FC877945

Overview
NameFC877945
Unique NameFC877945
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length881
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC877945 vs. ExPASy Swiss-Prot
Match: AROB_PROM9 (3-dehydroquinate synthase OS=Prochlorococcus marinus (strain MIT 9312) GN=aroB PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 4.507e-21
Identity = 72/244 (29.51%), Postives = 120/244 (49.18%), Query Frame = 1
Query:    1 HRLELKIHQTMIGEKAKSLDTFTNIVDSMTDFGIIRKEPXXXXXXXXXTDVAGFACAAYRRNTNYIRIPTTVIGLIDARVSIKVAVNYGNYKNRLGAYHAPAHTLLDFGFLRTLPEAQVRNGFAELIKISSCAHLPTFDLLDEFCERLIKTKFGRVSDHDGEIKKAADEINRNGIFEMLKLETPNLHEIGLDRVIAYGHTWSPLHE-LAPPVPLRHGHAISIDMAYSATLANDRGLLSDEEHRR 729
            ++ ++++     GE  K+L T + I D   +FG+ R             DV+GFA A + R   YI+IPTT++ ++D+ V  K  VN+   KN +GA++ P    +D   L++LP+ +   G AE+IK         F+ L+     + K K   ++  +  + K    I  + I     + + + HE G+  ++ YGH++  + E L       HG AISI M  +  +A D+GL S EE  R
Sbjct:   65 NKFQVQMFLIKAGESYKNLKTLSEIYDVAFEFGLDRNSIIIALGGGIVGDVSGFAAATWLRGIEYIQIPTTLLSMVDSSVGGKTGVNHPKGKNLIGAFNQPKAVFIDPETLKSLPKREFSAGMAEVIKYGVIRDKELFEYLE-----IEKNKNELINLKNEYLIK----IINSSIKTKSYIVSQDEHENGVRAILNYGHSFGHVIENLCGYGKFLHGEAISIGMNIAGEIAIDKGLWSKEELER 299          
BLAST of FC877945 vs. ExPASy Swiss-Prot
Match: AROB_PROMS (3-dehydroquinate synthase OS=Prochlorococcus marinus (strain AS9601) GN=aroB PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 5.886e-21
Identity = 72/244 (29.51%), Postives = 119/244 (48.77%), Query Frame = 1
Query:    1 HRLELKIHQTMIGEKAKSLDTFTNIVDSMTDFGIIRKEPXXXXXXXXXTDVAGFACAAYRRNTNYIRIPTTVIGLIDARVSIKVAVNYGNYKNRLGAYHAPAHTLLDFGFLRTLPEAQVRNGFAELIKISSCAHLPTFDLLDEFCERLIKTKFGRVSDHDGEIKKAADEINRNGIFEMLKLETPNLHEIGLDRVIAYGHTWSPLHE-LAPPVPLRHGHAISIDMAYSATLANDRGLLSDEEHRR 729
            ++ + K+     GE  K+L T + I D   +FG+ R             DV+GFA A + R   YI+IPTT++ ++D+ V  K  VN+   KN +GA++ P    +D   L++LP+ +   G AE+IK         F+ L+     + K K   ++  +  + K    I  + I     + + + HE G+  ++ YGH++  + E L       HG AISI M  +  +A ++GL S EE  R
Sbjct:   65 NKFQAKMFLIKAGESYKNLKTLSEIYDVAFEFGLDRNSIIIALGGGIVGDVSGFAAATWLRGIEYIQIPTTLLSMVDSSVGGKTGVNHPKGKNLIGAFNQPKAVFIDPETLKSLPKREFSAGMAEVIKYGVIRDKELFEYLE-----IEKNKNELINLKNEYLIK----IINSSIKTKSNVVSQDEHENGVRAILNYGHSFGHVIENLCGYGKFLHGEAISIGMNIAGKIAIEKGLWSKEELER 299          
BLAST of FC877945 vs. ExPASy Swiss-Prot
Match: AROB_PROM2 (3-dehydroquinate synthase OS=Prochlorococcus marinus (strain MIT 9215) GN=aroB PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 5.886e-21
Identity = 73/246 (29.67%), Postives = 117/246 (47.56%), Query Frame = 1
Query:    1 HRLELKIHQTMIGEKAKSLDTFTNIVDSMTDFGIIRKEPXXXXXXXXXTDVAGFACAAYRRNTNYIRIPTTVIGLIDARVSIKVAVNYGNYKNRLGAYHAPAHTLLDFGFLRTLPEAQVRNGFAELIKISSCAHLPTFDLL--DEFCERLIKTKFGRVSDHDGEIKKAADEINRNGIFEMLKLETPNLHEIGLDRVIAYGHTWSPLHE-LAPPVPLRHGHAISIDMAYSATLANDRGLLSDEEHRR 729
            ++ + K+     GE  K+L T + I D   +FG+ R             DV+GFA A + R   YI+IPTT++ ++D+ V  K  VN+   KN +GA++ P    +D   L++LP+ +   G AE+IK         F+ L  D+    LI  K            +   +I  + I     + + + HE G+  ++ YGH++  + E L       HG AISI M  +  +A ++GL S EE  R
Sbjct:   65 NKFQAKMFLIKAGESYKNLKTLSEIYDVAFEFGLDRNSIIIALGGGIVGDVSGFAAATWLRGIEYIQIPTTLLSMVDSSVGGKTGVNHPKGKNLIGAFNQPKAVFIDPETLKSLPKREFSAGMAEVIKYGVIRDKELFEYLEIDKNKNELINLK-----------NEYLIKIINSSIKTKSHVVSQDEHENGVRAILNYGHSFGHVIENLCGYGKFLHGEAISIGMNIAGKIAIEKGLWSKEELER 299          
BLAST of FC877945 vs. ExPASy Swiss-Prot
Match: AROB_PHOPR (3-dehydroquinate synthase OS=Photobacterium profundum GN=aroB PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 5.886e-21
Identity = 76/275 (27.64%), Postives = 133/275 (48.36%), Query Frame = 1
Query:   10 ELKIHQTMIGEKAKSLDTFTNIVDSMTDFGIIRKEPXXXXXXXXXTDVAGFACAAYRRNTNYIRIPTTVIGLIDARVSIKVAVNYGNYKNRLGAYHAPAHTLLDFGFLRTLPEAQVRNGFAELIKISSCAHLPTFDLLDEFCERL-------IKTKFGRVSDHDGEIKKAADEINRNGIFEMLKLETPNLHEIGLDRVIAYGHTWSPLHELAPPVPLRHGHAISIDMAYSATLANDRGLLSDEEHRRLLALFSRAGL------SMDHELFYEEIL 795
            E+ + +   GE+ K+L+TF  I+  +      R             DV GFA A+Y+R  +++++PTT++  +D+ V  K AVN+   KN +GA++ P   ++D   L+TLP  +  +G AE+IK    A    F  L++  E+L       +    GR      ++   A +   +G+  +L L     H I  +  + YG+ W             HG A++    ++A  A+++GLLS+E+  R+  L  RA L      SMD++ F + ++
Sbjct:   64 EVSLLELPDGEQYKTLETFNQIMTFLLQGNYGRDVVMVALGGGVIGDVVGFAAASYQRGVDFVQVPTTLLSQVDSSVGGKTAVNHPLGKNMIGAFYQPKAVVIDNQCLKTLPAREFASGMAEVIKYGIIADYEFFVWLEQNIEKLQALDNEALCYAIGRCCQIKADV--VASDEKESGVRALLNLGHTFGHAI--EAEMGYGN-W------------LHGEAVAAGTVFAAKTAHEQGLLSEEDVIRITRLHERAQLPISKPTSMDYDSFIKHMM 321          
BLAST of FC877945 vs. ExPASy Swiss-Prot
Match: AROB_COXBU (3-dehydroquinate synthase OS=Coxiella burnetii GN=aroB PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 5.886e-21
Identity = 72/247 (29.15%), Postives = 118/247 (47.77%), Query Frame = 1
Query:   37 GEKAKSLDTFTNIVDSMTDFGIIRKEPXXXXXXXXXTDVAGFACAAYRRNTNYIRIPTTVIGLIDARVSIKVAVNYGNYKNRLGAYHAPAHTLLDFGFLRTLPEAQVRNGFAELIKISSCAHLPTFDLLDEFCERLIKTKF---GRVSDHDGEIKK---AADEINRNGIFEMLKLETPNLHEIGLDRVIAYGHTWSPLHELAPPVPLRHGHAISIDMAYSATLANDRGLLSDEEHRRLLALFSRAGL 759
            GE+ K+L+ + +I+  +      R             D+ GFA A Y+R  ++I++PTT++  +DA +  K AVN+   KN +GA+H P   ++D   L TLPE + + G AE++K +       F  L+     L++  F     V     EIK+    ADE  R+G   +L L     H I  +R++ YG  W             HG A+S  +  +A L++ + LL  E  +R+  L ++  L
Sbjct:   72 GEQYKTLEYWEHILHKLASCNHHRDTTLIALGGGVVGDITGFAAACYQRGVDFIQVPTTLLAQVDASIGGKTAVNHPVGKNLIGAFHQPKAVIIDLNTLNTLPEREFKAGMAEIVKAALIKDEKFFTDLENKMSDLLQRNFIFLQAVIKRAAEIKRDIVNADEKERSGERALLNLGHTFAHAI--ERLLGYGQ-W------------LHGEAVSAGLVLAAQLSHRKNLLDFESLQRICRLLTQISL 303          
BLAST of FC877945 vs. ExPASy Swiss-Prot
Match: AROB_COXBR (3-dehydroquinate synthase OS=Coxiella burnetii (strain RSA 331 / Henzerling II) GN=aroB PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 5.886e-21
Identity = 72/247 (29.15%), Postives = 118/247 (47.77%), Query Frame = 1
Query:   37 GEKAKSLDTFTNIVDSMTDFGIIRKEPXXXXXXXXXTDVAGFACAAYRRNTNYIRIPTTVIGLIDARVSIKVAVNYGNYKNRLGAYHAPAHTLLDFGFLRTLPEAQVRNGFAELIKISSCAHLPTFDLLDEFCERLIKTKF---GRVSDHDGEIKK---AADEINRNGIFEMLKLETPNLHEIGLDRVIAYGHTWSPLHELAPPVPLRHGHAISIDMAYSATLANDRGLLSDEEHRRLLALFSRAGL 759
            GE+ K+L+ + +I+  +      R             D+ GFA A Y+R  ++I++PTT++  +DA +  K AVN+   KN +GA+H P   ++D   L TLPE + + G AE++K +       F  L+     L++  F     V     EIK+    ADE  R+G   +L L     H I  +R++ YG  W             HG A+S  +  +A L++ + LL  E  +R+  L ++  L
Sbjct:   72 GEQYKTLEYWEHILHKLASCNHHRDTTLIALGGGVVGDITGFAAACYQRGVDFIQVPTTLLAQVDASIGGKTAVNHPVGKNLIGAFHQPKAVIIDLNTLNTLPEREFKAGMAEIVKAALIKDEKFFTDLENKMSDLLQRNFIFLQAVIKRAAEIKRDIVNADEKERSGERALLNLGHTFAHAI--ERLLGYGQ-W------------LHGEAVSAGLVLAAQLSHRKNLLDFESLQRICRLLTQISL 303          
BLAST of FC877945 vs. ExPASy Swiss-Prot
Match: AROB_COXB2 (3-dehydroquinate synthase OS=Coxiella burnetii (strain CbuG_Q212) GN=aroB PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 5.886e-21
Identity = 72/247 (29.15%), Postives = 117/247 (47.37%), Query Frame = 1
Query:   37 GEKAKSLDTFTNIVDSMTDFGIIRKEPXXXXXXXXXTDVAGFACAAYRRNTNYIRIPTTVIGLIDARVSIKVAVNYGNYKNRLGAYHAPAHTLLDFGFLRTLPEAQVRNGFAELIKISSCAHLPTFDLLDEFCERLIKTKF---GRVSDHDGEIKK---AADEINRNGIFEMLKLETPNLHEIGLDRVIAYGHTWSPLHELAPPVPLRHGHAISIDMAYSATLANDRGLLSDEEHRRLLALFSRAGL 759
            GE+ K+L+ +  I+  +      R             D+ GFA A Y+R  ++I++PTT++  +DA +  K AVN+   KN +GA+H P   ++D   L TLPE + + G AE++K +       F  L+     L++  F     V     EIK+    ADE  R+G   +L L     H I  +R++ YG  W             HG A+S  +  +A L++ + LL  E  +R+  L ++  L
Sbjct:   72 GEQYKTLEYWERILHKLASCNHHRDTTLIALGGGVVGDITGFAAACYQRGVDFIQVPTTLLAQVDASIGGKTAVNHPVGKNLIGAFHQPKAVIIDLNTLNTLPEREFKAGMAEIVKAALIKDEKFFTDLENKMSALLQRNFIFLQAVIKRAAEIKRDIVNADEKERSGERTLLNLGHTFAHAI--ERLLGYGQ-W------------LHGEAVSAGLVLAAQLSHRKNLLDFESLQRICRLLTQISL 303          
BLAST of FC877945 vs. ExPASy Swiss-Prot
Match: AROB_VIBPA (3-dehydroquinate synthase OS=Vibrio parahaemolyticus GN=aroB PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 7.688e-21
Identity = 75/248 (30.24%), Postives = 117/248 (47.18%), Query Frame = 1
Query:   37 GEKAKSLDTFTNIVDSMTDFGIIRKEPXXXXXXXXXTDVAGFACAAYRRNTNYIRIPTTVIGLIDARVSIKVAVNYGNYKNRLGAYHAPAHTLLDFGFLRTLPEAQVRNGFAELIKISSCAHLPTFDLLDEFCERL-------IKTKFGRVSDHDGEIKKAADEINRNGIFEMLKLETPNLHEIGLDRVIAYGHTWSPLHELAPPVPLRHGHAISIDMAYSATLANDRGLLSDEEHRRLLALFSRAGL 759
            GE+ K+LD F  +++ + +    R             D+ GFA A Y+R  ++I+IPTT++  +D+ V  K AVN+   KN +GA++ P   ++D   L TLPE +   G AE+IK         FD L+E  +RL       +     R      E+   A +   +GI  +L L     H I  +  + YG+ W             HG A+S     +A  +  RGL+S+E+  R++AL  RA L
Sbjct:   76 GEQYKNLDVFNQVMNFLLEGSYARDVVIIALGGGVIGDLVGFASACYQRGVDFIQIPTTLLSQVDSSVGGKTAVNHPLGKNMIGAFYQPKAVIIDTNCLSTLPEREFAAGIAEVIKYGIIYDGAFFDWLEENLDRLYTLDEDALTYAIARCCQIKAEV--VAQDEKESGIRALLNLGHTFGHAI--EAELGYGN-W------------LHGEAVSSGTVMAAKTSLLRGLISEEQFERIVALLRRAKL 306          
BLAST of FC877945 vs. ExPASy Swiss-Prot
Match: AROB_STRAW (3-dehydroquinate synthase OS=Streptomyces avermitilis GN=aroB PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 7.688e-21
Identity = 70/244 (28.69%), Postives = 113/244 (46.31%), Query Frame = 1
Query:   40 EKAKSLDTFTNIVDSMTDFGIIRKEPXXXXXXXXXTDVAGFACAAYRRNTNYIRIPTTVIGLIDARVSIKVAVNYGNYKNRLGAYHAPAHTLLDFGFLRTLPEAQVRNGFAELIKISSCAHLPTFDLLDEFCERLIKTKFGRVSDHDGEIKKAADEINRNGIFEMLKLETPNLHEIGLDRVIAYGHTWSPLHELAPPVPLRHGHAISIDMAYSATLANDRGLLSDEEHRRLLALFSRAGLSMDH 771
            E+AK+++       ++   G  R +          TD+AGF  A + R   +I +PTTV+G++DA V  K  +N    KN +GA+H PA  L D   L +LP     +G AE+IK    A     +L+ E   +  +T  G    H  E+ + + ++         ++ + +L E GL  ++ YGHT +   E       RHG A+S+ M ++A L    G L D    R   +    GL + +
Sbjct:   77 EEAKTVEVAAYCWKALGQSGFTRTDVIVGVGGGATTDLAGFVAATWLRGVRWIAVPTTVLGMVDAAVGGKTGINTAEGKNLVGAFHPPAGVLCDLAALDSLPVNDYVSGLAEIIKAGFIADPAILELI-EADPQAARTPAG---PHTAELIERSIKVK-------AEVVSGDLKESGLREILNYGHTLAHAIEKNERYKWRHGAAVSVGMHFAAELGRLAGRLDDATADRHRTVLESVGLPLHY 309          
BLAST of FC877945 vs. ExPASy Swiss-Prot
Match: AROB_PELPD (3-dehydroquinate synthase OS=Pelobacter propionicus (strain DSM 2379) GN=aroB PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 7.688e-21
Identity = 69/242 (28.51%), Postives = 116/242 (47.93%), Query Frame = 1
Query:   37 GEKAKSLDTFTNIVDSMTDFGIIRKEPXXXXXXXXXTDVAGFACAAYRRNTNYIRIPTTVIGLIDARVSIKVAVNYGNYKNRLGAYHAPAHTLLDFGFLRTLPEAQVRNGFAELIKISSCAHLPTFDLLDEFCERLIKTKFGRVSDHDGEIKKAADEINRNGIFEMLKLETPNLHEIGLDRVIAYGHTWS-PLHELAPPVPLRHGHAISIDMAYSATLANDRGLLSDEEHRRLLALFSRAGL 759
            GE+ K+  T   + D +   G+ R             D+AGFA A + R   ++++PTT++  +D+ V  K A+++   KN +GA++ P   L+D   L TLP+ + R G AE+IK      L  ++LL+           GR+ + D +     + I         ++   +  E GL  ++ YGHT    +  LA    L HG A++I M  +A ++   G  S+ +  R++AL  R GL
Sbjct:   73 GEEHKNAATLNLVYDQLIQAGLDRNSYIVALGGGVVGDLAGFAAATFLRGIPFVQVPTTLLAQVDSSVGGKTAIDHPRGKNLIGAFYQPRLVLIDVETLTTLPQREFRAGLAEVIKYGVAMDLAFYELLER--------DSGRILEMDAD---CLERIVLRCCELKARVVEQDEKESGLRAILNYGHTLGHAIETLAGYGTLVHGEAVAIGMVLAARISLAGGYCSEGDVSRIVALLGRFGL 303          
The following BLAST results are available for this feature:
BLAST of FC877945 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
AROB_PROM94.507e-2129.513-dehydroquinate synthase OS=Prochlorococcus marin... [more]
AROB_PROMS5.886e-2129.513-dehydroquinate synthase OS=Prochlorococcus marin... [more]
AROB_PROM25.886e-2129.673-dehydroquinate synthase OS=Prochlorococcus marin... [more]
AROB_PHOPR5.886e-2127.643-dehydroquinate synthase OS=Photobacterium profun... [more]
AROB_COXBU5.886e-2129.153-dehydroquinate synthase OS=Coxiella burnetii GN=... [more]
AROB_COXBR5.886e-2129.153-dehydroquinate synthase OS=Coxiella burnetii (st... [more]
AROB_COXB25.886e-2129.153-dehydroquinate synthase OS=Coxiella burnetii (st... [more]
AROB_VIBPA7.688e-2130.243-dehydroquinate synthase OS=Vibrio parahaemolytic... [more]
AROB_STRAW7.688e-2128.693-dehydroquinate synthase OS=Streptomyces avermiti... [more]
AROB_PELPD7.688e-2128.513-dehydroquinate synthase OS=Pelobacter propionicu... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA78AH03RM1 IVIA1 Citrus clementina cDNA clone IC0AAA78AH03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877945 ID=FC877945; Name=FC877945; organism=Citrus clementina; type=EST; length=881bp
CACCGTCTTGAATTGAAGATTCACCAGACAATGATCGGAGAGAAGGCCAA
GTCCTTGGATACGTTTACCAACATTGTGGACTCCATGACTGATTTTGGAA
TCATTCGGAAAGAGCCTGTTTTGGTTGTGGGCGGAGGACTAGTCACCGAC
GTTGCAGGATTTGCCTGCGCCGCCTATCGCCGCAACACCAATTACATCCG
TATCCCCACAACCGTTATTGGCCTGATCGACGCCCGTGTCAGTATCAAAG
TCGCTGTCAACTACGGCAACTACAAGAACCGACTCGGTGCCTACCATGCA
CCCGCGCACACCCTTCTTGATTTTGGTTTCTTGAGAACCTTGCCCGAGGC
TCAAGTTCGCAACGGGTTTGCCGAGCTCATCAAGATTTCGAGCTGTGCTC
ACTTGCCGACATTTGACTTGTTGGATGAGTTCTGTGAGCGGCTCATCAAG
ACCAAATTCGGGCGTGTCTCCGACCACGATGGAGAGATCAAGAAAGCTGC
CGACGAGATCAACCGGAACGGGATCTTTGAGATGTTGAAGCTCGAAACGC
CGAATCTGCATGAGATCGGCCTGGACCGAGTGATTGCGTATGGCCACACT
TGGTCGCCCCTTCACGAGCTCGCGCCCCCAGTTCCACTTCGCCACGGCCA
TGCCATTTCAATAGATATGGCTTATTCTGCCACTTTGGCGAATGACCGTG
GCCTTCTCAGTGATGAAGAGCACCGGAGATTGTTGGCTCTCTTTTCTCGT
GCAGGCCTCTCCATGGATCACGAACTTTTCTACGAAGAAATTCTGGATAA
AGCCACACAGTCATTTTGAGACCCGAGACGGGCTCTTGCGTGCAGCTGTG
CCAAGTCCACTAGGCAGCTGCAAGTTCTTGA
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