FC877945

Overview
NameFC877945
Unique NameFC877945
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length881
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC877945 vs. ExPASy Swiss-Prot
Match: AROB_PSYA2 (3-dehydroquinate synthase OS=Psychrobacter arcticus (strain DSM 17307 / 273-4) GN=aroB PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 2.028e-13
Identity = 60/242 (24.79%), Postives = 104/242 (42.98%), Query Frame = 1
Query:   37 GEKAKSLDTFTNIVDSMTDFGIIRKEPXXXXXXXXXTDVAGFACAAYRRNTNYIRIPTTVIGLIDARVSIKVAVNYGNYKNRLGAYHAPAHTLLDFGFLRTLPEAQVRNGFAELIKISSCAHLPTFDLLDEFCERLIKTKFGRVSDHDGEIKKAADEINRNGIFEMLKLETPNLHEIGLDRVIAYGHTWSPLHELAPPV-PLRHGHAISIDMAYSATLANDRGLLSDEEHRRLLALFSRAGL 759
            GE+ K+  +   I D +      R             D+ GF+ A++ R  N+I+IPTT++  +D+ V  K  +N+   KN +GA+  P   L D   L+TLP  ++  G AE+IK +          L+     ++      +    GE  K   E   +       +   +  E G+  ++ +GHT+  + E         HG A++  M  +A L+   G L+ +E  R+  +   A L
Sbjct:   86 GEQYKNQSSINQIYDVLMAAHFNRDVTLIALGGGVIGDMTGFSAASFMRGVNFIQIPTTLLSQVDSSVGGKTGINHPQGKNMIGAFWQPQMVLADMSTLKTLPARELSAGLAEVIKYALIMDADFLTWLEHNLPAMMALNLVIL----GEAVKRCCEYKAD-------IVAQDERESGVRALLNFGHTFGHVIETHEGYGNWLHGEAVAAGMVQAAELSQKIGWLTSDEVARVKRVLLLANL 316          
BLAST of FC877945 vs. ExPASy Swiss-Prot
Match: AROB_PSEMY (3-dehydroquinate synthase OS=Pseudomonas mendocina (strain ymp) GN=aroB PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 2.028e-13
Identity = 63/242 (26.03%), Postives = 102/242 (42.15%), Query Frame = 1
Query:   37 GEKAKSLDTFTNIVDSMTDFGIIRKEPXXXXXXXXXTDVAGFACAAYRRNTNYIRIPTTVIGLIDARVSIKVAVNYGNYKNRLGAYHAPAHTLLDFGFLRTLPEAQVRNGFAELIKISSCAHLPTFDLLDEFCERLIKTKFGRVSDHDGEIKKAADEINRNGIFEMLKLETPNLHEIGLDRVIAYGHTWSPLHELAPPVPL-RHGHAISIDMAYSATLANDRGLLSDEEHRRLLALFSRAGL 759
            GE  K+ +T   I D +      R+            D+AGFA A Y+R  ++I++PTT++  +D+ V  K  +N+   KN +GA++ P   L+D   L TLP  ++  G AE+IK       P    L+     L      R  D D     A             ++   +  E G+   +  GHT+    E      +  HG A++     +  +++  G +S  E  R + L   AGL
Sbjct:   70 GEAFKNWETLQLIFDGLLTARHDRRTTVVALGGGVIGDMAGFAAACYQRGVDFIQVPTTLLSQVDSSVGGKTGINHPLGKNMVGAFYQPKAVLIDTASLDTLPARELSAGLAEVIKYGLICDEPFLGWLEANMAAL------RSLDQD-----ALTYAIERSCAAKAQVVGADERESGVRATLNLGHTFGHAIETEQGYGVWLHGEAVAAGTVMALEMSHRLGWISVAERDRGVRLLQAAGL 300          
BLAST of FC877945 vs. ExPASy Swiss-Prot
Match: AROB_PARD8 (3-dehydroquinate synthase OS=Parabacteroides distasonis (strain ATCC 8503 / DSM 20701 / NCTC 11152) GN=aroB PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 2.028e-13
Identity = 57/214 (26.64%), Postives = 96/214 (44.86%), Query Frame = 1
Query:   37 GEKAKSLDTFTNIVDSMTDFGIIRKEPXXXXXXXXXTDVAGFACAAYRRNTNYIRIPTTVIGLIDARVSIKVAVNYGNYKNRLGAYHAPAHTLLDFGFLRTLPEAQVRNGFAELIK---ISSCAHLPTFDLLDEFCERLIKTKFGRVSDHDGEIKKAADEINRNGIFEMLKLETPNLHEIGLDRVIAYGHTWSPLHE---LAPPVPLRHGHAIS 660
            G+  K   +   I  ++++ G  R            TD+ GFA A ++R    I IPTT++  +DA V  K  +N+   KN +G+++ P    +D  FLRTL    + +G+AE+IK   ISS  +  +  L D     +    +  ++   G+            + E +  E P   E G+ + + +GHT     E        P+ HGHA++
Sbjct:   61 GDMNKGFVSLAQIWTALSNEGASRNSLLVNLGGGMITDMGGFAGATFKRGIRTINIPTTLMASVDAAVGGKTGINFNGLKNEVGSFYPPLCVFIDCDFLRTLDRDNILSGYAEMIKHGLISSMENYASVMLFD-----IDTMNYSYLNSLVGQ---------SVAVKERIVEEDPK--EQGIRKALNFGHTIGHAFESLSFLKMRPILHGHAVA 258          
BLAST of FC877945 vs. ExPASy Swiss-Prot
Match: AROB_LACPL (3-dehydroquinate synthase OS=Lactobacillus plantarum GN=aroB PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 2.028e-13
Identity = 59/250 (23.60%), Postives = 108/250 (43.20%), Query Frame = 1
Query:   10 ELKIHQTMIGEKAKSLDTFTNIVDSMTDFGIIRKEPXXXXXXXXXTDVAGFACAAYRRNTNYIRIPTTVIGLIDARVSIKVAVNYGNYKNRLGAYHAPAHTLLDFGFLRTLPEAQVRNGFAELIKISSCAHLPTFDLLDEFCERLIKTKFGRVSDHDGEIKKAADEINRNGIFEMLKLETPNLHEIGLDRVIAYGHTWSPLHELAPPVPLRHGHAISIDMAYSATLANDRGLLSDEEHRRLLALFSRAGL 759
            ++++     GE++KS     +++D ++     R +           D+AGF  + Y R    I++PT+++  +D+ V  K A++    KN +G+++ P   ++D   L TLP   +  G+ E++K   CA L   D               +++     +  A D I  +  F+  ++   + HE G  +++ +GHT     EL     L HG A++I +     L    GL        L A     GL
Sbjct:   66 KVRVMTVPAGEESKSWSQVQSLIDQLSAAHFSRSDGVLALGGGVVGDLAGFVASIYMRGIALIQVPTSLLAQVDSSVGGKTAIDLPTGKNLVGSFYQPDLVVIDPAILVTLPPRMLAEGYGEIVK---CAALVGGDFWQ---------SLHQITSVAAILPAAPDLIAASVAFK-ARVVMADEHEQGQRQLLNFGHTIGHAVELLADGQLMHGEAVAIGLVQVCRLFAAHGLAPTSLTSTLKARLMAVGL 302          
BLAST of FC877945 vs. ExPASy Swiss-Prot
Match: AROB_JANSC (3-dehydroquinate synthase OS=Jannaschia sp. (strain CCS1) GN=aroB PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 2.028e-13
Identity = 64/246 (26.02%), Postives = 102/246 (41.46%), Query Frame = 1
Query:   37 GEKAKSLDTFTNIVDSMTDFGIIRKEPXXXXXXXXXTDVAGFACAAYRRNTNYIRIPTTVIGLIDARVSIKVAVNYGNYKNRLGAYHAPAHTLLDFGFLRTLPEAQVRNGFAELIKISSCAHLPTFDLLDEFCERLIKTKFGRVSDHDGEIKKAADEINRNGIFEMLKLETPNLHEIGLDRVIAYGHTWSPLHELAPPVP--LRHGHAISIDMAYSATLANDRGLLSDEEHRRLLALFSRAGLSMD 768
            GE  KS      I D +    + R +           D+AGFA A +RR   +++IPT+++  +D+ V  K  +N    KN +GA+H P+  L D   L TL       G+ E+ K       P F+ L+     + K         D  +++   E  R  +     +   +  E G   ++  GHT+    E A      L HG  ++I  A +  L+   GL S E+  R+ A  +  G   D
Sbjct:   74 GEATKSWPHLQRIADWLLSERVERADIVIAFGGGVIGDLAGFAAAIHRRGIRFVQIPTSLLAQVDSSVGGKTGINAPQGKNLIGAFHQPSLVLADIDVLGTLMPRDFLAGYGEVAKYGMLGDAPFFEWLEANGPAMAK--------GDPALRQ---EAVRRSVQMKADIVARDETEQGDRALLNLGHTFCHALEAATGYSDRLLHGEGVAIGCALAFELSARLGLCSQEDPSRVRAHLAAMGTRRD 308          
BLAST of FC877945 vs. ExPASy Swiss-Prot
Match: AROB_AGRRK (3-dehydroquinate synthase OS=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) GN=aroB PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 2.028e-13
Identity = 57/244 (23.36%), Postives = 101/244 (41.39%), Query Frame = 1
Query:   37 GEKAKSLDTFTNIVDSMTDFGIIRKEPXXXXXXXXXTDVAGFACAAYRRNTNYIRIPTTVIGLIDARVSIKVAVNYGNYKNRLGAYHAPAHTLLDFGFLRTLPEAQVRNGFAELIKISSCAHLPTFDLLDEFCERLIKTKFGRVSDHDGEIKKAADEINRNGIFEMLKLETPNLHEIGLDRVIAYGHTWSPLHELAPPVPLR---HGHAISIDMAYSATLANDRGLLSDEEHRRLLALFSRAGL 759
            GEK KS +    + D++    I R +           D++GFA    RR   ++++PT+++  +D+ V  K  +N  + KN +G +H P   L D   L TL + + R G+AE+ K         F  L+   + +      R+       +  +D +              +  E G   ++  GHT+    E A     R   HG  ++I M  +   ++   L S ++ +R+ A     GL
Sbjct:   82 GEKTKSFEHLMTVCDAVLTARIERNDAVIALGGGVIGDLSGFAAGIVRRGVRFVQVPTSLLSQVDSSVGGKTGINTHHGKNLVGVFHQPDLVLADTDVLNTLSQREFRAGYAEVAKYGLIDKPDFFAWLEANWQDVFSGGAARIEAIAASCQAKSDVV------------VADERENGPRALLNLGHTFGHALEAATAYDSRRLVHGEGVAIGMVLAHEFSSRLNLASPDDAKRVDAHLKTVGL 313          
BLAST of FC877945 vs. ExPASy Swiss-Prot
Match: AROB_SYMTH (3-dehydroquinate synthase OS=Symbiobacterium thermophilum GN=aroB PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.648e-13
Identity = 58/242 (23.97%), Postives = 103/242 (42.56%), Query Frame = 1
Query:   37 GEKAKSLDTFTNIVDSMTDFGIIRKEPXXXXXXXXXTDVAGFACAAYRRNTNYIRIPTTVIGLIDARVSIKVAVNYGNYKNRLGAYHAPAHTLLDFGFLRTLPEAQVRNGFAELIKISSCAHLPTFDLLDEFCERLIKTKFGRVSDHDGEIKKAADEINRNGIFEMLKLETPNLHEIGLDRVIAYGHTWSPLHELAPPVPLRHGHAISIDMAYSATLANDRGLLSDEE-HRRLLALFSRAGL 759
            GE +KSL    ++  S     + R             D+AGF  A Y R    +++PTT++  +D+ +  K  V+    KN +GA+H P+  + D   L++LP  ++  G AE++K           + DE   + ++ + G V   D  +    + +         ++   +  E GL  ++ +GHT     E A      HG  +++ M  +A +A   G+  +     RL  L  R  L
Sbjct:   69 GEASKSLSQAYSLYSSCVRAELDRTSAVVALGGGVVGDLAGFVAATYLRGIPLVQVPTTLLAQVDSSIGGKTGVDLPQGKNLVGAFHQPSLVVADVETLKSLPRRELSAGMAEVVKHGV--------IRDEEFLKYVEVQVGNVLAGDPAV---LERVVAESCRIKAEVVAADPREKGLRAILNFGHTVGHALEAAIGFRWLHGECVAVGMVAAAHIARHSGIAQEGRLELRLTRLLERLDL 299          
BLAST of FC877945 vs. ExPASy Swiss-Prot
Match: AROB_STRZJ (3-dehydroquinate synthase OS=Streptococcus pneumoniae (strain JJA) GN=aroB PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.648e-13
Identity = 57/256 (22.27%), Postives = 115/256 (44.92%), Query Frame = 1
Query:   10 ELKIHQTMIGEKAKSLDTFTNIVDSMTDFGIIRKEPXXXXXXXXXTDVAGFACAAYRRNTNYIRIPTTVIGLIDARVSIKVAVNYGNYKNRLGAYHAPAHTLLDFGFLRTLPEAQVRNGFAELIKISSCAHLPTFDLLDEFCERLIKTKFGRVSDHDGEIKKAADEINRNGIFEMLKLETPNLHEIGLDRVIAYGHT-WSPLHELAPPVPLRHGHAISIDMAYSATLANDRGLLSDEEHRRLLALFSRAGLSMDHE 774
            ++ +   + GE+ K+L T   + + +   G+ R +           D+AGF  + Y R  ++++IPT++   +D+ +  K  VN    KN +G +  P   L+D   L TL + ++  G  E+IK         + LL E     +      + +H   + + + ++ R  + E    E  N    G+   + +GHT    +   A    + HG A+++ M   + +A ++GL+     + +  +  + GL +D+E
Sbjct:   63 QVAVFDFLEGEERKNLTTVQKVYEFLVKQGLTRSDGIVALGGGVVGDLAGFVASTYMRGIHFVQIPTSLTAQVDSSIGGKTGVNTPFAKNMVGTFAQPDGVLIDPLVLETLGKRELIEGMGEVIKYGLIEDPELWALLTE-----LNGSVESILEHAETLIEHSCQVKRKMVVED---ELDN----GIRLYLNFGHTIGHAIEATAGYGKVMHGEAVAMGMVQISKVAEEKGLMPAGITQSITEMCQKFGLPVDYE 306          
BLAST of FC877945 vs. ExPASy Swiss-Prot
Match: AROB_RHOPA (3-dehydroquinate synthase OS=Rhodopseudomonas palustris GN=aroB PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.648e-13
Identity = 59/243 (24.28%), Postives = 100/243 (41.15%), Query Frame = 1
Query:   37 GEKAKSLDTFTNIVDSMTDFGIIRKEPXXXXXXXXXTDVAGFACAAYRRNTNYIRIPTTVIGLIDARVSIKVAVNYGNYKNRLGAYHAPAHTLLDFGFLRTLPEAQVRNGFAELIKISSCAHLPTFDLLDEFCERLIKTKFGRVSDHDGEIKKAADEINRNGIFEMLKLETPNLHEIGLDRVIAYGHTWSPLHELAPPVP--LRHGHAISIDMAYSATLANDRGLLSDEEHRRLLALFSRAGL 759
            GE +KS      + +++    I R +           D+AGF+ +  RR  +++++PT+++  +D+ V  K  +N    KN +G +H P   L D   L TL   Q R G+AE+ K  +      F  L+     L      R        +  A  + R+              E G   ++  GHT+    E A      L HG  ++I M  +A  + +RG++   +  RL    +  GL
Sbjct:   82 GESSKSYAGLEQVCEALIAAKIERNDLVIALGGGVIGDLAGFSASLLRRGVDFVQVPTSLLAQVDSSVGGKTGINSPQGKNLIGTFHQPVLVLADTAILDTLSPRQFRAGYAEVAKYGALGDEAFFAWLEANHAELFSGGAAREHAVATSCRAKAAIVARDE------------RETGDRALLNLGHTFGHALEAATGFSDRLFHGEGVAIGMVLAAEFSAERGMMPATDAERLAKHLAEVGL 312          
BLAST of FC877945 vs. ExPASy Swiss-Prot
Match: AROB_RHIME (3-dehydroquinate synthase OS=Rhizobium meliloti GN=aroB PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.648e-13
Identity = 60/244 (24.59%), Postives = 101/244 (41.39%), Query Frame = 1
Query:   37 GEKAKSLDTFTNIVDSMTDFGIIRKEPXXXXXXXXXTDVAGFACAAYRRNTNYIRIPTTVIGLIDARVSIKVAVNYGNYKNRLGAYHAPAHTLLDFGFLRTLPEAQVRNGFAELIKISSCAHLPTFDLLDEFCERLIKTKFGRVSDHDGEIKKAADEINRNGIFEMLKLETPNLHEIGLDRVIAYGHTWSPLHELAPPVP---LRHGHAISIDMAYSATLANDRGLLSDEEHRRLLALFSRAGL 759
            GEK KS +    + +++    I R +           D+ GFA    RR + +I+IPT+++  +D+ V  K  +N  + KN +G +H P   L D   L TL   + R G+AE+ K         F+ L++  + +      R+       +  AD +              +  E G   ++  GHT+    E A       L HG  ++I M  +   +    L S ++ RR+ A     GL
Sbjct:   82 GEKTKSFEHLIPVCEAILGARIERNDAVIALGGGVIGDLTGFAAGIVRRGSRFIQIPTSLLAQVDSSVGGKTGINSAHGKNLIGVFHQPDLVLADTAALDTLSPREFRAGYAEVAKYGLIDKPEFFEWLEKNWQAVFAGGPARIEAIAVSCQAKADVV------------AADERENGRRALLNLGHTFGHALEAATDYDSKRLVHGEGVAIGMVLAHEFSARMNLASPDDARRVEAHLKTVGL 313          
The following BLAST results are available for this feature:
BLAST of FC877945 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
AROB_PSYA22.028e-1324.793-dehydroquinate synthase OS=Psychrobacter arcticu... [more]
AROB_PSEMY2.028e-1326.033-dehydroquinate synthase OS=Pseudomonas mendocina... [more]
AROB_PARD82.028e-1326.643-dehydroquinate synthase OS=Parabacteroides dista... [more]
AROB_LACPL2.028e-1323.603-dehydroquinate synthase OS=Lactobacillus plantar... [more]
AROB_JANSC2.028e-1326.023-dehydroquinate synthase OS=Jannaschia sp. (strai... [more]
AROB_AGRRK2.028e-1323.363-dehydroquinate synthase OS=Agrobacterium radioba... [more]
AROB_SYMTH2.648e-1323.973-dehydroquinate synthase OS=Symbiobacterium therm... [more]
AROB_STRZJ2.648e-1322.273-dehydroquinate synthase OS=Streptococcus pneumon... [more]
AROB_RHOPA2.648e-1324.283-dehydroquinate synthase OS=Rhodopseudomonas palu... [more]
AROB_RHIME2.648e-1324.593-dehydroquinate synthase OS=Rhizobium meliloti GN... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA78AH03RM1 IVIA1 Citrus clementina cDNA clone IC0AAA78AH03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877945 ID=FC877945; Name=FC877945; organism=Citrus clementina; type=EST; length=881bp
CACCGTCTTGAATTGAAGATTCACCAGACAATGATCGGAGAGAAGGCCAA
GTCCTTGGATACGTTTACCAACATTGTGGACTCCATGACTGATTTTGGAA
TCATTCGGAAAGAGCCTGTTTTGGTTGTGGGCGGAGGACTAGTCACCGAC
GTTGCAGGATTTGCCTGCGCCGCCTATCGCCGCAACACCAATTACATCCG
TATCCCCACAACCGTTATTGGCCTGATCGACGCCCGTGTCAGTATCAAAG
TCGCTGTCAACTACGGCAACTACAAGAACCGACTCGGTGCCTACCATGCA
CCCGCGCACACCCTTCTTGATTTTGGTTTCTTGAGAACCTTGCCCGAGGC
TCAAGTTCGCAACGGGTTTGCCGAGCTCATCAAGATTTCGAGCTGTGCTC
ACTTGCCGACATTTGACTTGTTGGATGAGTTCTGTGAGCGGCTCATCAAG
ACCAAATTCGGGCGTGTCTCCGACCACGATGGAGAGATCAAGAAAGCTGC
CGACGAGATCAACCGGAACGGGATCTTTGAGATGTTGAAGCTCGAAACGC
CGAATCTGCATGAGATCGGCCTGGACCGAGTGATTGCGTATGGCCACACT
TGGTCGCCCCTTCACGAGCTCGCGCCCCCAGTTCCACTTCGCCACGGCCA
TGCCATTTCAATAGATATGGCTTATTCTGCCACTTTGGCGAATGACCGTG
GCCTTCTCAGTGATGAAGAGCACCGGAGATTGTTGGCTCTCTTTTCTCGT
GCAGGCCTCTCCATGGATCACGAACTTTTCTACGAAGAAATTCTGGATAA
AGCCACACAGTCATTTTGAGACCCGAGACGGGCTCTTGCGTGCAGCTGTG
CCAAGTCCACTAGGCAGCTGCAAGTTCTTGA
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