FC877945

Overview
NameFC877945
Unique NameFC877945
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length881
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC877945 vs. ExPASy Swiss-Prot
Match: AROB_DESRM (3-dehydroquinate synthase OS=Desulfotomaculum reducens (strain MI-1) GN=aroB PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 1.073e-22
Identity = 72/245 (29.39%), Postives = 120/245 (48.98%), Query Frame = 1
Query:   37 GEKAKSLDTFTNIVDSMTDFGIIRKEPXXXXXXXXXTDVAGFACAAYRRNTNYIRIPTTVIGLIDARVSIKVAVNYGNYKNRLGAYHAPAHTLLDFGFLRTLPEAQVRNGFAELIKISSCAHLPTFDLLDEFCERLIK---TKFGRVSDHDGEIKKAADEINRNGIFEMLKLETPNLHEIGLDRVIAYGHT-WSPLHELAPPVPLRHGHAISIDMAYSATLANDRGLLSDEEHRRLLALFSRAGL 759
            GE +K+L+  + + D   D  + R+            D+AGF  A Y R   +I+IPTT++  +D+ V  KVAVN+   KN +GA++ P   ++D   L+TLPE +++ G AE+IK         F  L++   R++    T   +V++   +IK +  E +                E G   ++ YGHT    +  L+      HG A+++ M  +A LA + G+LS ++  R+  L S  GL
Sbjct:   73 GEPSKTLEQASRLYDLAFDHALDRQSSVIALGGGVVGDLAGFVAATYMRGVPFIQIPTTLLAQVDSSVGGKVAVNHSRGKNMIGAFYQPQMVMIDVATLQTLPERELKAGLAEVIKYGVIWDGSFFTWLEKNYSRILNLDTTALEQVAETCCKIKASVVEQDE--------------REQGCRAILNYGHTVGHAIESLSGYGTYLHGEAVAMGMISAARLALNEGILSQQDFERIYRLISAVGL 303          
BLAST of FC877945 vs. ExPASy Swiss-Prot
Match: AROB_MYCLE (3-dehydroquinate synthase OS=Mycobacterium leprae GN=aroB PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.401e-22
Identity = 72/258 (27.91%), Postives = 116/258 (44.96%), Query Frame = 1
Query:    1 HRLELKIHQTMIGEKAKSLDTFTNIVDSMTDFGIIRKEPXXXXXXXXXTDVAGFACAAYRRNTNYIRIPTTVIGLIDARVSIKVAVNYGNYKNRLGAYHAPAHTLLDFGFLRTLPEAQVRNGFAELIKISSCAHLPTFDLLDEFCERLIKTKFGRVSDHDGEIKKAADEINRNGIFEMLKLETPNLHEIGLDRVIAYGHTWSPLHELAPPVPLRHGHAISIDMAYSATLANDRGLLSDEEHRRLLALFSRAGLSMDHE 774
            HR+E+        E  K L     I + +   GI RK+          TDVAGFA A + R  + + +PTT++G++DA V  K  +N    KN +GA+H P   L D   L TLP  ++ +G AE++K    A     DL++   +  +    G              E+ R  +     + + +  E  L  ++ YGHT +   E       RHG A+S+ + ++A LA   G L D   +R   + +  GL + ++
Sbjct:   67 HRIEIPD-----AEAGKDLSVMDFIWEVLGRIGIGRKDALVSFGGGAATDVAGFAAATWLRGVSIVHVPTTLLGMVDAAVGGKTGINTEAGKNLVGAFHQPLAVLADLATLETLPRKEIASGMAEVVKAGFIADPIILDLIEADPQASLDPMGG-----------VLPELIRRAVTVKAGVVSADEKESELREILNYGHTLAHAIERRERYEWRHGAAVSVGLVFAAELARVAGRLDDATAQRHHTILTSLGLPVSYD 308          
BLAST of FC877945 vs. ExPASy Swiss-Prot
Match: AROB_MYCGI (3-dehydroquinate synthase OS=Mycobacterium gilvum (strain PYR-GCK) GN=aroB PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.401e-22
Identity = 72/258 (27.91%), Postives = 118/258 (45.74%), Query Frame = 1
Query:    1 HRLELKIHQTMIGEKAKSLDTFTNIVDSMTDFGIIRKEPXXXXXXXXXTDVAGFACAAYRRNTNYIRIPTTVIGLIDARVSIKVAVNYGNYKNRLGAYHAPAHTLLDFGFLRTLPEAQVRNGFAELIKISSCAHLPTFDLLDEFCERLIKTKFGRVSDHDGEIKKAADEINRNGIFEMLKLETPNLHEIGLDRVIAYGHTWSPLHELAPPVPLRHGHAISIDMAYSATLANDRGLLSDEEHRRLLALFSRAGLSMDHE 774
            HR+E+        E  K L     I   +   G+ RK+          TDVAGFA A + R  + + +PTT++G++DA V  K  +N    KN +GA+H PA  L+D   L +LP  ++  G AE++K    A     D+++   E  +        D  G +     E+ R  +    ++   +  E  L  ++ YGHT +   E       RHG A+S+ + ++A L    G L D+   R  A+ +  GL + ++
Sbjct:   64 HRIEIPD-----AEGGKELPVVGFIWQVLGRIGVGRKDAIVSLGGGAATDVAGFAAATWLRGIDIVHVPTTLLGMVDAAVGGKTGINTDAGKNLVGAFHQPAAVLIDLATLESLPRNEIVAGMAEIVKAGFIADPVILDMIEADPEAAL--------DPSGAV---LPELIRRAVVVKAEVVAADEKESQLREILNYGHTLAHAIERRERYQWRHGAAVSVGLVFAAELGRLAGRLDDDTTERHRAILTSLGLPVTYD 305          
BLAST of FC877945 vs. ExPASy Swiss-Prot
Match: AROB_MYCPA (3-dehydroquinate synthase OS=Mycobacterium paratuberculosis GN=aroB PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.830e-22
Identity = 75/258 (29.07%), Postives = 116/258 (44.96%), Query Frame = 1
Query:    1 HRLELKIHQTMIGEKAKSLDTFTNIVDSMTDFGIIRKEPXXXXXXXXXTDVAGFACAAYRRNTNYIRIPTTVIGLIDARVSIKVAVNYGNYKNRLGAYHAPAHTLLDFGFLRTLPEAQVRNGFAELIKISSCAHLPTFDLLDEFCERLIKTKFGRVSDHDGEIKKAADEINRNGIFEMLKLETPNLHEIGLDRVIAYGHTWSPLHELAPPVPLRHGHAISIDMAYSATLANDRGLLSDEEHRRLLALFSRAGLSMDHE 774
            HR+E+        E  K L     + + +   GI RK+          TDVAGFA A + R  + + +PTT++G++DA V  K  +N    KN +GA+H P   L+D   L TLP  ++  G AE++K    A     DL++      +        D  GE+     E+ +  I     +   +  E  L  ++ YGHT     E       RHG A+S+ + ++A LA   G L D   RR   + S  GL + ++
Sbjct:   67 HRIEIPD-----AEDGKDLPVVGFLWEVLGRIGIGRKDALVSLGGGAATDVAGFAAATWLRGVDIVHVPTTLLGMVDAAVGGKTGINTDAGKNLVGAFHQPLAVLVDLATLHTLPPNELVAGMAEVVKAGFIADPAILDLIEADPRAAV--------DPSGEV---LAELVQRAIAVKADVVAADEKESELREILNYGHTLGHAIERRERYRWRHGAAVSVGLVFAAELARLAGRLDDATARRHRTILSALGLPVSYD 308          
BLAST of FC877945 vs. ExPASy Swiss-Prot
Match: AROB_ARTAT (3-dehydroquinate synthase OS=Arthrobacter aurescens (strain TC1) GN=aroB PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.830e-22
Identity = 66/209 (31.58%), Postives = 106/209 (50.72%), Query Frame = 1
Query:  145 TDVAGFACAAYRRNTNYIRIPTTVIGLIDARVSIKVAVNYGNYKNRLGAYHAPAHTLLDFGFLRTLPEAQVRNGFAELIKISSCAHLPTFDLLDEFCERLIKTKFGRVSDHDGEIKKAADEINRNGIFEMLKLETPNLHEIGLDRVIAYGHTWSPLHELAPPVPLRHGHAISIDMAYSATLANDRGLLSDEEHRRLLALFSRAGLSMDH 771
            TD+AGF  A + R    I +PT+++G++DA V  K  +N    KN +G++H PA  L D   L+TLP+ ++ +G AE+IK   C  +    +LD     L++     V D   ++ +   E+    I     + + +L E GL  ++ YGHT     EL      RHG A+S+ M ++A L+   G LSD +  R   +    GL + +
Sbjct:  112 TDLAGFVAATWLRGVKVIHMPTSLLGMVDASVGGKTGINTAEGKNLVGSFHPPAAVLADLDTLQTLPKNELISGMAEVIK---CGFIADPAILD-----LVEKNTDAVMDPGSDVVR---ELIERAISVKADVVSQDLKESGLREILNYGHTLGHAIELVERYSWRHGAAVSVGMMFAAELSRSVGRLSDADADRHRTILESLGLPITY 309          
BLAST of FC877945 vs. ExPASy Swiss-Prot
Match: AROB_ALISL (3-dehydroquinate synthase OS=Aliivibrio salmonicida (strain LFI1238) GN=aroB PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 3.121e-22
Identity = 75/248 (30.24%), Postives = 119/248 (47.98%), Query Frame = 1
Query:   37 GEKAKSLDTFTNIVDSMTDFGIIRKEPXXXXXXXXXTDVAGFACAAYRRNTNYIRIPTTVIGLIDARVSIKVAVNYGNYKNRLGAYHAPAHTLLDFGFLRTLPEAQVRNGFAELIKISSCAHLPTFDLLDEFCERLIKTKFGRVSDHDGEIKKAAD--EINRNGIFEMLKLETPNLHEIGLDRVIAYGHTWSPLHELAPPVPL---RHGHAISIDMAYSATLANDRGLLSDEEHRRLLALFSRAGLSM 765
            GE+ K+LDTF  I+  + +    R             DV GFA A Y+R  ++I++PTT++  +D+ V  K A+N+   KN +GA++ P   ++D   L+TLPE +   G AE+IK         FD LDE  E+L         DHD  +   +   +I  + + +  K       E G+  ++  GHT+   H +   +      HG A+S     +A  A   GL+S +E  R+ AL  +A L +
Sbjct:   73 GEQYKNLDTFNQILTFLLEENHSRDVTIVALGGGVVGDVVGFASACYQRGVDFIQVPTTLLSQVDSSVGGKTAINHPLGKNMVGAFYQPKAVIIDINCLKTLPEREFAAGMAEVIKYGIIIDSDFFDWLDENMEKLY------ALDHDALVYAISRCCQIKADVVAKDEK-------ESGVRALLNLGHTFG--HAIEAEMGYGNWLHGEAVSAGTVMAAVTAQKEGLISQQEVDRICALLKKAKLPL 305          
BLAST of FC877945 vs. ExPASy Swiss-Prot
Match: AROB_SULSO (3-dehydroquinate synthase OS=Sulfolobus solfataricus GN=aroB PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 4.076e-22
Identity = 69/245 (28.16%), Postives = 113/245 (46.12%), Query Frame = 1
Query:   37 GEKAKSLDTFTNIVDSMTDFGIIRKEPXXXXXXXXXTDVAGFACAAYRRNTNYIRIPTTVIGLIDARVSIKVAVNYGNYKNRLGAYHAPAHTLLDFGFLRTLPEAQVRNGFAELIKISSCAHLPTFDLLDEFCERLIKTKFGRVSDHDGEIKKAADEINRNGIFEMLKLETPNLHEI-GLDRVIAYGHTWSPLHELAPPVPLRHGHAISIDMAYSATLANDRGLLSDEEHRRLLALFSRAGLSMD 768
            GE  K L +  ++V+ + +    R +          TDVAGF  + Y R  N I +PTT +G++DA +  K  VN+ N KN +G ++ P+  + D  FL TLP  +++ G AE+IK         +D L    E+++            + K+A ++I      + L +   +  E  G+  V+ +GHT     E      + HG+AIS+ M   A +A + G   +     +L L    GL  D
Sbjct:   62 GESTKELSSVISLVEKLFEKNFDRGDYIIGVGGGTVTDVAGFLASIYLRGLNLINVPTTFLGMVDAAIGGKNGVNFNNIKNLIGTFYQPSMIISDLEFLETLPIEELKKGLAEVIKYGLTLDKELYDYLSLNKEKIL-----------NKDKQALEDIIFRSTLDKLSIVKEDERETKGIRIVLNFGHTIGHAIEAGSSFNVPHGYAISVGMVCEAKMAEELGYAEEGVVEDVLWLLQIYGLPYD 295          
BLAST of FC877945 vs. ExPASy Swiss-Prot
Match: AROB_THETN (3-dehydroquinate synthase OS=Thermoanaerobacter tengcongensis GN=aroB PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 5.324e-22
Identity = 72/247 (29.15%), Postives = 117/247 (47.37%), Query Frame = 1
Query:   37 GEKAKSLDTFTNIVDSMTDFGIIRKEPXXXXXXXXXTDVAGFACAAYRRNTNYIRIPTTVIGLIDARVSIKVAVNYGNYKNRLGAYHAPAHTLLDFGFLRTLPEAQVRNGFAELIKISSCAHLPTFDLLDEFCERLIKTKFGRVSDHDGEIKKAADEINRNGIFEMLKLETPNLHEIGLDRVIAYGHT-WSPLHELAPPVPLRHGHAISIDMAYSATLANDRGLLSDEEHRRLLALFSRAGLSMDHE 774
            GE +K+++    +++   D G++R             D+AGF  A Y R  ++I+IPTT++  +D+ V  KVAVN    KN +GA++ P    +D   L TL + +V  G AE+IK         F  ++E    +++ K           K+    I +       K+ + +  E  L  ++ +GHT    +  L       HG A++I MAY A LA + G + +    R+L L  RAGL  D+E
Sbjct:   73 GETSKTMEMAQRLLEVAYDSGLLRDSSIIALGGGVVGDIAGFVAATYMRGIDFIQIPTTLLAQVDSSVGGKVAVNLKKGKNIVGAFYQPKMVYIDTSVLGTLNKREVLGGLAEVIKYGVIWDFDLFTYIEENLGDILRLK-----------KEDLTYIVKRSCEIKAKVVSLDEKEENLRAILNFGHTIGHAIEALTGYERYIHGEAVAIGMAYEARLAFNLGYIDEGYLERILNLIKRAGLPADYE 308          
BLAST of FC877945 vs. ExPASy Swiss-Prot
Match: AROB_MYCVP (3-dehydroquinate synthase OS=Mycobacterium vanbaalenii (strain DSM 7251 / PYR-1) GN=aroB PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 5.324e-22
Identity = 71/258 (27.52%), Postives = 118/258 (45.74%), Query Frame = 1
Query:    1 HRLELKIHQTMIGEKAKSLDTFTNIVDSMTDFGIIRKEPXXXXXXXXXTDVAGFACAAYRRNTNYIRIPTTVIGLIDARVSIKVAVNYGNYKNRLGAYHAPAHTLLDFGFLRTLPEAQVRNGFAELIKISSCAHLPTFDLLDEFCERLIKTKFGRVSDHDGEIKKAADEINRNGIFEMLKLETPNLHEIGLDRVIAYGHTWSPLHELAPPVPLRHGHAISIDMAYSATLANDRGLLSDEEHRRLLALFSRAGLSMDHE 774
            HR+E+        E  K L     I + +   G+ RK+          TDVAGFA A + R  + + +PTT++G++DA V  K  +N    KN +GA+H PA  L+D   L +LP  ++  G AE++K    A     D+++   +  +        D  G++     E+ R  +    ++   +  E  L  ++ YGHT +   E       RHG A+S+ + ++A L    G L D    R  A+    GL + ++
Sbjct:   64 HRIEIPD-----AEGGKELPVVGFIWEVLGRIGLGRKDAIVSLGGGAATDVAGFAAATWLRGVDIVHVPTTLLGMVDAAVGGKTGINTDAGKNLVGAFHQPAAVLIDLATLESLPRNEIVAGMAEIVKAGFIADPVILDMIEADPQAAL--------DPTGQV---LPELIRRAVVVKAEVVAADEKESQLREILNYGHTLAHAIERRERYQWRHGAAVSVGLVFAAELGRLAGRLDDATAERHRAILISLGLPVTYD 305          
BLAST of FC877945 vs. ExPASy Swiss-Prot
Match: AROB_CHLP8 (3-dehydroquinate synthase OS=Chlorobaculum parvum (strain NCIB 8327) GN=aroB PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 6.953e-22
Identity = 69/238 (28.99%), Postives = 118/238 (49.58%), Query Frame = 1
Query:   40 EKAKSLDTFTNIVDSMTDFGIIRKEPXXXXXXXXXTDVAGFACAAYRRNTNYIRIPTTVIGLIDARVSIKVAVNYGNYKNRLGAYHAPAHTLLDFGFLRTLPEAQVRNGFAELIKISSCAHLPTFDLLDEFCERLIKTKFGRVSDHDGEIKKAADEINRNGIFEMLKLETPNLHEIGLDRVIAYGHTWS-PLHELAPPVPLRHGHAISIDMAYSATLANDRGLLSDEEHRRLLALFSR 750
            E +KS+ T   +   M +  + R             D+ G+  A+Y R    +++PTT++ + D+ +  KVA+N+   KN +G +H PA  L+D  FLRTLP  ++  G AE++K    A    FD+L E  + + + +   +S          D ++R+   +   +E       GL   + +GHT++  L ++A    LRHG A++I MA +  L+   G L++ E    LAL +R
Sbjct:   67 ETSKSVSTAWKLYGQMIETDVDRSWNLLCVGGGVVGDLGGYIAASYYRGIPVVQLPTTLLAMTDSSIGGKVAINHPLGKNLIGYFHMPALVLIDPAFLRTLPAREIFGGMAEVVKYGFIADRKFFDMLAEHWDEVTRLEEPWIS----------DAVSRSAFTKADVVEKDFRETSGLRATLNFGHTFAHGLEKMAEYRNLRHGEAVTIGMACALYLSYRLGFLAEAELNEGLALIAR 294          
The following BLAST results are available for this feature:
BLAST of FC877945 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
AROB_DESRM1.073e-2229.393-dehydroquinate synthase OS=Desulfotomaculum redu... [more]
AROB_MYCLE1.401e-2227.913-dehydroquinate synthase OS=Mycobacterium leprae ... [more]
AROB_MYCGI1.401e-2227.913-dehydroquinate synthase OS=Mycobacterium gilvum ... [more]
AROB_MYCPA1.830e-2229.073-dehydroquinate synthase OS=Mycobacterium paratub... [more]
AROB_ARTAT1.830e-2231.583-dehydroquinate synthase OS=Arthrobacter aurescen... [more]
AROB_ALISL3.121e-2230.243-dehydroquinate synthase OS=Aliivibrio salmonicid... [more]
AROB_SULSO4.076e-2228.163-dehydroquinate synthase OS=Sulfolobus solfataric... [more]
AROB_THETN5.324e-2229.153-dehydroquinate synthase OS=Thermoanaerobacter te... [more]
AROB_MYCVP5.324e-2227.523-dehydroquinate synthase OS=Mycobacterium vanbaal... [more]
AROB_CHLP86.953e-2228.993-dehydroquinate synthase OS=Chlorobaculum parvum ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionIC0AAA78AH03RM1 IVIA1 Citrus clementina cDNA clone IC0AAA78AH03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877945 ID=FC877945; Name=FC877945; organism=Citrus clementina; type=EST; length=881bp
CACCGTCTTGAATTGAAGATTCACCAGACAATGATCGGAGAGAAGGCCAA
GTCCTTGGATACGTTTACCAACATTGTGGACTCCATGACTGATTTTGGAA
TCATTCGGAAAGAGCCTGTTTTGGTTGTGGGCGGAGGACTAGTCACCGAC
GTTGCAGGATTTGCCTGCGCCGCCTATCGCCGCAACACCAATTACATCCG
TATCCCCACAACCGTTATTGGCCTGATCGACGCCCGTGTCAGTATCAAAG
TCGCTGTCAACTACGGCAACTACAAGAACCGACTCGGTGCCTACCATGCA
CCCGCGCACACCCTTCTTGATTTTGGTTTCTTGAGAACCTTGCCCGAGGC
TCAAGTTCGCAACGGGTTTGCCGAGCTCATCAAGATTTCGAGCTGTGCTC
ACTTGCCGACATTTGACTTGTTGGATGAGTTCTGTGAGCGGCTCATCAAG
ACCAAATTCGGGCGTGTCTCCGACCACGATGGAGAGATCAAGAAAGCTGC
CGACGAGATCAACCGGAACGGGATCTTTGAGATGTTGAAGCTCGAAACGC
CGAATCTGCATGAGATCGGCCTGGACCGAGTGATTGCGTATGGCCACACT
TGGTCGCCCCTTCACGAGCTCGCGCCCCCAGTTCCACTTCGCCACGGCCA
TGCCATTTCAATAGATATGGCTTATTCTGCCACTTTGGCGAATGACCGTG
GCCTTCTCAGTGATGAAGAGCACCGGAGATTGTTGGCTCTCTTTTCTCGT
GCAGGCCTCTCCATGGATCACGAACTTTTCTACGAAGAAATTCTGGATAA
AGCCACACAGTCATTTTGAGACCCGAGACGGGCTCTTGCGTGCAGCTGTG
CCAAGTCCACTAGGCAGCTGCAAGTTCTTGA
back to top