FC877936

Overview
NameFC877936
Unique NameFC877936
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length914
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC877936 vs. ExPASy Swiss-Prot
Match: SYP_METVS (Prolyl-tRNA synthetase OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=proS PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.899e-28
Identity = 42/115 (36.52%), Postives = 69/115 (60.00%), Query Frame = 3
Query:  573 VRPTSETIVNHMFTQWIHSYRDLPLLVNQWANVTRWEMR-TKPFVRTLEFL-WQEGHTAHATPEEAEKEAMQMIDIYTKFAYEHTAIPVIAGRKSKVETFAGASRTYTIEAMMGD 911
            +RPTSET + +M  QWI  + DLP+ + Q  N  R+E + T+P +R  E + ++E HTAH+T ++  K+  + I+IY KF ++   IPVI  ++ + + F GA  T   + +  D
Sbjct:   98 LRPTSETTMYYMMKQWIKVHTDLPMKLYQVVNTFRYETKHTRPLIRLREIMSFKEAHTAHSTQDDCNKQIKEAIEIYGKF-FDEICIPVIISKRPEWDKFPGADYTMAFDTIFPD 211          

HSP 2 Score: 65.0846 bits (157), Expect = 3.899e-28
Identity = 33/95 (34.74%), Postives = 49/95 (51.58%), Query Frame = 2
Query:  278 DFNAWYLDVISNAELADYG-PVRGTMVIRPYGYAIWEAIQDYLNVKFKETGHSNMYFPQFIPYSFIEKEASHVEGFSPELALVTIGGGKELEEKL 559
            +F+ WY +++  A + D   P++G  V  PYG+ I     + L     +T H    FP  IP + + KE  H++GF  E+  VT GG   LE KL
Sbjct:    2 EFSEWYSEILEKAGIYDLRYPIKGCGVYLPYGFKIRRYSFEILRKLLDDTNHDETLFPMLIPENLLAKEGEHIKGFEDEVYWVTHGGKSPLEIKL 96          
BLAST of FC877936 vs. ExPASy Swiss-Prot
Match: SYP_MYCPN (Prolyl-tRNA synthetase OS=Mycoplasma pneumoniae GN=proS PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 5.072e-28
Identity = 43/113 (38.05%), Postives = 62/113 (54.87%), Query Frame = 3
Query:  573 VRPTSETIVNHMFTQWIHSYRDLPLLVNQWANVTRWEMRTKPFVRTLEFLWQEGHTAHATPEEAEKEAMQMIDIYTKFAYEHTAIPVIAGRKSKVETFAGASRTYTIEAMMGD 911
            +RPTSE    +++ +   SY++LP++ NQW  V R E  T+PF+R  EF WQE H   +    +E  A+    +Y         IP   G KS  E FAGA  T+T+E++M D
Sbjct:  121 LRPTSEIAFCNLWKKQSFSYQNLPVIYNQWTCVFRAEKNTRPFLRNSEFYWQETHGLFSDGVNSESAAIAFWKLYQDIIVNQLCIPAFVGLKSPNERFAGAQNTWTVESIMPD 233          

HSP 2 Score: 60.8474 bits (146), Expect = 5.072e-28
Identity = 40/121 (33.06%), Postives = 56/121 (46.28%), Query Frame = 2
Query:  269 RSQDFNAWYLDVISNAELADYGPVRGTMVIRPYGYAIWEAIQDYLN-----VKFKETGHSNMYFPQFIP------------------YSFIEKEASHVEGFSPELALVTIGGGKELEEKLV 562
            + Q+   WY  ++S A+L  YG V+GT    P  + +W  IQ   N     +K K+     +   QFIP                  YS  +KE  HVEGF+PEL L+   G K+L + LV
Sbjct:    4 KDQNLTLWYDQLLSKAQLVSYGDVKGTNCFLPNSWNLWLQIQRLYNNATALIKLKD----KVILKQFIPIEPLPYTVEQVQLPTLSFYSEYQKEKRHVEGFNPELFLIEQIGTKKLHDPLV 120          
BLAST of FC877936 vs. ExPASy Swiss-Prot
Match: SYP_PYRKO (Prolyl-tRNA synthetase OS=Pyrococcus kodakaraensis GN=proS PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 6.604e-28
Identity = 43/115 (37.39%), Postives = 67/115 (58.26%), Query Frame = 3
Query:  573 VRPTSETIVNHMFTQWIHSYRDLPLLVNQWANVTRWEMR-TKPFVRTLEF-LWQEGHTAHATPEEAEKEAMQMIDIYTKFAYEHTAIPVIAGRKSKVETFAGASRTYTIEAMMGD 911
            +RPTSET +  MF+ WI S+ DLP  + Q  NV R+E + T+P +R  E   + E HTAH + E+AE++  + ++I+   A    A+P I  ++ + + F GA  +   E MM D
Sbjct:  107 LRPTSETAMYSMFSLWIRSHADLPFKIYQIVNVYRYETKHTRPLIRVREISRFFEAHTAHDSYEDAERQIKEDLEIFDNLA-RFLALPYIISKRPEWDKFPGAYYSLGAEVMMPD 220          

HSP 2 Score: 71.2478 bits (173), Expect = 6.604e-28
Identity = 35/98 (35.71%), Postives = 58/98 (59.18%), Query Frame = 2
Query:  272 SQDFNAWYLDVISNAELADYG-PVRGTMVIRPYGYAIWEAIQDYLNVKFKETGHSNMYFPQFIPYSFIEKEASHVEGFSPELALVTIGGGKELEEKLV 562
            S++F+ WY ++I  A + D   PV+G  V  PYG  I   I+ +++ + + TGH  + FP  IP +  +KEA H++GF  E+  VT  G + L+ +L+
Sbjct:    9 SENFSEWYNELIETAGIQDKRYPVKGMNVWLPYGLKIMRNIERFIHAEMERTGHDEVLFPALIPETEFQKEAEHIKGFEGEVYWVTHAGLEPLDVRLI 106          
BLAST of FC877936 vs. ExPASy Swiss-Prot
Match: SYP_SULIK (Prolyl-tRNA synthetase OS=Sulfolobus islandicus (strain M.16.4 / Kamchatka #3) GN=proS PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 8.597e-28
Identity = 39/115 (33.91%), Postives = 65/115 (56.52%), Query Frame = 3
Query:  573 VRPTSETIVNHMFTQWIHSYRDLPLLVNQWANVTRWEMR-TKPFVRTLEF-LWQEGHTAHATPEEAEKEAMQMIDIYTKFAYEHTAIPVIAGRKSKVETFAGASRTYTIEAMMGD 911
            +RPTSE  +  M   W+ SY+ LP    Q  +V R+E + T+P +R  E   ++E HT H T ++A+++  + I+IY K  + +  IP +   + + + FAGA  TY  + +M D
Sbjct:  108 LRPTSEVAITTMENLWLKSYKQLPKKYYQIVSVFRYETKATRPMIRLREITTFKEAHTVHETYDDAQRQVEEAIEIYKKI-FNNLTIPYVLSERPEWDRFAGALHTYAFDTIMPD 221          

HSP 2 Score: 71.2478 bits (173), Expect = 8.597e-28
Identity = 35/98 (35.71%), Postives = 56/98 (57.14%), Query Frame = 2
Query:  272 SQDFNAWYLDVISNAELADYG--PVRGTMVIRPYGYAIWEAIQDYLNVKFKETGHSNMYFPQFIPYSFIEKEASHVEGFSPELALVTIGGGKELEEKL 559
            S++F+ W+  V+   E  DYG  PV+G  V  PYG+ + + I   +      TGH  + FP  IP   + +E++H++GF  E+  VT GG ++L+ KL
Sbjct:    9 SKNFSEWFDWVLREGEFYDYGRYPVKGMGVWMPYGFKLRQNIISIIRNLLDSTGHEEVLFPLLIPEDLLSRESTHIKGFEEEVFWVTKGGSEDLDVKL 106          
BLAST of FC877936 vs. ExPASy Swiss-Prot
Match: SYP_SULTO (Prolyl-tRNA synthetase OS=Sulfolobus tokodaii GN=proS PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.119e-27
Identity = 37/97 (38.14%), Postives = 56/97 (57.73%), Query Frame = 2
Query:  275 QDFNAWYLDVISNAELADYG--PVRGTMVIRPYGYAIWEAIQDYLNVKFKETGHSNMYFPQFIPYSFIEKEASHVEGFSPELALVTIGGGKELEEKL 559
            ++F+ W   V+  AE+ DYG  PV+G  V  PYG+ I + +   +     ETGH  + FP  IP   ++KE+ H+ GF  E+  VT GG ++L+ KL
Sbjct:   10 KNFSEWLDWVLREAEIYDYGRYPVKGMGVWMPYGFKIRQNVLQLIRKLLDETGHEEVLFPLLIPEDLLKKESEHIRGFEEEVYWVTKGGSQDLDVKL 106          

HSP 2 Score: 70.8626 bits (172), Expect = 1.119e-27
Identity = 39/115 (33.91%), Postives = 66/115 (57.39%), Query Frame = 3
Query:  573 VRPTSETIVNHMFTQWIHSYRDLPLLVNQWANVTRWEMR-TKPFVRTLEF-LWQEGHTAHATPEEAEKEAMQMIDIYTKFAYEHTAIPVIAGRKSKVETFAGASRTYTIEAMMGD 911
            +RPTSET +  M + W+ SY+ LP    Q  +V R+E + T+P +R  E   ++E HT H T E+A ++  + I+IY  F ++   IP +  ++ + + FAGA  T   + ++ D
Sbjct:  108 LRPTSETSITFMESFWVKSYKQLPKKYYQIVSVFRYETKATRPMMRLREITTFKEAHTLHETYEDAARQVDEAINIYKAF-FDELGIPYMISKRPEWDKFAGAEYTIAFDTILPD 221          
BLAST of FC877936 vs. ExPASy Swiss-Prot
Match: SYP_METBF (Prolyl-tRNA synthetase OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=proS PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.457e-27
Identity = 42/115 (36.52%), Postives = 67/115 (58.26%), Query Frame = 3
Query:  573 VRPTSETIVNHMFTQWIHSYRDLPLLVNQWANVTRWEMR-TKPFVRTLEFL-WQEGHTAHATPEEAEKEAMQMIDIYTKFAYEHTAIPVIAGRKSKVETFAGASRTYTIEAMMGD 911
            +RPTSET +  M+  W+ S+ D P+ + Q  N  R+E + T+P +R  E   ++E HT HAT E+AE +  + I +YT+  Y    +PV+  R+   + F GA  T  ++A+M D
Sbjct:  111 LRPTSETAIYPMYKMWVRSHADFPIKIYQIVNTFRYETKHTRPLIRLREITSFKEAHTVHATWEDAEAQVKEAIGLYTEI-YRRLGVPVLRSRRPDWDKFPGADYTDALDAIMPD 224          

HSP 2 Score: 62.7734 bits (151), Expect = 1.457e-27
Identity = 33/96 (34.38%), Postives = 51/96 (53.12%), Query Frame = 2
Query:  266 PRSQDFNAWYLDVISNAELADYG-PVRGTMVIRPYGYAIWEAIQDYLNVKFKETGHSNMYFPQFIPYSFIEKEASHVEGFSPELALVTIGGGKELE 550
            P  ++F+ WY +++  AE+ D   PV+G  V  P+G+AI     + +      +GH    FP  IP +   KEA H++GF  E+  VT GG   L+
Sbjct:   11 PPKEEFSEWYNELLWMAEIMDVRYPVKGLYVWYPFGFAIRRNTYNIIREILDNSGHQEALFPLLIPENEFMKEAEHIKGFEDEVYWVTHGGRDTLD 106          
BLAST of FC877936 vs. ExPASy Swiss-Prot
Match: SYP_METMP (Prolyl-tRNA synthetase OS=Methanococcus maripaludis GN=proS PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.458e-27
Identity = 38/115 (33.04%), Postives = 66/115 (57.39%), Query Frame = 3
Query:  573 VRPTSETIVNHMFTQWIHSYRDLPLLVNQWANVTRWEMR-TKPFVRTLEFL-WQEGHTAHATPEEAEKEAMQMIDIYTKFAYEHTAIPVIAGRKSKVETFAGASRTYTIEAMMGD 911
            +RPTSET + +M  QWI  + DLPL + Q  N  R+E + T+P +R  E + ++E HTAHAT +E + +  + + +Y  F ++   +P +  ++ + + F GA  T   + +  D
Sbjct:   98 LRPTSETTMYYMMKQWIKVHTDLPLKLYQVVNTFRYETKHTRPLIRLREIMSFKEAHTAHATKKECDAQIEEALTLYKAF-FDEIGVPYVISKRPEWDKFPGADYTMAFDTIYPD 211          

HSP 2 Score: 70.0922 bits (170), Expect = 1.458e-27
Identity = 36/95 (37.89%), Postives = 50/95 (52.63%), Query Frame = 2
Query:  278 DFNAWYLDVISNAELADYG-PVRGTMVIRPYGYAIWEAIQDYLNVKFKETGHSNMYFPQFIPYSFIEKEASHVEGFSPELALVTIGGGKELEEKL 559
            +F+ WY D++  A + D   P++G  V  PYG+ I     + L     ETGH    FP  IP + + KE  H++GF  E+  VT GG   LE KL
Sbjct:    2 EFSEWYSDILEKAGIYDLRYPIKGCGVYLPYGFKIRRYSFEILRKLLDETGHDETLFPMLIPENLLAKEGEHIKGFEDEVFWVTHGGKTPLEVKL 96          
BLAST of FC877936 vs. ExPASy Swiss-Prot
Match: SYP_SULSO (Prolyl-tRNA synthetase OS=Sulfolobus solfataricus GN=proS PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.896e-27
Identity = 40/115 (34.78%), Postives = 65/115 (56.52%), Query Frame = 3
Query:  573 VRPTSETIVNHMFTQWIHSYRDLPLLVNQWANVTRWEMR-TKPFVRTLEF-LWQEGHTAHATPEEAEKEAMQMIDIYTKFAYEHTAIPVIAGRKSKVETFAGASRTYTIEAMMGD 911
            +RPTSE  +  M   W+ SY+ LP    Q  +V R+E + T+P +R  E   ++E HT H T ++A+K+  + I+IY K  ++   IP +   + + + FAGA  TY  + +M D
Sbjct:  108 LRPTSEVAITTMENLWLKSYKQLPKKYYQIVSVFRYETKATRPMIRLREITTFKEAHTVHETYDDAQKQVEEAIEIYKKI-FDTLTIPYVLSERPEWDRFAGALHTYAFDTIMPD 221          

HSP 2 Score: 69.3218 bits (168), Expect = 1.896e-27
Identity = 34/98 (34.69%), Postives = 55/98 (56.12%), Query Frame = 2
Query:  272 SQDFNAWYLDVISNAELADYG--PVRGTMVIRPYGYAIWEAIQDYLNVKFKETGHSNMYFPQFIPYSFIEKEASHVEGFSPELALVTIGGGKELEEKL 559
            S++F+ W+  V+   E  DYG  P++G  V  PYG+ + + I   +      TGH  + FP  IP   + +E++H++GF  E+  VT GG  +L+ KL
Sbjct:    9 SKNFSEWFDWVLREGEFYDYGRYPIKGMGVWMPYGFKLRQNIIGIIRNFLDSTGHEEVLFPLLIPEDLLRRESTHIKGFEEEVFWVTKGGSTDLDVKL 106          
BLAST of FC877936 vs. ExPASy Swiss-Prot
Match: SYP_METMJ (Prolyl-tRNA synthetase OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=proS PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.897e-27
Identity = 45/115 (39.13%), Postives = 65/115 (56.52%), Query Frame = 3
Query:  573 VRPTSETIVNHMFTQWIHSYRDLPLLVNQWANVTRWEMR-TKPFVRTLEFL-WQEGHTAHATPEEAEKEAMQMIDIYTKFAYEHTAIPVIAGRKSKVETFAGASRTYTIEAMMGD 911
            +RPTSET +  M+  WI S+ DLPL + Q  N  R+E + T+P +R  E   ++E HT HAT EEA  +    I +Y +F Y+   +PVI  R+   + F GA  T   + +M D
Sbjct:  108 LRPTSETAIYPMYALWIRSHTDLPLRLYQVVNTFRYETKHTRPLIRLREITSFKEAHTVHATREEAAAQVETAIALYREF-YDTLRVPVILSRRPAWDKFPGADYTIAADTIMPD 221          

HSP 2 Score: 64.6994 bits (156), Expect = 1.897e-27
Identity = 36/99 (36.36%), Postives = 53/99 (53.54%), Query Frame = 2
Query:  266 PRSQDFNAWYLDVISNAELADYG-PVRGTMVIRPYGYAIWEAIQDYLNVKFKETGHSNMYFPQFIPYSFIEKEASHVEGFSPELALVTIGGGKELEEKL 559
            PR ++F+ WY D++  AE+ D   PV+G  V  P+G+ I +     L     +  H+   FP  IP +   KEA H++GF  E+  VT GG  EL+  L
Sbjct:    9 PRKENFSEWYNDILWRAEIMDVRYPVKGLYVWYPHGFGIRKRAYGVLR-DLMDRDHAETMFPLLIPKTEFMKEAEHIKGFEDEVYWVTHGGRNELDVPL 106          
BLAST of FC877936 vs. ExPASy Swiss-Prot
Match: SYP_PYRAE (Prolyl-tRNA synthetase OS=Pyrobaculum aerophilum GN=proS PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.468e-27
Identity = 40/115 (34.78%), Postives = 66/115 (57.39%), Query Frame = 3
Query:  573 VRPTSETIVNHMFTQWIHSYRDLPLLVNQWANVTRWEMR-TKPFVRTLEF-LWQEGHTAHATPEEAEKEAMQMIDIYTKFAYEHTAIPVIAGRKSKVETFAGASRTYTIEAMMGD 911
            +RPTSET +  M   WI  Y+DLPL V Q  +V R E + T P +R  E  +++E HT HA  E+AE++  + ++IY K  ++   +  +  ++ + + FAGA  T   + ++ D
Sbjct:  112 LRPTSETAIMPMVKLWIQDYKDLPLRVYQIVSVFRAETKMTHPMIRLREISMFKEAHTVHADKEDAERQVREAVEIY-KRIFDEMCLAYLINKRPEWDKFAGAEYTIAFDTILPD 225          

HSP 2 Score: 69.707 bits (169), Expect = 2.468e-27
Identity = 38/92 (41.30%), Postives = 53/92 (57.61%), Query Frame = 2
Query:  290 WYLDVISNAELADYG-PVRGTMVIRPYGYAIWEAIQDYLNVKFKETGHSNMYFPQFIPYSFIEKEASHVEGFSPELALVTIGGGKELEEKLV 562
            W+  ++  AEL D   PV+G  V RPYG  I   +++ +     ETGH  + FP FIPY F  KE+ H++GF  E+  V+ GG  E  E+LV
Sbjct:   22 WFHWLLREAELYDVRYPVKGAYVWRPYGMKIRRNVENLIRKFHDETGHEEVLFPVFIPYEFFGKESQHIKGFEKEVFWVSKGG--EAGERLV 111          
The following BLAST results are available for this feature:
BLAST of FC877936 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 162
Match NameE-valueIdentityDescription
SYP_METVS3.899e-2836.52Prolyl-tRNA synthetase OS=Methanococcus vannielii ... [more]
SYP_MYCPN5.072e-2838.05Prolyl-tRNA synthetase OS=Mycoplasma pneumoniae GN... [more]
SYP_PYRKO6.604e-2837.39Prolyl-tRNA synthetase OS=Pyrococcus kodakaraensis... [more]
SYP_SULIK8.597e-2833.91Prolyl-tRNA synthetase OS=Sulfolobus islandicus (s... [more]
SYP_SULTO1.119e-2738.14Prolyl-tRNA synthetase OS=Sulfolobus tokodaii GN=p... [more]
SYP_METBF1.457e-2736.52Prolyl-tRNA synthetase OS=Methanosarcina barkeri (... [more]
SYP_METMP1.458e-2733.04Prolyl-tRNA synthetase OS=Methanococcus maripaludi... [more]
SYP_SULSO1.896e-2734.78Prolyl-tRNA synthetase OS=Sulfolobus solfataricus ... [more]
SYP_METMJ1.897e-2739.13Prolyl-tRNA synthetase OS=Methanoculleus marisnigr... [more]
SYP_PYRAE2.468e-2734.78Prolyl-tRNA synthetase OS=Pyrobaculum aerophilum G... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA44BD03RM1 IVIA1 Citrus clementina cDNA clone IC0AAA44BD03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877936 ID=FC877936; Name=FC877936; organism=Citrus clementina; type=EST; length=914bp
CTCGAAACGACAATAGGAAATGGTATCGGCTTTAAGACTCCCCTCCTTAC
ATCTCACTAATCTCTTCTCCTCCTCTCCCTGTATCTCCCGCCGGTCTTCG
GCGATTCTACGGCGTCACCATCGCCTTCGGCCTCCGCCGACTCTGACTGC
TGGATTCTCCGCTCAGAGCGCGGCGTCTAGTCCGCCGGAAACCGATGACA
AAGTCGTGGAAATCGAGAAGAACCGAGCGAGTCAAGACCGAGGCAACCGG
GAACGAGTCATCACGCCAAGGTCGCAGGACTTCAATGCTTGGTACCTCGA
TGTTATTTCCAACGCGGAGCTTGCTGATTACGGTCCGGTCCGTGGGACCA
TGGTTATTAGGCCTTACGGATACGCTATTTGGGAGGCAATTCAGGATTAT
TTGAATGTAAAGTTCAAGGAGACAGGGCACAGTAACATGTACTTCCCACA
GTTTATACCATACTCCTTCATCGAGAAAGAAGCCAGCCATGTTGAGGGAT
TCAGTCCAGAATTGGCTCTTGTAACTATTGGAGGTGGAAAGGAACTAGAA
GAAAAACTTGTGGCTGTAACAGGTTCGACCTACAAGTGAAACAATTGTAA
ATCACATGTTTACTCAGTGGATTCATAGTTATCGCGATCTTCCTCTCCTG
GTTAACCAGTGGGCAAATGTCACACGATGGGAGATGCGCACAAAACCATT
TGTGAGAACCCTTGAATTTCTATGGCAGGAGGGCCATACTGCTCATGCCA
CTCCAGAAGAGGCAGAGAAAGAGGCAATGCAGATGATTGATATTTACACA
AAGTTTGCTTATGAGCATACTGCAATACCCGTTATTGCTGGTCGAAAATC
GAAAGTGGAAACTTTTGCTGGTGCTTCAAGGACCTACACCATAGAGGCTA
TGATGGGTGATAAG
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