FC877945

Overview
NameFC877945
Unique NameFC877945
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length881
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC877945 vs. ExPASy Swiss-Prot
Match: AROB_PARDP (3-dehydroquinate synthase OS=Paracoccus denitrificans (strain Pd 1222) GN=aroB PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.648e-13
Identity = 67/243 (27.57%), Postives = 99/243 (40.74%), Query Frame = 1
Query:   37 GEKAKSLDTFTNIVDSMTDFGIIRKEPXXXXXXXXXTDVAGFACAAYRRNTNYIRIPTTVIGLIDARVSIKVAVNYGNYKNRLGAYHAPAHTLLDFGFLRTLPEAQVRNGFAELIKISSCAHLPTFDLLDEFCERLIKTKFGRVSDHDGEIKKAADEINRNGIFEMLKLETPNLHEIGLDRVIAYGHTWSPLHELAPPVP--LRHGHAISIDMAYSATLANDRGLLSDEEHRRLLALFSRAGL 759
            GE  K        V+ +    I RK+           D+AGFA A  RR   +++IPTT++  +D+ V  K  +N    KN +GA+H PA  L D   L TL     R G+ E+ K         F+ L+     L      R       ++  A  + R+        ET    E G   ++  GHT+    E A      L HG  ++I  A +  L+   GL S E   R+ A  +  G+
Sbjct:   75 GEATKCWAELGRAVEWLLAQRIERKDLVIALGGGVIGDLAGFAAAILRRGVRFVQIPTTLLAQVDSSVGGKTGINSPQGKNLIGAFHQPALVLADIDVLTTLSPRDFRAGYGEVAKYGLLGDEGFFEWLEANAAGLASDPALRQRAVRHSVEMKAGIVQRD--------ET----EQGERALLNLGHTFGHALESATGYSDRLLHGEGVAIGCALAFELSAKMGLCSQEAPSRVAAHLAAMGM 305          
BLAST of FC877945 vs. ExPASy Swiss-Prot
Match: AROB_BACSK (3-dehydroquinate synthase OS=Bacillus clausii (strain KSM-K16) GN=aroB PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.648e-13
Identity = 60/222 (27.03%), Postives = 98/222 (44.14%), Query Frame = 1
Query:   37 GEKAKSLDTFTNIVDSMTDFGIIRKEPXXXXXXXXXTDVAGFACAAYRRNTNYIRIPTTVIGLIDARVSIKVAVNYGNYKNRLGAYHAPAHTLLDFGFLRTLPEAQVRNGFAELIKISSCAHLPTFDLLDEFCERLIKTKFGRVSDHDGE-IKKAADEINRNGIFEMLKLETPNLHEIGLDRVIAYGHTWSPLHELAPPV---PLRHGHAISIDMAYSATLA 690
            GE++KS   +  +     +  + R+            D+AGF    Y R   +I++PTT++   D+ V  KVAVN    KN +G +H P   L D   L TLPE + R+GFAE++K+   A       L E    L   K   +     + I   AD + ++              E G+   + +GHT +  H +   +    + HG A++I M ++  L+
Sbjct:   69 GEQSKSFHVYEQLAAFCLEKQLDRQSVIIAFGGGVVGDLAGFVAGTYMRGVRFIQVPTTLLAH-DSSVGGKVAVNLPAAKNMIGVFHQPEAVLFDTELLATLPEHEWRSGFAEIVKLGFIADASFLAWLRETVPALTSIKADNLQKMVAKAIAIKADIVGKDE------------KEHGIRAHLNFGHTLA--HAIEAELGYGKITHGEAVAIGMRFAFRLS 275          
BLAST of FC877945 vs. ExPASy Swiss-Prot
Match: AROB_BACA2 (3-dehydroquinate synthase OS=Bacillus amyloliquefaciens (strain FZB42) GN=aroB PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.648e-13
Identity = 61/215 (28.37%), Postives = 99/215 (46.05%), Query Frame = 1
Query:   37 GEKAKSLDTFTNIVDSMTDFGIIRKEPXXXXXXXXXTDVAGFACAAYRRNTNYIRIPTTVIGLIDARVSIKVAVNYGNYKNRLGAYHAPAHTLLDFGFLRTLPEAQVRNGFAELIKISSCAHLPTFDLLDEFCERLIKTKFGRVSDHDGEIKKAADEINRNGIFEMLKLETPNLHEIGLDRVIAYGHTWSPLHELAPPV-PLRHGHAISIDMAYS 678
            GE+AKSL  +  I      F + R             D+AGF  A + R  ++I++PTT++   D+ V  KVAVN+   KN +GA++ P   + D   L+TLPE ++R+G AE+IK +  A          F E+L+           G      +E+   GI     +   +  E G+   + +GHT     E       + HG A+++ M ++
Sbjct:   73 GEEAKSLKEYERIQTEAIAFHMDRSSCMIAFGGGVTGDLAGFCAATFMRGIDFIQMPTTLLAH-DSAVGGKVAVNHKLGKNLIGAFYQPKAVIYDTELLKTLPEQELRSGMAEVIKHAFIAD-------HAFLEKLL-----TFDTLQGLTSAELNEMIYKGISIKSAVVREDEKEEGIRAFLNFGHTLGHAVEAEYGYGRITHGDAVALGMQFA 274          
BLAST of FC877945 vs. ExPASy Swiss-Prot
Match: AROB_STRT2 (3-dehydroquinate synthase OS=Streptococcus thermophilus (strain ATCC BAA-250 / LMG 18311) GN=aroB PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.459e-13
Identity = 57/256 (22.27%), Postives = 113/256 (44.14%), Query Frame = 1
Query:   10 ELKIHQTMIGEKAKSLDTFTNIVDSMTDFGIIRKEPXXXXXXXXXTDVAGFACAAYRRNTNYIRIPTTVIGLIDARVSIKVAVNYGNYKNRLGAYHAPAHTLLDFGFLRTLPEAQVRNGFAELIKISSCAHLPTFDLLDEFCERLIKTKFGRVSDHDGEIKKAADEINRNGIFEMLKLETPNLHEIGLDRVIAYGHT-WSPLHELAPPVPLRHGHAISIDMAYSATLANDRGLLSDEEHRRLLALFSRAGLSMDHE 774
            E+ +   + GE +K+L T     + +   G+ R +           D+AGF  + Y R  +++++PT++   +D+ +  K  VN    KN +G +  P   L+D   L+TL + ++  G  E++K         + LLD      I      + ++   I   +  + R       K+   +  E G+   + +GHT    + + A    + HG A++I M   + +A  + L+     R++  +  + GL +D+E
Sbjct:   63 EVVVFDFLEGEASKNLKTVNKAYEFLIKNGMTRSDGIVALGGGVVGDLAGFVASTYMRGIHFVQVPTSLTAQVDSSIGGKTGVNTPFAKNIVGTFAQPDGVLIDPNVLKTLGKRELIEGMGEVVKYGLIDDPELWQLLDN-----IDGSVHSILENSETIIYRSCNVKR-------KIVVEDEFEGGVRMYLNFGHTIGHAVEQTAGYGKVMHGEAVAIGMVQISRVAEKKKLMPQGITRQIAEMCVKFGLPVDYE 306          
BLAST of FC877945 vs. ExPASy Swiss-Prot
Match: AROB_STRT1 (3-dehydroquinate synthase OS=Streptococcus thermophilus (strain CNRZ 1066) GN=aroB PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.459e-13
Identity = 57/256 (22.27%), Postives = 113/256 (44.14%), Query Frame = 1
Query:   10 ELKIHQTMIGEKAKSLDTFTNIVDSMTDFGIIRKEPXXXXXXXXXTDVAGFACAAYRRNTNYIRIPTTVIGLIDARVSIKVAVNYGNYKNRLGAYHAPAHTLLDFGFLRTLPEAQVRNGFAELIKISSCAHLPTFDLLDEFCERLIKTKFGRVSDHDGEIKKAADEINRNGIFEMLKLETPNLHEIGLDRVIAYGHT-WSPLHELAPPVPLRHGHAISIDMAYSATLANDRGLLSDEEHRRLLALFSRAGLSMDHE 774
            E+ +   + GE +K+L T     + +   G+ R +           D+AGF  + Y R  +++++PT++   +D+ +  K  VN    KN +G +  P   L+D   L+TL + ++  G  E++K         + LLD      I      + ++   I   +  + R       K+   +  E G+   + +GHT    + + A    + HG A++I M   + +A  + L+     R++  +  + GL +D+E
Sbjct:   63 EVVVFDFLEGEASKNLKTVNKAYEFLIKNGMTRSDGIVALGGGVVGDLAGFVASTYMRGIHFVQVPTSLTAQVDSSIGGKTGVNTPFAKNIVGTFAQPDGVLIDPNVLKTLGKRELIEGMGEVVKYGLIDDPELWQLLDN-----IDGSVHSILENSETIIYRSCNVKR-------KIVVEDEFEGGVRMYLNFGHTIGHAVEQTAGYGKVMHGEAVAIGMVQISRVAEKKKLMPQGITRQIAEMCVKFGLPVDYE 306          
BLAST of FC877945 vs. ExPASy Swiss-Prot
Match: AROB_RHOPT (3-dehydroquinate synthase OS=Rhodopseudomonas palustris (strain TIE-1) GN=aroB PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.459e-13
Identity = 59/243 (24.28%), Postives = 101/243 (41.56%), Query Frame = 1
Query:   37 GEKAKSLDTFTNIVDSMTDFGIIRKEPXXXXXXXXXTDVAGFACAAYRRNTNYIRIPTTVIGLIDARVSIKVAVNYGNYKNRLGAYHAPAHTLLDFGFLRTLPEAQVRNGFAELIKISSCAHLPTFDLLDEFCERLIKTKFGRVSDHDGEIKKAADEINRNGIFEMLKLETPNLHEIGLDRVIAYGHTWSPLHELAPPVP--LRHGHAISIDMAYSATLANDRGLLSDEEHRRLLALFSRAGL 759
            GE +KS      + +++    I R +           D+AGF+ +  RR  +++++PT+++  +D+ V  K  +N    KN +G +H P   L D   L TL   Q R G+AE+ K  +      F  L+     L      R        +  A  + R+              E G   ++  GHT+    E A      L HG  ++I M  +A  + +RG++   + +RL    +  GL
Sbjct:   82 GESSKSYAGLEQVCEALIAAKIERNDLVIALGGGVIGDLAGFSASLLRRGVDFVQVPTSLLAQVDSSVGGKTGINSPQGKNLIGTFHQPVLVLADTAILDTLSPRQFRAGYAEVAKYGALGDEAFFAWLEANHAELFSGGAAREHAVATSCRAKAAIVARDE------------RETGDRALLNLGHTFGHALEAATGFSDRLFHGEGVAIGMVLAAEFSAERGMMPAADAQRLAKHLADVGL 312          
BLAST of FC877945 vs. ExPASy Swiss-Prot
Match: AROB_RHIL3 (3-dehydroquinate synthase OS=Rhizobium leguminosarum bv. viciae (strain 3841) GN=aroB PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.459e-13
Identity = 58/244 (23.77%), Postives = 98/244 (40.16%), Query Frame = 1
Query:   37 GEKAKSLDTFTNIVDSMTDFGIIRKEPXXXXXXXXXTDVAGFACAAYRRNTNYIRIPTTVIGLIDARVSIKVAVNYGNYKNRLGAYHAPAHTLLDFGFLRTLPEAQVRNGFAELIKISSCAHLPTFDLLDEFCERLIKTKFGRVSDHDGEIKKAADEINRNGIFEMLKLETPNLHEIGLDRVIAYGHTWSPLHELAPPVP---LRHGHAISIDMAYSATLANDRGLLSDEEHRRLLALFSRAGL 759
            GEK KS +      D + +  + R +           D++GFA    RR   ++++PT+++  +D+ V  K  +N  + KN +G +H P   L D   L +L E + R G+AE+ K         F  L+   + +      R+       +  AD +              +  E G   ++  GHT+    E A       L HG  +SI M  +   +    L S ++ RR+       GL
Sbjct:   82 GEKTKSFEHLITACDKLLEARVERNDYVIALGGGVIGDLSGFAAGIVRRGVRFVQVPTSLLSQVDSSVGGKTGINSRHGKNLIGVFHQPDLVLADTDVLNSLSEREFRAGYAEVAKYGLIDKPDFFAWLEANWKSVFTGGSARIEAIAASCQAKADVV------------VADERENGQRALLNLGHTFGHALEAATAYDSSRLVHGEGVSIGMVLAYEFSARMNLASPDDARRVERHLKEVGL 313          
BLAST of FC877945 vs. ExPASy Swiss-Prot
Match: AROB_RHIEC (3-dehydroquinate synthase OS=Rhizobium etli (strain CFN 42 / ATCC 51251) GN=aroB PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.459e-13
Identity = 59/245 (24.08%), Postives = 98/245 (40.00%), Query Frame = 1
Query:   37 GEKAKSLDTFTNIVDSMTDFGIIRKEPXXXXXXXXXTDVAGFACAAYRRNTNYIRIPTTVIGLIDARVSIKVAVNYGNY-KNRLGAYHAPAHTLLDFGFLRTLPEAQVRNGFAELIKISSCAHLPTFDLLDEFCERLIKTKFGRVSDHDGEIKKAADEINRNGIFEMLKLETPNLHEIGLDRVIAYGHTWSPLHELAPPVPLR---HGHAISIDMAYSATLANDRGLLSDEEHRRLLALFSRAGL 759
            GEK KS +    + D + +  + R +           D++GFA    RR   ++++PT+++  +D+ V  K  +N   + KN +G +H P   L D   L TL E + R G+AE+ K         F  L+     +      R+       +  AD +              +  E G   ++  GHT+    E A     R   HG  +SI M  +   +    L S ++ RR+       GL
Sbjct:   82 GEKTKSFEHLITVCDKVLEARVERNDCVIALGGGVIGDLSGFAAGIVRRGVRFVQVPTSLLSQVDSSVGGKTGINSPRHGKNLIGVFHQPDLVLADTDVLNTLSEREFRAGYAEVAKYGLIDKPDFFTWLEANWRSVFTGGSARIEAIAASCQAKADVV------------VADERENGQRALLNLGHTFGHALEAATAYDSRRLVHGEGVSIGMVLAHEFSARMNLASPDDARRVERHLREVGL 314          
BLAST of FC877945 vs. ExPASy Swiss-Prot
Match: AROB_LEPIN (3-dehydroquinate synthase OS=Leptospira interrogans GN=aroB PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.459e-13
Identity = 59/248 (23.79%), Postives = 108/248 (43.55%), Query Frame = 1
Query:   37 GEKAKSLDTFTNIVDSMTDFGIIRKEPXXXXXXXXXTDVAGFACAAYRRNTNYIRIPTTVIGLIDARVSIKVAVNYGNYKNRLGAYHAPAHTLLDFGFLRTLPEAQVRNGFAELIKISSCAHLPTFDLLDEFCERLIKTKFGRVSDHDGEIKKAADEINRNGIFEMLKLETPNLHEIGLDRVIAYGHTWS-PLHELAPPVPLRHGHAISIDMAYSATLANDRGLLSDEEHRRLLALFSRAGLSMDHEL 777
            GEK+K ++    + + + ++G  RK            D AGF  + Y R   +++IPTT++  +D+ V  KVAVN    KN +G+++ P         L TLP+ + + G AE+IK S  +         E+ E+ +KT   +  + D  I      +    +     + + +  E GL +++  GHT +  +  +       HG A++I +  +  L+     L     +  +      GL    +L
Sbjct:   73 GEKSKHINRTGEVYNQLIEYGADRKSLILAFGGGVVGDFAGFIASTYLRGIRFVQIPTTLLACVDSSVGGKVAVNADFGKNMIGSFYQPEFVFAPLSVLSTLPDREWKCGQAEIIKHSLLSG-------GEYWEK-VKTHSFKDLNVDSTI---LPYLIAESVRFKANVVSSDEKETGLRKILNLGHTTAHAIESVTKYKKYSHGEAVAIGLVTALLLSEQHSELDPVTTKETIESLKNYGLPFQTKL 309          
BLAST of FC877945 vs. ExPASy Swiss-Prot
Match: AROB_LEPIC (3-dehydroquinate synthase OS=Leptospira interrogans serogroup Icterohaemorrhagiae serovar copenhageni GN=aroB PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.459e-13
Identity = 59/248 (23.79%), Postives = 108/248 (43.55%), Query Frame = 1
Query:   37 GEKAKSLDTFTNIVDSMTDFGIIRKEPXXXXXXXXXTDVAGFACAAYRRNTNYIRIPTTVIGLIDARVSIKVAVNYGNYKNRLGAYHAPAHTLLDFGFLRTLPEAQVRNGFAELIKISSCAHLPTFDLLDEFCERLIKTKFGRVSDHDGEIKKAADEINRNGIFEMLKLETPNLHEIGLDRVIAYGHTWS-PLHELAPPVPLRHGHAISIDMAYSATLANDRGLLSDEEHRRLLALFSRAGLSMDHEL 777
            GEK+K ++    + + + ++G  RK            D AGF  + Y R   +++IPTT++  +D+ V  KVAVN    KN +G+++ P         L TLP+ + + G AE+IK S  +         E+ E+ +KT   +  + D  I      +    +     + + +  E GL +++  GHT +  +  +       HG A++I +  +  L+     L     +  +      GL    +L
Sbjct:   73 GEKSKHINRTGEVYNQLIEYGADRKSLILAFGGGVVGDFAGFIASTYLRGIRFVQIPTTLLACVDSSVGGKVAVNADFGKNMIGSFYQPEFVFAPLSVLSTLPDREWKCGQAEIIKHSLLSG-------GEYWEK-VKTHSFKDLNVDSTI---LPYLIAESVRFKANVVSSDEKETGLRKILNLGHTTAHAIESVTKYKKYSHGEAVAIGLVTALLLSEQHSELDPVTTKETIESLKNYGLPFQTKL 309          
The following BLAST results are available for this feature:
BLAST of FC877945 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
AROB_PARDP2.648e-1327.573-dehydroquinate synthase OS=Paracoccus denitrific... [more]
AROB_BACSK2.648e-1327.033-dehydroquinate synthase OS=Bacillus clausii (str... [more]
AROB_BACA22.648e-1328.373-dehydroquinate synthase OS=Bacillus amyloliquefa... [more]
AROB_STRT23.459e-1322.273-dehydroquinate synthase OS=Streptococcus thermop... [more]
AROB_STRT13.459e-1322.273-dehydroquinate synthase OS=Streptococcus thermop... [more]
AROB_RHOPT3.459e-1324.283-dehydroquinate synthase OS=Rhodopseudomonas palu... [more]
AROB_RHIL33.459e-1323.773-dehydroquinate synthase OS=Rhizobium leguminosar... [more]
AROB_RHIEC3.459e-1324.083-dehydroquinate synthase OS=Rhizobium etli (strai... [more]
AROB_LEPIN3.459e-1323.793-dehydroquinate synthase OS=Leptospira interrogan... [more]
AROB_LEPIC3.459e-1323.793-dehydroquinate synthase OS=Leptospira interrogan... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA78AH03RM1 IVIA1 Citrus clementina cDNA clone IC0AAA78AH03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877945 ID=FC877945; Name=FC877945; organism=Citrus clementina; type=EST; length=881bp
CACCGTCTTGAATTGAAGATTCACCAGACAATGATCGGAGAGAAGGCCAA
GTCCTTGGATACGTTTACCAACATTGTGGACTCCATGACTGATTTTGGAA
TCATTCGGAAAGAGCCTGTTTTGGTTGTGGGCGGAGGACTAGTCACCGAC
GTTGCAGGATTTGCCTGCGCCGCCTATCGCCGCAACACCAATTACATCCG
TATCCCCACAACCGTTATTGGCCTGATCGACGCCCGTGTCAGTATCAAAG
TCGCTGTCAACTACGGCAACTACAAGAACCGACTCGGTGCCTACCATGCA
CCCGCGCACACCCTTCTTGATTTTGGTTTCTTGAGAACCTTGCCCGAGGC
TCAAGTTCGCAACGGGTTTGCCGAGCTCATCAAGATTTCGAGCTGTGCTC
ACTTGCCGACATTTGACTTGTTGGATGAGTTCTGTGAGCGGCTCATCAAG
ACCAAATTCGGGCGTGTCTCCGACCACGATGGAGAGATCAAGAAAGCTGC
CGACGAGATCAACCGGAACGGGATCTTTGAGATGTTGAAGCTCGAAACGC
CGAATCTGCATGAGATCGGCCTGGACCGAGTGATTGCGTATGGCCACACT
TGGTCGCCCCTTCACGAGCTCGCGCCCCCAGTTCCACTTCGCCACGGCCA
TGCCATTTCAATAGATATGGCTTATTCTGCCACTTTGGCGAATGACCGTG
GCCTTCTCAGTGATGAAGAGCACCGGAGATTGTTGGCTCTCTTTTCTCGT
GCAGGCCTCTCCATGGATCACGAACTTTTCTACGAAGAAATTCTGGATAA
AGCCACACAGTCATTTTGAGACCCGAGACGGGCTCTTGCGTGCAGCTGTG
CCAAGTCCACTAGGCAGCTGCAAGTTCTTGA
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