FC877936

Overview
NameFC877936
Unique NameFC877936
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length914
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC877936 vs. ExPASy Swiss-Prot
Match: SYP_NOVAD (Prolyl-tRNA synthetase OS=Novosphingobium aromaticivorans (strain DSM 12444) GN=proS PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 2.493e-57
Identity = 66/113 (58.41%), Postives = 83/113 (73.45%), Query Frame = 3
Query:  573 VRPTSETIVNHMFTQWIHSYRDLPLLVNQWANVTRWEMRTKPFVRTLEFLWQEGHTAHATPEEAEKEAMQMIDIYTKFAYEHTAIPVIAGRKSKVETFAGASRTYTIEAMMGD 911
            VRPTSET++    ++WI S+RDLPLL NQWANV RWEMRT+ F+RT EFLWQEGHTAH    +A KE ++ +++Y  FA    A+PVIAG K + E F GA  T++IEAMM D
Sbjct:  125 VRPTSETVIGAAMSRWIQSWRDLPLLTNQWANVVRWEMRTRMFLRTSEFLWQEGHTAHVDEADAMKETLRALEMYRAFAEGPLAMPVIAGPKPENERFPGAVETFSIEAMMQD 237          

HSP 2 Score: 103.605 bits (257), Expect = 2.493e-57
Identity = 56/111 (50.45%), Postives = 69/111 (62.16%), Query Frame = 2
Query:  269 RSQDFNAWYLDVISNAELADYGPVRGTMVIRPYGYAIWEAIQDYLNVKFKETGHSNMYFPQFIPYSFIEKEASHVEGFSPELALVT----IGGGK---------ELEEKLV 562
            R+ DF  WY  VI+ AELA+   VRG MVI+P+GY IWE IQ  ++ + KE G  N YFP FIP S+  KEA HVEGF+ E+A+VT    I  GK         +LEE LV
Sbjct:   14 RADDFAQWYQAVIAEAELAEESGVRGCMVIKPWGYGIWERIQKLMDAEIKEAGVENCYFPLFIPLSYFTKEAEHVEGFAKEMAVVTHHRLISDGKGGLTPDPEAKLEEPLV 124          
BLAST of FC877936 vs. ExPASy Swiss-Prot
Match: SYP_AYWBP (Prolyl-tRNA synthetase OS=Aster yellows witches'-broom phytoplasma (strain AYWB) GN=proS PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 5.527e-57
Identity = 60/113 (53.10%), Postives = 81/113 (71.68%), Query Frame = 3
Query:  573 VRPTSETIVNHMFTQWIHSYRDLPLLVNQWANVTRWEMRTKPFVRTLEFLWQEGHTAHATPEEAEKEAMQMIDIYTKFAYEHTAIPVIAGRKSKVETFAGASRTYTIEAMMGD 911
            +RPTSE + +  +++ I SYRDLP L NQW NV RWE  TKPF+R  EFLWQEGHT HAT +EA ++ + ++DIY K   +  A+P + G+K++ E FAGA  TY+IEA+M D
Sbjct:  111 IRPTSEILFSQYYSKTITSYRDLPKLYNQWCNVVRWEKTTKPFLRGKEFLWQEGHTVHATEQEAMQQTLSILDIYQKLGKDLLALPFVCGKKTETEKFAGALITYSIEALMHD 223          

HSP 2 Score: 109.768 bits (273), Expect = 5.527e-57
Identity = 48/105 (45.71%), Postives = 63/105 (60.00%), Query Frame = 2
Query:  248 RERVITPRSQDFNAWYLDVISNAELADYGPVRGTMVIRPYGYAIWEAIQDYLNVKFKETGHSNMYFPQFIPYSFIEKEASHVEGFSPELALVTIGGGKELEEKLV 562
            R + +  R  DF  WY D+   AEL  Y   +G ++  PYGYA+WE IQ +LN   ++TGH N+YFP   P     KE  H++GFSPE A++T  G K L EKLV
Sbjct:    6 RVKTVATRLSDFGKWYTDICLKAELIAYSEAKGFIIYLPYGYALWENIQKHLNCTLQKTGHQNVYFPLVFPEKLFHKEKEHIQGFSPEAAMITTTGKKNLSEKLV 110          
BLAST of FC877936 vs. ExPASy Swiss-Prot
Match: SYP_NATPD (Prolyl-tRNA synthetase OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=proS PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 7.839e-56
Identity = 64/114 (56.14%), Postives = 76/114 (66.67%), Query Frame = 3
Query:  573 VRPTSETIVNHMFTQWIHSYRDLPLLVNQWANVTRWEM-RTKPFVRTLEFLWQEGHTAHATPEEAEKEAMQMIDIYTKFAYEHTAIPVIAGRKSKVETFAGASRTYTIEAMMGD 911
            VRPTSE+I+     +W+ SYRDLPL VNQW +V RWE   TKPF RT EFLWQEGHTAHAT E A  E M  ++ Y +   E  AIP + GRK + + F GA  T TIEA+M D
Sbjct:  110 VRPTSESIITPFIAEWVRSYRDLPLRVNQWCSVVRWEATETKPFFRTKEFLWQEGHTAHATEESAWDETMTRLEQYERLYEEVMAIPGMTGRKPEHDKFPGADTTTTIEALMPD 223          

HSP 2 Score: 110.538 bits (275), Expect = 7.839e-56
Identity = 51/90 (56.67%), Postives = 65/90 (72.22%), Query Frame = 2
Query:  290 WYLDVISNAELADYGPVRGTMVIRPYGYAIWEAIQDYLNVKFKETGHSNMYFPQFIPYSFIEKEASHVEGFSPELALVTIGGGKELEEKL 559
            WY +V+  A LADY P+ G +V RP GYA+WE +QD+L+  FKETG  N YFP FIP S++E+E   V+GF PE+A VT GG  ELEE+L
Sbjct:   19 WYAEVVQKAGLADYAPMGGFIVTRPRGYALWERLQDHLDGWFKETGVQNTYFPMFIPESYLEREKDIVDGFDPEVAWVTHGGHDELEERL 108          
BLAST of FC877936 vs. ExPASy Swiss-Prot
Match: SYP_PHYAS (Prolyl-tRNA synthetase OS=Phytoplasma australiense GN=proS PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 1.737e-55
Identity = 60/113 (53.10%), Postives = 77/113 (68.14%), Query Frame = 3
Query:  573 VRPTSETIVNHMFTQWIHSYRDLPLLVNQWANVTRWEMRTKPFVRTLEFLWQEGHTAHATPEEAEKEAMQMIDIYTKFAYEHTAIPVIAGRKSKVETFAGASRTYTIEAMMGD 911
            +RPTSE + +  + + I SYRDLP L NQ+ NV RWE  TKPF+R  EFLWQEGHT HAT +EA  + +  I +Y K   E  A+P + GRK++ E FAGA  TY+IEA+M D
Sbjct:  111 IRPTSEVLFSQYYAKIISSYRDLPKLYNQFCNVVRWEKATKPFLRGKEFLWQEGHTVHATEKEALDQTLFAIQLYEKLGKELLALPFVCGRKTEKEKFAGALITYSIEALMQD 223          

HSP 2 Score: 112.849 bits (281), Expect = 1.737e-55
Identity = 51/105 (48.57%), Postives = 66/105 (62.86%), Query Frame = 2
Query:  248 RERVITPRSQDFNAWYLDVISNAELADYGPVRGTMVIRPYGYAIWEAIQDYLNVKFKETGHSNMYFPQFIPYSFIEKEASHVEGFSPELALVTIGGGKELEEKLV 562
            R   +T    DF  WY D+   AEL  Y  V+G ++  PYGYA+WE IQ YLN +F++TGH N+YFP        +KE  H++GFSPE A++T  G KEL EKLV
Sbjct:    6 RVEKVTSHLSDFGQWYTDICLKAELIAYSDVKGFIIYLPYGYALWENIQKYLNYEFQKTGHQNVYFPLVFSEKLFQKEKDHIQGFSPEAAMITSTGQKELFEKLV 110          
BLAST of FC877936 vs. ExPASy Swiss-Prot
Match: SYP_HALLT (Prolyl-tRNA synthetase OS=Halorubrum lacusprofundi (strain ATCC 49239 / DSM 5036 / JCM 8891 / ACAM 34) GN=proS PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 8.524e-55
Identity = 62/114 (54.39%), Postives = 77/114 (67.54%), Query Frame = 3
Query:  573 VRPTSETIVNHMFTQWIHSYRDLPLLVNQWANVTRWEM-RTKPFVRTLEFLWQEGHTAHATPEEAEKEAMQMIDIYTKFAYEHTAIPVIAGRKSKVETFAGASRTYTIEAMMGD 911
            VRPTSE+I+    +QW+ S+RDLPL VNQW +V RWE   TKPF RT EFLWQEGHTAHAT E A +E M  +D Y     +  A+PV+ G+K   + F GA  T T+EA+M D
Sbjct:  114 VRPTSESIITPYISQWVRSHRDLPLRVNQWCSVVRWEATETKPFFRTKEFLWQEGHTAHATHEGAWEETMTRLDQYASVYEDLLAMPVLKGQKPDHDKFPGAETTTTVEALMPD 227          

HSP 2 Score: 109.768 bits (273), Expect = 8.524e-55
Identity = 52/99 (52.53%), Postives = 68/99 (68.69%), Query Frame = 2
Query:  269 RSQDFNAWYLDVISNAELADYGP--VRGTMVIRPYGYAIWEAIQDYLNVKFKETGHSNMYFPQFIPYSFIEKEASHVEGFSPELALVTIGGGKELEEKL 559
            +S +   WY +V+  A LADYGP  + G +V RP  YA+WE +Q +L+ KFK+TG  N YFP FIP S++E+E   VEGF PE+A VT  G KELEE+L
Sbjct:   14 KSHNTGEWYAEVVQKAGLADYGPEGMSGFIVTRPRAYAVWERLQGFLDAKFKDTGVQNAYFPLFIPESYLEREKDIVEGFDPEVAWVTEAGNKELEERL 112          
BLAST of FC877936 vs. ExPASy Swiss-Prot
Match: SYP_MYCPU (Prolyl-tRNA synthetase OS=Mycoplasma pulmonis GN=proS PE=3 SV=2)

HSP 1 Score: 126.716 bits (317), Expect = 1.575e-53
Identity = 62/124 (50.00%), Postives = 81/124 (65.32%), Query Frame = 3
Query:  540 RN*KKNLWL*QVRPTSETIVNHMFTQWIHSYRDLPLLVNQWANVTRWEMRTKPFVRTLEFLWQEGHTAHATPEEAEKEAMQMIDIYTKFAYEHTAIPVIAGRKSKVETFAGASRTYTIEAMMGD 911
            +N  +N++L   RPTSE +    F   I SY+DLP + NQWANV RWE  T PF+R+ EFLWQEGH++H +  EA K   +M+  Y KF  +  AIP I G+K+  E F+GA  TYT+EAMM D
Sbjct:  100 KNLSENIYL---RPTSEVLFQKFFKAEIESYKDLPKIYNQWANVIRWEKTTNPFLRSTEFLWQEGHSSHESAIEARKFTREMLKTYCKFLRKFLAIPTIMGKKTPREKFSGAYSTYTLEAMMKD 220          

HSP 2 Score: 105.145 bits (261), Expect = 1.575e-53
Identity = 48/100 (48.00%), Postives = 62/100 (62.00%), Query Frame = 2
Query:  260 ITPRSQDFNAWYLDVISNAELADYGPVRGTMVIRPYGYAIWEAIQDYLNVKFKETGHSNMYFPQFIPYSFIEKEASHVEGFSPELALVTIGGGKELEEKL 559
            ITP  ++F  WY DV+ N EL DYGPV+GT++ +P  Y IWE IQ   N   K  G  N+Y P  IP S ++ E  H+EGF+PELA +T  G K L E +
Sbjct:    7 ITPLEENFAKWYTDVVKNGELIDYGPVKGTLIFKPNSYGIWENIQLQFNKILKAKGIKNVYLPLLIPESLMKAEFEHIEGFAPELATLTKVGSKNLSENI 106          
BLAST of FC877936 vs. ExPASy Swiss-Prot
Match: SYP_HALSA (Prolyl-tRNA synthetase OS=Halobacterium salinarium GN=proS PE=3 SV=2)

HSP 1 Score: 122.479 bits (306), Expect = 1.007e-52
Identity = 61/114 (53.51%), Postives = 75/114 (65.79%), Query Frame = 3
Query:  573 VRPTSETIVNHMFTQWIHSYRDLPLLVNQWANVTRWEM-RTKPFVRTLEFLWQEGHTAHATPEEAEKEAMQMIDIYTKFAYEHTAIPVIAGRKSKVETFAGASRTYTIEAMMGD 911
            VRPTSE+I+    +QW+ S+RDLPL VNQW +V RWE   TKPF RT EFLWQEGHTAHAT E A  E    +D Y +   +   IPV+ GRK   + F GA  T ++EA+M D
Sbjct:  112 VRPTSESIIAPYLSQWVRSHRDLPLRVNQWNSVVRWEATETKPFFRTKEFLWQEGHTAHATDEAAWAETTLRLDQYHRLYEDVLGIPVLRGRKPDHDKFPGADTTMSVEALMPD 225          

HSP 2 Score: 106.686 bits (265), Expect = 1.007e-52
Identity = 49/90 (54.44%), Postives = 64/90 (71.11%), Query Frame = 2
Query:  290 WYLDVISNAELADYGPVRGTMVIRPYGYAIWEAIQDYLNVKFKETGHSNMYFPQFIPYSFIEKEASHVEGFSPELALVTIGGGKELEEKL 559
            WY +V+  A LADY P+ G +V RP GYA+WEAIQD L+  FK+TG  N YFP FIP  ++E+E   VEGF PE+A VT GG  +L+++L
Sbjct:   21 WYAEVVQKAGLADYAPMGGFIVTRPRGYALWEAIQDNLDGWFKDTGVENAYFPMFIPEDYLEREKDIVEGFDPEVAWVTQGGHDDLDQRL 110          
BLAST of FC877936 vs. ExPASy Swiss-Prot
Match: SYP_HALS3 (Prolyl-tRNA synthetase OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=proS PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 1.007e-52
Identity = 61/114 (53.51%), Postives = 75/114 (65.79%), Query Frame = 3
Query:  573 VRPTSETIVNHMFTQWIHSYRDLPLLVNQWANVTRWEM-RTKPFVRTLEFLWQEGHTAHATPEEAEKEAMQMIDIYTKFAYEHTAIPVIAGRKSKVETFAGASRTYTIEAMMGD 911
            VRPTSE+I+    +QW+ S+RDLPL VNQW +V RWE   TKPF RT EFLWQEGHTAHAT E A  E    +D Y +   +   IPV+ GRK   + F GA  T ++EA+M D
Sbjct:  112 VRPTSESIIAPYLSQWVRSHRDLPLRVNQWNSVVRWEATETKPFFRTKEFLWQEGHTAHATDEAAWAETTLRLDQYHRLYEDVLGIPVLRGRKPDHDKFPGADTTMSVEALMPD 225          

HSP 2 Score: 106.686 bits (265), Expect = 1.007e-52
Identity = 49/90 (54.44%), Postives = 64/90 (71.11%), Query Frame = 2
Query:  290 WYLDVISNAELADYGPVRGTMVIRPYGYAIWEAIQDYLNVKFKETGHSNMYFPQFIPYSFIEKEASHVEGFSPELALVTIGGGKELEEKL 559
            WY +V+  A LADY P+ G +V RP GYA+WEAIQD L+  FK+TG  N YFP FIP  ++E+E   VEGF PE+A VT GG  +L+++L
Sbjct:   21 WYAEVVQKAGLADYAPMGGFIVTRPRGYALWEAIQDNLDGWFKDTGVENAYFPMFIPEDYLEREKDIVEGFDPEVAWVTQGGHDDLDQRL 110          
BLAST of FC877936 vs. ExPASy Swiss-Prot
Match: SYP_HALMA (Prolyl-tRNA synthetase OS=Haloarcula marismortui GN=proS PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 1.712e-52
Identity = 59/114 (51.75%), Postives = 73/114 (64.04%), Query Frame = 3
Query:  573 VRPTSETIVNHMFTQWIHSYRDLPLLVNQWANVTRWEM-RTKPFVRTLEFLWQEGHTAHATPEEAEKEAMQMIDIYTKFAYEHTAIPVIAGRKSKVETFAGASRTYTIEAMMGD 911
            VRPTSE+I+     QW  S+RDLP+ +NQW +V RWE   TKPF RT EFLWQEGHTAHA  + A +E M  +D Y +   E  A+P + GRK   + F GA  T TIE +M D
Sbjct:  111 VRPTSESIIAPFMAQWTRSHRDLPMRLNQWCSVVRWEATETKPFFRTKEFLWQEGHTAHADEDGAWEETMTRLDQYARLYEEVMAMPPLKGRKPPHDKFPGAHTTTTIETLMPD 224          

HSP 2 Score: 109.383 bits (272), Expect = 1.712e-52
Identity = 53/90 (58.89%), Postives = 64/90 (71.11%), Query Frame = 2
Query:  290 WYLDVISNAELADYGPVRGTMVIRPYGYAIWEAIQDYLNVKFKETGHSNMYFPQFIPYSFIEKEASHVEGFSPELALVTIGGGKELEEKL 559
            WY +V+  A LADY P+ G +V RP GYAIWE IQ+ L+  FK+TG  N YFP FIP S++EKE   VEGF PE+A VT GG  ELEE+L
Sbjct:   20 WYAEVVQKAGLADYAPMGGFIVTRPRGYAIWERIQNNLDGWFKDTGVQNAYFPLFIPESYLEKEKDVVEGFDPEVAWVTHGGHNELEERL 109          
BLAST of FC877936 vs. ExPASy Swiss-Prot
Match: SYP_HALWD (Prolyl-tRNA synthetase OS=Haloquadratum walsbyi (strain DSM 16790) GN=proS PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 8.395e-52
Identity = 63/114 (55.26%), Postives = 76/114 (66.67%), Query Frame = 3
Query:  573 VRPTSETIVNHMFTQWIHSYRDLPLLVNQWANVTRWEM-RTKPFVRTLEFLWQEGHTAHATPEEAEKEAMQMIDIYTKFAYEHTAIPVIAGRKSKVETFAGASRTYTIEAMMGD 911
            VRPTSE+I+    +QWI SYRDLPL VNQW +V RWE   TKPF RT EFLWQEGHTAHAT  +A  E M  ++ Y     +  AIPV+ G K + + F GA  T T+EA+M D
Sbjct:  113 VRPTSESIIAPYLSQWIRSYRDLPLRVNQWTSVVRWEATETKPFFRTKEFLWQEGHTAHATRADAWAETMLRLNQYESTYEDLLAIPVLQGAKPEHDKFPGADTTTTVEALMPD 226          

HSP 2 Score: 101.679 bits (252), Expect = 8.395e-52
Identity = 47/92 (51.09%), Postives = 62/92 (67.39%), Query Frame = 2
Query:  290 WYLDVISNAELADYGP--VRGTMVIRPYGYAIWEAIQDYLNVKFKETGHSNMYFPQFIPYSFIEKEASHVEGFSPELALVTIGGGKELEEKL 559
            WY +V+  AELA+YGP  + G +V RP  Y +WE +Q YL+ +FK+TG  N YFP FIP  ++E+E   VEGF PE+A V   G  ELEE+L
Sbjct:   20 WYAEVVQKAELANYGPEGMSGFIVTRPRAYGLWERVQSYLDTRFKQTGVQNAYFPLFIPEGYLEREKEIVEGFDPEVAWVEQAGRNELEERL 111          
The following BLAST results are available for this feature:
BLAST of FC877936 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 162
Match NameE-valueIdentityDescription
SYP_NOVAD2.493e-5758.41Prolyl-tRNA synthetase OS=Novosphingobium aromatic... [more]
SYP_AYWBP5.527e-5753.10Prolyl-tRNA synthetase OS=Aster yellows witches'-b... [more]
SYP_NATPD7.839e-5656.14Prolyl-tRNA synthetase OS=Natronomonas pharaonis (... [more]
SYP_PHYAS1.737e-5553.10Prolyl-tRNA synthetase OS=Phytoplasma australiense... [more]
SYP_HALLT8.524e-5554.39Prolyl-tRNA synthetase OS=Halorubrum lacusprofundi... [more]
SYP_MYCPU1.575e-5350.00Prolyl-tRNA synthetase OS=Mycoplasma pulmonis GN=p... [more]
SYP_HALSA1.007e-5253.51Prolyl-tRNA synthetase OS=Halobacterium salinarium... [more]
SYP_HALS31.007e-5253.51Prolyl-tRNA synthetase OS=Halobacterium salinarum ... [more]
SYP_HALMA1.712e-5251.75Prolyl-tRNA synthetase OS=Haloarcula marismortui G... [more]
SYP_HALWD8.395e-5255.26Prolyl-tRNA synthetase OS=Haloquadratum walsbyi (s... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA44BD03RM1 IVIA1 Citrus clementina cDNA clone IC0AAA44BD03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877936 ID=FC877936; Name=FC877936; organism=Citrus clementina; type=EST; length=914bp
CTCGAAACGACAATAGGAAATGGTATCGGCTTTAAGACTCCCCTCCTTAC
ATCTCACTAATCTCTTCTCCTCCTCTCCCTGTATCTCCCGCCGGTCTTCG
GCGATTCTACGGCGTCACCATCGCCTTCGGCCTCCGCCGACTCTGACTGC
TGGATTCTCCGCTCAGAGCGCGGCGTCTAGTCCGCCGGAAACCGATGACA
AAGTCGTGGAAATCGAGAAGAACCGAGCGAGTCAAGACCGAGGCAACCGG
GAACGAGTCATCACGCCAAGGTCGCAGGACTTCAATGCTTGGTACCTCGA
TGTTATTTCCAACGCGGAGCTTGCTGATTACGGTCCGGTCCGTGGGACCA
TGGTTATTAGGCCTTACGGATACGCTATTTGGGAGGCAATTCAGGATTAT
TTGAATGTAAAGTTCAAGGAGACAGGGCACAGTAACATGTACTTCCCACA
GTTTATACCATACTCCTTCATCGAGAAAGAAGCCAGCCATGTTGAGGGAT
TCAGTCCAGAATTGGCTCTTGTAACTATTGGAGGTGGAAAGGAACTAGAA
GAAAAACTTGTGGCTGTAACAGGTTCGACCTACAAGTGAAACAATTGTAA
ATCACATGTTTACTCAGTGGATTCATAGTTATCGCGATCTTCCTCTCCTG
GTTAACCAGTGGGCAAATGTCACACGATGGGAGATGCGCACAAAACCATT
TGTGAGAACCCTTGAATTTCTATGGCAGGAGGGCCATACTGCTCATGCCA
CTCCAGAAGAGGCAGAGAAAGAGGCAATGCAGATGATTGATATTTACACA
AAGTTTGCTTATGAGCATACTGCAATACCCGTTATTGCTGGTCGAAAATC
GAAAGTGGAAACTTTTGCTGGTGCTTCAAGGACCTACACCATAGAGGCTA
TGATGGGTGATAAG
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