FC877936

Overview
NameFC877936
Unique NameFC877936
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length914
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC877936 vs. ExPASy Swiss-Prot
Match: SYP_THEAC (Prolyl-tRNA synthetase OS=Thermoplasma acidophilum GN=proS PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 8.725e-24
Identity = 39/112 (34.82%), Postives = 64/112 (57.14%), Query Frame = 3
Query:  573 VRPTSETIVNHMFTQWIHSYRDLPLLVNQWANVTRWEMR-TKPFVRTLEFLWQEGHTAHATPEEAEKEAMQMIDIYTKFAYEHTAIPVIAGRKSKVETFAGASRTYTIEAMM 905
            +RPTSE+ +  MF+ WI S+ DLPL + Q  +V R+E + T+ F+R  E  + E HTAHAT E+AE +  Q  +I+ + +     +P    ++   + F GA  T   + ++
Sbjct:  103 LRPTSESAMYPMFSLWIRSHADLPLKIYQIVSVYRYETKHTRSFIRIREIHFFEAHTAHATYEDAEAQMDQYKEIWREIS-SLLCLPYFYDQRPDWDKFPGAMYTIAFDTVL 213          

HSP 2 Score: 63.929 bits (154), Expect = 8.725e-24
Identity = 35/98 (35.71%), Postives = 54/98 (55.10%), Query Frame = 2
Query:  269 RSQDFNAWYLDVISNAELADYG-PVRGTMVIRPYGYAIWEAIQDYLNVKFKETGHSNMYFPQFIPYSFIEKEASHVEGFSPELALVTIGGGKELEEKL 559
            + ++F+ WY ++I+ AEL+D   PV+G  V  PYG+ I   I   +     +     + FP  I  S +E E  H+ GF  E+  VT GG ++LEE+L
Sbjct:    4 KKENFSEWYNEIITLAELSDKRYPVKGMNVWLPYGWKIMSLIDSIVRRAVDKRNFQEVNFPILIGRSMLEVEFEHIRGFENEIYWVTKGGKEKLEEEL 101          
BLAST of FC877936 vs. ExPASy Swiss-Prot
Match: SYP_PICTO (Prolyl-tRNA synthetase OS=Picrophilus torridus GN=proS PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 7.657e-22
Identity = 39/112 (34.82%), Postives = 63/112 (56.25%), Query Frame = 3
Query:  573 VRPTSETIVNHMFTQWIHSYRDLPLLVNQWANVTRWEMR-TKPFVRTLEFLWQEGHTAHATPEEAEKEAMQMIDIYTKFAYEHTAIPVIAGRKSKVETFAGASRTYTIEAMM 905
            +RPTSE+ +  MF  WI S++DLPL + Q  +V R+E + T+ F+R  E  + E HTAH    +AE++  + +DI++  A E   +P     +   + F GA  T   + +M
Sbjct:  103 LRPTSESAMYTMFPLWIRSHQDLPLKIYQIVSVYRYETKHTRSFIRVREIHFFEAHTAHVDYGDAERQMSEYMDIWSSIA-EKLCLPYNIDMRPDWDKFPGAKYTLAFDTLM 213          

HSP 2 Score: 55.0694 bits (131), Expect = 7.657e-22
Identity = 30/98 (30.61%), Postives = 51/98 (52.04%), Query Frame = 2
Query:  269 RSQDFNAWYLDVISNAELADYG-PVRGTMVIRPYGYAIWEAIQDYLNVKFKETGHSNMYFPQFIPYSFIEKEASHVEGFSPELALVTIGGGKELEEKL 559
            + ++F+ WY ++I  A+L+D    ++G  V  PYG  I   I + +           + FP  I  S +E E  H++GF  E+  VT GG ++L+ +L
Sbjct:    4 KKENFSEWYNEIIDLAKLSDKRYAIKGMNVWLPYGLKIMRLIDNIIRDNVDNKSFQEVSFPVLITRSQLETEFEHIKGFENEIYWVTKGGSEKLDIEL 101          
The following BLAST results are available for this feature:
BLAST of FC877936 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 162
Match NameE-valueIdentityDescription
SYP_THEAC8.725e-2434.82Prolyl-tRNA synthetase OS=Thermoplasma acidophilum... [more]
SYP_PICTO7.657e-2234.82Prolyl-tRNA synthetase OS=Picrophilus torridus GN=... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA44BD03RM1 IVIA1 Citrus clementina cDNA clone IC0AAA44BD03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877936 ID=FC877936; Name=FC877936; organism=Citrus clementina; type=EST; length=914bp
CTCGAAACGACAATAGGAAATGGTATCGGCTTTAAGACTCCCCTCCTTAC
ATCTCACTAATCTCTTCTCCTCCTCTCCCTGTATCTCCCGCCGGTCTTCG
GCGATTCTACGGCGTCACCATCGCCTTCGGCCTCCGCCGACTCTGACTGC
TGGATTCTCCGCTCAGAGCGCGGCGTCTAGTCCGCCGGAAACCGATGACA
AAGTCGTGGAAATCGAGAAGAACCGAGCGAGTCAAGACCGAGGCAACCGG
GAACGAGTCATCACGCCAAGGTCGCAGGACTTCAATGCTTGGTACCTCGA
TGTTATTTCCAACGCGGAGCTTGCTGATTACGGTCCGGTCCGTGGGACCA
TGGTTATTAGGCCTTACGGATACGCTATTTGGGAGGCAATTCAGGATTAT
TTGAATGTAAAGTTCAAGGAGACAGGGCACAGTAACATGTACTTCCCACA
GTTTATACCATACTCCTTCATCGAGAAAGAAGCCAGCCATGTTGAGGGAT
TCAGTCCAGAATTGGCTCTTGTAACTATTGGAGGTGGAAAGGAACTAGAA
GAAAAACTTGTGGCTGTAACAGGTTCGACCTACAAGTGAAACAATTGTAA
ATCACATGTTTACTCAGTGGATTCATAGTTATCGCGATCTTCCTCTCCTG
GTTAACCAGTGGGCAAATGTCACACGATGGGAGATGCGCACAAAACCATT
TGTGAGAACCCTTGAATTTCTATGGCAGGAGGGCCATACTGCTCATGCCA
CTCCAGAAGAGGCAGAGAAAGAGGCAATGCAGATGATTGATATTTACACA
AAGTTTGCTTATGAGCATACTGCAATACCCGTTATTGCTGGTCGAAAATC
GAAAGTGGAAACTTTTGCTGGTGCTTCAAGGACCTACACCATAGAGGCTA
TGATGGGTGATAAG
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