC877926

Overview
NameFC877926
Unique NameFC877926
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length892
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC877926 vs. ExPASy Swiss-Prot
Match: RL6_THEAC (50S ribosomal protein L6P OS=Thermoplasma acidophilum GN=rpl6p PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.779e-15
Identity = 55/182 (30.22%), Postives = 93/182 (51.10%), Query Frame = 2
Query:   62 SETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDGETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTV-IRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEK 604
            + ++ IPDG KV I+   + +      +S++F   N    L+ DG T    +KI+A   +      + T  S + N+I G+  G++Y+M+  Y+HFP+  S+    K + I NF GE+  R  +++   TV ++ D+V     + G   + V  +AA I +   +K  D R F DGIY+  K
Sbjct:    7 ARSIKIPDGFKVSISGTTVTISYGGKTISKNFA--NNYVKLVEDGST----IKINASKNNSMVRGIVGTWASEINNMIKGLKDGFQYEMKIDYSHFPMRVSV--KGKTVVIENFFGERSPRTAEIVGDTTVTVKGDRV----YIAGISKKDVGETAANIERSTIIKGFDPRVFQDGIYLISK 176          
BLAST of FC877926 vs. ExPASy Swiss-Prot
Match: RL6_PICTO (50S ribosomal protein L6P OS=Picrophilus torridus GN=rpl6p PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.449e-14
Identity = 52/174 (29.89%), Postives = 91/174 (52.30%), Query Frame = 2
Query:   77 IPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDGETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVK-DELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYV 595
            +PD V+  +    ++++G  G+ SR F+   +  ++  +G +    +KI     ++ T   + T  S    LI GVTKG+ Y M+  + HFP+  S+  +   +E  NFLGEK  R   ++DG  V     VK D + ++G D   +  +AA I +  ++++ D R F DGI++
Sbjct:   12 LPDDVQATMENNELKIKGKLGEASRIFRDNYVKAYI--EGSS----VKIATSKNNKYTKGIVGTWYSETKLLIEGVTKGFEYHMKIDFTHFPMRVSVRGDKLIVE--NFLGEKSPRSAKIVDGCKV----SVKGDRITINGIDKRKIGETAANIERATYIRHFDARVFQDGIFL 173          
BLAST of FC877926 vs. ExPASy Swiss-Prot
Match: RL6_THEVO (50S ribosomal protein L6P OS=Thermoplasma volcanium GN=rpl6p PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.293e-12
Identity = 53/182 (29.12%), Postives = 90/182 (49.45%), Query Frame = 2
Query:   62 SETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDGETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVK-DELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEK 604
            +  ++IP  VKV ++  ++ +     KL + F   N    L+ D      K+KI     + +    + T  S + N++ G+ +G++Y+M+  Y+HFP+  S+    K + I NF GE+  R  +++    V     VK D L L+G   + V  +AA I +   +K  D R F DGIY+  K
Sbjct:    7 ASVIEIPKDVKVGLSGTMLSMTFGNKKLEKKFAD-NYVRLLVEDN-----KIKIVKSKNNSRERGIVGTWASEISNMVKGLKEGFQYEMKIDYSHFPMRVSV--KGKTVVIENFFGERSPRTAEIVGETQV----SVKGDRLFLNGPSKKDVGETAANIERATIIKGFDPRVFQDGIYLISK 176          
The following BLAST results are available for this feature:
BLAST of FC877926 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63
Match NameE-valueIdentityDescription
RL6_THEAC3.779e-1530.2250S ribosomal protein L6P OS=Thermoplasma acidophi... [more]
RL6_PICTO2.449e-1429.8950S ribosomal protein L6P OS=Picrophilus torridus ... [more]
RL6_THEVO2.293e-1229.1250S ribosomal protein L6P OS=Thermoplasma volcaniu... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA49BE12RM1 IVIA1 Citrus clementina cDNA clone IC0AAA49BE12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877926 ID=FC877926; Name=FC877926; organism=Citrus clementina; type=EST; length=892bp
CGTATGAGGAGAAGAAGAAGGAAGATATTACAGAGAGAGGAAAATGAAGA
CAATTCTCTCTTCAGAGACTATGGACATCCCAGATGGGGTGAAAGTCAAG
ATAAATGCAAAGGTTATTGAAGTAGAGGGACCGAGAGGTAAGCTCAGCCG
CGACTTCAAGCATTTGAACCTCGACTTCCATCTCATGACTGACGGGGAAA
CCGGTAAGCGCAAGCTTAAGATCGATGCCTGGTTCGGCTCTCGCAAGACC
AGCGCCGCCATCAGAACTGCCCTCAGCCATGTCGGCAATCTCATCACTGG
TGTTACCAAGGGCTATCGCTACAAGATGAGATTTGTGTACGCTCACTTTC
CCATCAACGCCTCCATCGGTAACAATAACAAGGCCATTGAGATCCGTAAC
TTTCTTGGAGAGAAAAAGGTTCGAAAAGTGGATATGCTTGATGGTGTTAC
CGTCATTAGGTCCGATAAGGTTAAGGATGAACTCGTTCTTGATGGAAATG
ACATTGAACTCGTGTCTCGCTCTGCTGCTCTAATCAATCAGAAATGCCAT
GTGAAGAACAAGGACATTAGGAAATTTCTTGATGGGATCTATGTCAGTGA
GAAAAGCACCATACTTGGAGAAGAATGATGATTAGCTTTCGAATTTTCTT
GTCATAGTAATGTTATGAATTTTTTTTTAAATCTTTTTAATTTTGCCTCT
TACTTTGAGTTGAGGACATGCTTTTGGTTGTATTTGGGATTTGGGACTTG
GGAGTTCTAGATTTCAATTTTATGTCTTCAATTGCTATCATCACAATATA
TGTATGGATTTTATAGCTATGCATCTGGCATTTTTGATCTTTTATCTACC
TCTTGAATAATCTTCTAAAAAAAAAAAAAAAAAAAAAAAAAA
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