FC877945

Overview
NameFC877945
Unique NameFC877945
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length881
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC877945 vs. ExPASy Swiss-Prot
Match: AROB_DEHSC (3-dehydroquinate synthase OS=Dehalococcoides sp. (strain CBDB1) GN=aroB PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 7.688e-21
Identity = 68/241 (28.22%), Postives = 115/241 (47.72%), Query Frame = 1
Query:   37 GEKAKSLDTFTNIVDSMTDFGIIRKEPXXXXXXXXXTDVAGFACAAYRRNTNYIRIPTTVIGLIDARVSIKVAVNYGNYKNRLGAYHAPAHTLLDFGFLRTLPEAQVRNGFAELIKISSCAHLPTFDLLDEFCERLIKTKFGRVSDHDGEIKKAADEINRNGIFEMLKLETPNLHEIGLDRVIAYGHTWSPLHELAPPVPLRHGHAISIDMAYSATLANDRGLLSDEEHRRLLALFSRAGL 759
            GE  K+LD   +I   + +    R  P          D++GF  A Y+R    I +PT+++  +D+ +  KVAVN+G  KN +G+++ P   + D G L+TLPE +   G AE+IK ++      F        RL++T    V D   E+ +  D +++    +   +   +  + G+  ++ +GHT     E        HG A++I M ++A L+   GL  +E   RL  L +  GL
Sbjct:   73 GEIHKTLDMAAHIYPQLINHFAERNTPILALGGGVIGDLSGFVAATYQRGVPLIHLPTSLLSQVDSSIGGKVAVNHGGVKNIVGSFYQPRLVIADTGCLKTLPEKEFACGMAEIIKSAAIGSSELF--------RLLETNTQAVKDRSPEVME--DIVSQTAAIK-ASIVCQDETDRGIRNILNFGHTLGHALESTSSFSQSHGAAVAIGMCFAARLSVRLGLCENETALRLEKLIADFGL 302          
BLAST of FC877945 vs. ExPASy Swiss-Prot
Match: AROB_COXB1 (3-dehydroquinate synthase OS=Coxiella burnetii (strain CbuK_Q154) GN=aroB PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 7.688e-21
Identity = 72/247 (29.15%), Postives = 117/247 (47.37%), Query Frame = 1
Query:   37 GEKAKSLDTFTNIVDSMTDFGIIRKEPXXXXXXXXXTDVAGFACAAYRRNTNYIRIPTTVIGLIDARVSIKVAVNYGNYKNRLGAYHAPAHTLLDFGFLRTLPEAQVRNGFAELIKISSCAHLPTFDLLDEFCERLIKTKF---GRVSDHDGEIKK---AADEINRNGIFEMLKLETPNLHEIGLDRVIAYGHTWSPLHELAPPVPLRHGHAISIDMAYSATLANDRGLLSDEEHRRLLALFSRAGL 759
            GE+ K+L+ +  I+  +      R             D+ GFA A Y+R  ++I++PTT++  +DA +  K AVN+   KN +GA+H P   ++D   L TLPE + + G AE++K +       F  L+     L++  F     V     EIK+    ADE  R+G   +L L     H I  +R++ YG  W             HG A+S  +  +A L++ + LL  E  +R+  L ++  L
Sbjct:   72 GEQYKTLEYWERILHKLASCNHHRDTTLIALGGGVVGDITGFAAACYQRGVDFIQVPTTLLAQVDASIGGKTAVNHPVGKNLIGAFHQPKAVIIDLNTLNTLPEREFKAGMAEIVKAALIKDEKFFTDLENKMSDLLQRNFIFLQAVIKRAAEIKRDIVNADEKERSGERALLNLGHTFAHAI--ERLLGYGQ-W------------LHGEAVSAGLVLAAQLSHRKNLLDFESLQRICRLLTQISL 303          
BLAST of FC877945 vs. ExPASy Swiss-Prot
Match: AROB_SULNB (3-dehydroquinate synthase OS=Sulfurovum sp. (strain NBC37-1) GN=aroB PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 1.004e-20
Identity = 80/271 (29.52%), Postives = 128/271 (47.23%), Query Frame = 1
Query:   10 ELKIHQTMIGEKAKSLDTFTNIVDSMTDFGIIRKEPXXXXXXXXXTDVAGFACAAYRRNTNYIRIPTTVIGLIDARVSIKVAVNYGNYKNRLGAYHAPAHTLLDFGFLRTLPEAQVRNGFAELIKISSCAHLPTFDLLDEFCERLIKTKFGRVSDHDGEIKKAADEINRNGIFEMLKLETPNLHEIGLDRVIAYGHTWSPLHELAPP-VPLRHGHAISIDMAYSATLANDRGLLSDEEHRRLLALFSRAGLSMDHEL-----FYEE-ILDK 801
            +L++     GE+ K+L+T   I++ + +    RK            D+ GF  + Y+R  ++I+IPTT++  +DA V  K  VN    KN +GA++ P    +D  FL+TLP  +   G AE+IK++       FD   ++ E L+          D E+ K   E  R  +     +   +  E G+  V+ YGHT+  + E         HG A++I M  +  LA + GLL + E  R+ AL  +A L   + +     FYE   LDK
Sbjct:   55 QLEVITVPDGEEYKTLETVETILNELFEHKFDRKSLLIAFGGGVIGDMTGFTASLYQRGIDFIQIPTTLLSQVDASVGGKTGVNNRYGKNLIGAFYQPKAVYIDPAFLKTLPSREFSAGVAEIIKMA-----VMFD--KDYFEFLVTADLS-----DEEVLK---ETIRRSVELKAWVVNQDEKEAGIRAVLNYGHTFGHVVENETGYTTYLHGEAVAIGMVMANALAVELGLLGETEADRIKALLEKASLPTHYTIKDVDDFYEHFFLDK 310          
BLAST of FC877945 vs. ExPASy Swiss-Prot
Match: AROB_CHLTE (3-dehydroquinate synthase OS=Chlorobium tepidum GN=aroB PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 1.004e-20
Identity = 65/238 (27.31%), Postives = 120/238 (50.42%), Query Frame = 1
Query:   40 EKAKSLDTFTNIVDSMTDFGIIRKEPXXXXXXXXXTDVAGFACAAYRRNTNYIRIPTTVIGLIDARVSIKVAVNYGNYKNRLGAYHAPAHTLLDFGFLRTLPEAQVRNGFAELIKISSCAHLPTFDLLDEFCERLIKTKFGRVSDHDGEIKKAADEINRNGIFEMLKLETPNLHEIGLDRVIAYGHTWS-PLHELAPPVPLRHGHAISIDMAYSATLANDRGLLSDEEHRRLLALFSR 750
            E +KS+ T   +   M +  + R             D+ G+  A+Y R    +++PTT++ + D+ +  KVA+N+   KN +G +H P   L+D  +LRTLP  ++  G +E++K    A    FDLL +  + +++ +       +  + KA   ++R+   +   +E       GL   + +GHT++  L ++A    LRHG A++I M  +  L++  G L++ + R  LAL +R
Sbjct:   67 ETSKSVSTAWKLYGQMIEADVDRSWNLLCAGGGVVGDLGGYIAASYYRGIPVVQLPTTLLAMTDSSIGGKVAINHPLGKNLIGFFHMPELVLIDPAYLRTLPSREIYGGMSEVVKYGFIADREFFDLLTKHWDEVVRLE-------EPWLSKA---VSRSAFIKANVVEKDFRETSGLRATLNFGHTFAHGLEKMAGYRNLRHGEAVTIGMVCALFLSHRPGFLAEADLREGLALLAR 294          
BLAST of FC877945 vs. ExPASy Swiss-Prot
Match: AROB_MICAN (3-dehydroquinate synthase OS=Microcystis aeruginosa (strain NIES-843) GN=aroB PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.311e-20
Identity = 67/247 (27.13%), Postives = 111/247 (44.94%), Query Frame = 1
Query:   22 HQTMIGEKAKSLDTFTNIVDSMTDFGIIRKEPXXXXXXXXXTDVAGFACAAYRRNTNYIRIPTTVIGLIDARVSIKVAVNYGNYKNRLGAYHAPAHTLLDFGFLRTLPEAQVRNGFAELIKISSCAHLPTFDLLDEFCERLIKTKFGRVSDHDGEIKKAADEINRNGIFEMLKLETPNLHEIGLDRVIAYGHTWS-PLHELAPPVPLRHGHAISIDMAYSATLANDRGLLSDEEHRRLLALFSRAGL 759
            H    GE  K+LD    + DS     + R             D+ GFA A + R  N++++PTT++ ++DA +  K  VN+   KN +GA++ P   L+D   L+TLP  + R G AE+IK         F  L++             S  DGE+ +    I          + + +  E GL  ++ YGHT +  +  L     + HG A+++ M  +  +A   G+ +  E++R   L  +A L
Sbjct:   69 HLIPAGENYKTLDAIAQVYDSALAHRLERSSTMVALGGGVIGDMTGFAAATWLRGVNFVQVPTTLLAMVDASIGGKTGVNHPQGKNLIGAFYQPKLVLIDPDVLKTLPVREFRAGMAEVIKYGVIWDAELFQQLED------SDNLASFSQIDGELLQT---IITKSCQAKADVVSKDEKEAGLRAILNYGHTIAHGIESLTGYTSVNHGEAVALGMVAAGAIAVKLGMWTAGENQRQTDLIEKAAL 306          
BLAST of FC877945 vs. ExPASy Swiss-Prot
Match: AROB_ALKMQ (3-dehydroquinate synthase OS=Alkaliphilus metalliredigens (strain QYMF) GN=aroB PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.311e-20
Identity = 65/263 (24.71%), Postives = 124/263 (47.15%), Query Frame = 1
Query:   37 GEKAKSLDTFTNIVDSMTDFGIIRKEPXXXXXXXXXTDVAGFACAAYRRNTNYIRIPTTVIGLIDARVSIKVAVNYGNYKNRLGAYHAPAHTLLDFGFLRTLPEAQVRNGFAELIKISSCAHLPTFDLLDEFCERLI---KTKFGRVSDHDGEIKKAADEINRNGIFEMLKLETPNLHEIGLDRVIAYGHT-WSPLHELAPPVPLRHGHAISIDMAYSATLANDRGLLSDEEHRRLLALFSRAGLSMD-HELFYEEILDKATQ 810
            GE  K+L    ++++ M + G+ R             D+AGF  + Y R  ++I++PTT++  +D+ V  K  VN    KN +G+++ P   ++D   L+TLP  ++ +G  E+IK         FD ++E    L+   +T   ++     EIK A              + + +  E+G+ +++ +GHT    +  L       HG A+ + M Y A +A +RG + +   R +  +  + GL ++  +    ++LD  T+
Sbjct:   68 GEPTKNLGNVGHLLEIMLEKGLTRSSKVIALGGGVIGDIAGFTASIYMRGIDFIQVPTTLLAQVDSSVGGKTGVNLEQGKNMVGSFYQPKVVVIDIDLLKTLPHRELISGLGEIIKYGIIYDGEFFDYINENLWNLLALEETVVTKIIKRCCEIKAA--------------IVSQDEQEMGVRKILNFGHTIGHGIEALTHYEKYTHGEAVILGMYYEAQIAKNRGYIDESYFRDIEMIIRKTGLDLNISQFILTDLLDAMTK 316          
BLAST of FC877945 vs. ExPASy Swiss-Prot
Match: AROB_ACIF5 (3-dehydroquinate synthase OS=Acidithiobacillus ferrooxidans (strain ATCC 53993) GN=aroB PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.311e-20
Identity = 72/245 (29.39%), Postives = 113/245 (46.12%), Query Frame = 1
Query:   37 GEKAKSLDTFTNIVDSMTDFGIIRKEPXXXXXXXXXTDVAGFACAAYRRNTNYIRIPTTVIGLIDARVSIKVAVNYGNYKNRLGAYHAPAHTLLDFGFLRTLPEAQVRNGFAELIKISSCAHLPTFDLLDEFCERLIKTK---FGRVSDHDGEIKKAADEINRNGIFEMLKLETPNLHEIGLDRVIAYGHTWSPLHELAPPV-PLRHGHAISIDMAYSATLANDRGLLSDEEHRRLLALFSRAGL 759
            GE++KSLD    I   +   G  R             D+ GFA A Y+R   YI++PTT++ ++D+ V  K  VN+   KN +GA++ P   + D   L +LPE + R+G AE+IK         F  L++  + ++  +     +V  H    K  AD + R+ +            E GL  ++  GHT+    E A       HG A++I M  +A L+    L+ + E  R+ AL    GL
Sbjct:   72 GEESKSLDNIQEIAGRLLSAGYGRDCTLCALGGGVVGDITGFAAAVYQRGVAYIQVPTTLLAMVDSSVGGKTGVNHPLGKNMIGAFYQPQAVIADTDTLDSLPEREFRSGLAEVIKYGLINDQGFFSWLEDHMDAVLAREPDALTKVIRH--SCKDKADIVARDEL------------EGGLRAILNLGHTFGHAIEAATGYGQYLHGEAVAIGMVMAADLSRRLDLIRESEQDRIYALVEATGL 302          
BLAST of FC877945 vs. ExPASy Swiss-Prot
Match: AROB_ACIF2 (3-dehydroquinate synthase OS=Acidithiobacillus ferrooxidans (strain ATCC 23270 / DSM 14882 / NCIB 8455) GN=aroB PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.311e-20
Identity = 72/245 (29.39%), Postives = 113/245 (46.12%), Query Frame = 1
Query:   37 GEKAKSLDTFTNIVDSMTDFGIIRKEPXXXXXXXXXTDVAGFACAAYRRNTNYIRIPTTVIGLIDARVSIKVAVNYGNYKNRLGAYHAPAHTLLDFGFLRTLPEAQVRNGFAELIKISSCAHLPTFDLLDEFCERLIKTK---FGRVSDHDGEIKKAADEINRNGIFEMLKLETPNLHEIGLDRVIAYGHTWSPLHELAPPV-PLRHGHAISIDMAYSATLANDRGLLSDEEHRRLLALFSRAGL 759
            GE++KSLD    I   +   G  R             D+ GFA A Y+R   YI++PTT++ ++D+ V  K  VN+   KN +GA++ P   + D   L +LPE + R+G AE+IK         F  L++  + ++  +     +V  H    K  AD + R+ +            E GL  ++  GHT+    E A       HG A++I M  +A L+    L+ + E  R+ AL    GL
Sbjct:   72 GEESKSLDNIQEIAGRLLSAGYGRDCTLCALGGGVVGDITGFAAAVYQRGVAYIQVPTTLLAMVDSSVGGKTGVNHPLGKNMIGAFYQPQAVIADTDTLDSLPEREFRSGLAEVIKYGLINDQGFFSWLEDHMDAVLAREPDALTKVIRH--SCKDKADIVARDEL------------EGGLRAILNLGHTFGHAIEAATGYGQYLHGEAVAIGMVMAADLSRRLDLIRESEQDRIYALVEATGL 302          
BLAST of FC877945 vs. ExPASy Swiss-Prot
Match: AROB_THEFY (3-dehydroquinate synthase OS=Thermobifida fusca (strain YX) GN=aroB PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.713e-20
Identity = 71/236 (30.08%), Postives = 105/236 (44.49%), Query Frame = 1
Query:   37 GEKAKSLDTFTNIVDSMTDFGIIRKEPXXXXXXXXXTDVAGFACAAYRRNTNYIRIPTTVIGLIDARVSIKVAVNYGNYKNRLGAYHAPAHTLLDFGFLRTLPEAQVRNGFAELIKISSCAHLPTFDLLDEFCERLIKTKFGRVSDHDGEIKKAADEINRNGIFEMLKLETPNLHEIGLDRVIAYGHTWSPLHELAPPVPLRHGHAISIDMAYSATLANDRGLLSD---EEHRRLL 735
            GE AK +    ++   +      R +          TD+AGF  A + R    I +PTT++G++DA V  K  +N    KN +GA+H PA  + D   L +LP      G AE+IK    A     DL++   E   +         DG   +   E+    I    ++ + +L E G   ++ YGHT     E A     RHG+AISI M ++A LA   G +       HRR+L
Sbjct:   72 GEAAKDVSVAADLWARLGQAAFTRTDVIVGVGGGATTDLAGFVAATWLRGVRAILVPTTLLGMVDAAVGGKTGINTAEGKNLVGAFHPPAGVVCDLDTLPSLPREDYIGGLAEVIKAGFIADPVILDLVEADPEAATRP--------DGAHTR---ELIERAIAVKAEVVSADLRESGRREILNYGHTLGHAIERAENYTFRHGYAISIGMVFAAELARLDGRIDAALVARHRRIL 296          
BLAST of FC877945 vs. ExPASy Swiss-Prot
Match: AROB_LEIXX (3-dehydroquinate synthase OS=Leifsonia xyli subsp. xyli GN=aroB PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.713e-20
Identity = 72/249 (28.92%), Postives = 114/249 (45.78%), Query Frame = 1
Query:   10 ELKIHQTMIGEKAKSLDTFTNIVDSMTDFGIIRKEPXXXXXXXXXTDVAGFACAAYRRNTNYIRIPTTVIGLIDARVSIKVAVNYGNYKNRLGAYHAPAHTLLDFGFLRTLPEAQVRNGFAELIKISSCAHLPTFDLLDEFCERLI---KTKFGRVSDHDGEIKKAADEINRNGIFEMLKLETPNLHEIGLDRVIAYGHTWSPLHELAPPVPLRHGHAISIDMAYSATLANDRGLLSD---EEHRRLLA 738
            E+ + +    E AK ++  + +   M      R +          TD+AGFA A + R    ++ PTT++G++DA V  K  +N    KN +GA++APA  + D   L +L   ++  GFAE++K    A     D+++   +        +F RV +    IK               ++   +  E GL  ++ YGHT     E A     RHG AI++ M ++A L    G LSD   E HRR+LA
Sbjct:   63 EVLLTEVPDAEAAKRIEVASFLWCIMGQADFTRSDAVVGLGGGAVTDLAGFAAATWLRGVRLVQAPTTLLGMVDAAVGGKTGINTAEGKNLVGAFYAPAAVVCDLDMLISLGRNELLAGFAEVVKYGFIAEPEILDIIERDVDAATDPESAEFRRVVELSIGIK--------------ARVVGEDFTEQGLREILNYGHTLGHAIEHAERYQWRHGAAIAVGMVFAAELGRLSGRLSDDAVERHRRILA 297          
The following BLAST results are available for this feature:
BLAST of FC877945 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
AROB_DEHSC7.688e-2128.223-dehydroquinate synthase OS=Dehalococcoides sp. (... [more]
AROB_COXB17.688e-2129.153-dehydroquinate synthase OS=Coxiella burnetii (st... [more]
AROB_SULNB1.004e-2029.523-dehydroquinate synthase OS=Sulfurovum sp. (strai... [more]
AROB_CHLTE1.004e-2027.313-dehydroquinate synthase OS=Chlorobium tepidum GN... [more]
AROB_MICAN1.311e-2027.133-dehydroquinate synthase OS=Microcystis aeruginos... [more]
AROB_ALKMQ1.311e-2024.713-dehydroquinate synthase OS=Alkaliphilus metallir... [more]
AROB_ACIF51.311e-2029.393-dehydroquinate synthase OS=Acidithiobacillus fer... [more]
AROB_ACIF21.311e-2029.393-dehydroquinate synthase OS=Acidithiobacillus fer... [more]
AROB_THEFY1.713e-2030.083-dehydroquinate synthase OS=Thermobifida fusca (s... [more]
AROB_LEIXX1.713e-2028.923-dehydroquinate synthase OS=Leifsonia xyli subsp.... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA78AH03RM1 IVIA1 Citrus clementina cDNA clone IC0AAA78AH03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877945 ID=FC877945; Name=FC877945; organism=Citrus clementina; type=EST; length=881bp
CACCGTCTTGAATTGAAGATTCACCAGACAATGATCGGAGAGAAGGCCAA
GTCCTTGGATACGTTTACCAACATTGTGGACTCCATGACTGATTTTGGAA
TCATTCGGAAAGAGCCTGTTTTGGTTGTGGGCGGAGGACTAGTCACCGAC
GTTGCAGGATTTGCCTGCGCCGCCTATCGCCGCAACACCAATTACATCCG
TATCCCCACAACCGTTATTGGCCTGATCGACGCCCGTGTCAGTATCAAAG
TCGCTGTCAACTACGGCAACTACAAGAACCGACTCGGTGCCTACCATGCA
CCCGCGCACACCCTTCTTGATTTTGGTTTCTTGAGAACCTTGCCCGAGGC
TCAAGTTCGCAACGGGTTTGCCGAGCTCATCAAGATTTCGAGCTGTGCTC
ACTTGCCGACATTTGACTTGTTGGATGAGTTCTGTGAGCGGCTCATCAAG
ACCAAATTCGGGCGTGTCTCCGACCACGATGGAGAGATCAAGAAAGCTGC
CGACGAGATCAACCGGAACGGGATCTTTGAGATGTTGAAGCTCGAAACGC
CGAATCTGCATGAGATCGGCCTGGACCGAGTGATTGCGTATGGCCACACT
TGGTCGCCCCTTCACGAGCTCGCGCCCCCAGTTCCACTTCGCCACGGCCA
TGCCATTTCAATAGATATGGCTTATTCTGCCACTTTGGCGAATGACCGTG
GCCTTCTCAGTGATGAAGAGCACCGGAGATTGTTGGCTCTCTTTTCTCGT
GCAGGCCTCTCCATGGATCACGAACTTTTCTACGAAGAAATTCTGGATAA
AGCCACACAGTCATTTTGAGACCCGAGACGGGCTCTTGCGTGCAGCTGTG
CCAAGTCCACTAGGCAGCTGCAAGTTCTTGA
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