FC877945

Overview
NameFC877945
Unique NameFC877945
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length881
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC877945 vs. ExPASy Swiss-Prot
Match: AROB_BRASB (3-dehydroquinate synthase OS=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) GN=aroB PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.928e-12
Identity = 58/243 (23.87%), Postives = 100/243 (41.15%), Query Frame = 1
Query:   37 GEKAKSLDTFTNIVDSMTDFGIIRKEPXXXXXXXXXTDVAGFACAAYRRNTNYIRIPTTVIGLIDARVSIKVAVNYGNYKNRLGAYHAPAHTLLDFGFLRTLPEAQVRNGFAELIKISSCAHLPTFDLLDEFCERLIKTKFGRVSDHDGEIKKAADEINRNGIFEMLKLETPNLHEIGLDRVIAYGHTWSPLHELAPPVP--LRHGHAISIDMAYSATLANDRGLLSDEEHRRLLALFSRAGL 759
            GE +K+      + +++    I R +           D+AGFA A  RR  N++++PT+++  +D+ V  K  +N    KN LGA+H P   + D   L TL   Q R G+AE+ K         F  L+     ++     R        +  A  + R+              E G   ++  GHT+    E        L HG  +++ M  +A  + + G+L  ++  R+    +  GL
Sbjct:   82 GEGSKTYAGLEKVSEALIAAKIERNDLVIALGGGVVGDLAGFAAAILRRGVNFVQVPTSLLAQVDSSVGGKTGINSPQGKNLLGAFHQPVLVIADTAVLDTLSPRQFRAGYAEVAKYGLLGDAGFFTWLEANHADIVTGGAAREHAVATSCRAKAAIVARDE------------RETGDRALLNLGHTFGHALEAITGFSDRLFHGEGVAVGMVLAAQFSAELGMLPPDDVTRIERHLAAVGL 312          
BLAST of FC877945 vs. ExPASy Swiss-Prot
Match: AROB_BACCN (3-dehydroquinate synthase OS=Bacillus cereus subsp. cytotoxis (strain NVH 391-98) GN=aroB PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.928e-12
Identity = 41/116 (35.34%), Postives = 63/116 (54.31%), Query Frame = 1
Query:   37 GEKAKSLDTFTNIVDSMTDFGIIRKEPXXXXXXXXXTDVAGFACAAYRRNTNYIRIPTTVIGLIDARVSIKVAVNYGNYKNRLGAYHAPAHTLLDFGFLRTLPEAQVRNGFAELIK 384
            GEK KS + F  +  +  +  + R             D+AGF  A + R   ++++PTT++   D+ V  KVA+N+   KN +GA+H P   L    FL +LPE + R+GFAE+IK
Sbjct:   73 GEKEKSFENFYAVHTAALENKLDRNSLIIALGGGMIGDLAGFVAATFMRGIRFVQVPTTLLAH-DSAVGGKVAINHPLGKNMIGAFHQPEAVLYHTPFLDSLPEKEWRSGFAEVIK 187          
BLAST of FC877945 vs. ExPASy Swiss-Prot
Match: AROB_CHLFF (3-dehydroquinate synthase OS=Chlamydophila felis (strain Fe/C-56) GN=aroB PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.824e-12
Identity = 56/231 (24.24%), Postives = 97/231 (41.99%), Query Frame = 1
Query:   37 GEKAKSLDTFTNIVDSMTDFGIIRKEPXXXXXXXXXTDVAGFACAAYRRNTNYIRIPTTVIGLIDARVSIKVAVNYGNYKNRLGAYHAPAHTLLDFGFLRTLPEAQVRNGFAELIKISSCAHLPTFDLLDE-----FCERLIKTKFGRVSDHDGEIKKAADEINRNGIFEMLKLETPNLHEIGLDRVIAYGHTWSPLHELAPPVPLRHGHAISIDMAYSATLANDRGLLSD 714
            GEK K+ + F ++ + + D G+               D+AGF  + Y R      IPTT+  +IDA +  K  +N    KNRLG ++ P    +   FL TL + +   G +E IK    A    ++ L       F  R I  +F + +     +  A D  ++N                 L +++ +GHT +   E      + HG A+S+ M     ++ + G++ +
Sbjct:   68 GEKNKTWEIFISLQNQLVDHGVSLGATIMGIGGGIVLDMAGFLASTYCRGIQLFLIPTTMTAMIDASIGGKNGINLRGLKNRLGTFYPPKDVWVCPEFLTTLSKQEWCYGISESIKHGCVADAYIWEFLHSYGDTLFSSRTILNEFIKRNCQIKAVIAAKDPKDKN-----------------LRKILNFGHTIAHALETLSEGHIPHGLAVSVGMMIEIKISLESGIMKN 281          
BLAST of FC877945 vs. ExPASy Swiss-Prot
Match: AROB_BORPE (3-dehydroquinate synthase OS=Bordetella pertussis GN=aroB PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.824e-12
Identity = 65/257 (25.29%), Postives = 104/257 (40.47%), Query Frame = 1
Query:   37 GEKAKSLDTFTNIVDSMTDFGIIRKEPXXXXXXXXXTDVAGFACAAYRRNTNYIRIPTTVIGLIDARVSIKVAVNYGNYKNRLGAYHAPAHTLLDFGFLRTLPEAQVRNGFAELIKISSCAHLPTFDLLDEFCERLIKTKFGRVSDHDGEIKKAADEINRNGIFEMLKLET----PNLHEIGLDRVIAYGHTWSPLHELAPPVPLRHGHAISIDMAYSATLANDR---GLLSDEEHRRLLALFSRAGLSMDHELFYE 786
            GE  K   T   I D++ +  + R+            D+ GFA A Y R   ++++PTT++  +D+ V  K AVN+   KN +GA++ P    +D   L TLP  +V  G AE+IK         +    ++CE           D+ G ++          I    +L+      +  E GL  ++  GHT+              GHAI   + Y   L  +    G++   E   L A F  A +    +L  E
Sbjct:   71 GEAHKDWQTLNLIFDALLENRLDRRAVLVALGGGVIGDMTGFAAAVYMRGIRFVQVPTTLLAQVDSSVGGKTAVNHPLGKNMIGAFYQPVAVEIDTEVLGTLPAREVSAGLAEVIKYGLILDAGFW----QWCE-----------DNVGALRALEPRALAYAIRRSCELKAQVVGQDERESGLRAILNLGHTF--------------GHAIESGLGYGEWLHGEAVGCGMVQAAELSTLAAGFPAADVQRVRDLVRE 298          
BLAST of FC877945 vs. ExPASy Swiss-Prot
Match: AROB_BORPA (3-dehydroquinate synthase OS=Bordetella parapertussis GN=aroB PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.824e-12
Identity = 65/257 (25.29%), Postives = 104/257 (40.47%), Query Frame = 1
Query:   37 GEKAKSLDTFTNIVDSMTDFGIIRKEPXXXXXXXXXTDVAGFACAAYRRNTNYIRIPTTVIGLIDARVSIKVAVNYGNYKNRLGAYHAPAHTLLDFGFLRTLPEAQVRNGFAELIKISSCAHLPTFDLLDEFCERLIKTKFGRVSDHDGEIKKAADEINRNGIFEMLKLET----PNLHEIGLDRVIAYGHTWSPLHELAPPVPLRHGHAISIDMAYSATLANDR---GLLSDEEHRRLLALFSRAGLSMDHELFYE 786
            GE  K   T   I D++ +  + R+            D+ GFA A Y R   ++++PTT++  +D+ V  K AVN+   KN +GA++ P    +D   L TLP  +V  G AE+IK         +    ++CE           D+ G ++          I    +L+      +  E GL  ++  GHT+              GHAI   + Y   L  +    G++   E   L A F  A +    +L  E
Sbjct:   71 GEAHKDWQTLNLIFDALLENRLDRRAVLVALGGGVIGDMTGFAAAVYMRGIRFVQVPTTLLAQVDSSVGGKTAVNHPLGKNMIGAFYQPVAVEIDTEVLGTLPAREVSAGLAEVIKYGLILDAGFW----QWCE-----------DNVGALRALEPRALAYAIRRSCELKAQVVGQDERESGLRAILNLGHTF--------------GHAIESGLGYGEWLHGEAVGCGMVQAAELSTLAAGFPAADVQRVRDLVRE 298          
BLAST of FC877945 vs. ExPASy Swiss-Prot
Match: AROB_BORBR (3-dehydroquinate synthase OS=Bordetella bronchiseptica GN=aroB PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.824e-12
Identity = 65/257 (25.29%), Postives = 104/257 (40.47%), Query Frame = 1
Query:   37 GEKAKSLDTFTNIVDSMTDFGIIRKEPXXXXXXXXXTDVAGFACAAYRRNTNYIRIPTTVIGLIDARVSIKVAVNYGNYKNRLGAYHAPAHTLLDFGFLRTLPEAQVRNGFAELIKISSCAHLPTFDLLDEFCERLIKTKFGRVSDHDGEIKKAADEINRNGIFEMLKLET----PNLHEIGLDRVIAYGHTWSPLHELAPPVPLRHGHAISIDMAYSATLANDR---GLLSDEEHRRLLALFSRAGLSMDHELFYE 786
            GE  K   T   I D++ +  + R+            D+ GFA A Y R   ++++PTT++  +D+ V  K AVN+   KN +GA++ P    +D   L TLP  +V  G AE+IK         +    ++CE           D+ G ++          I    +L+      +  E GL  ++  GHT+              GHAI   + Y   L  +    G++   E   L A F  A +    +L  E
Sbjct:   71 GEAHKDWQTLNLIFDALLENRLDRRAVLVALGGGVIGDMTGFAAAVYMRGIRFVQVPTTLLAQVDSSVGGKTAVNHPLGKNMIGAFYQPVAVEIDTEVLGTLPAREVSAGLAEVIKYGLILDAGFW----QWCE-----------DNVGALRALEPRALAYAIRRSCELKAQVVGQDERESGLRAILNLGHTF--------------GHAIESGLGYGEWLHGEAVGCGMVQAAELSTLAAGFPAADVQRVRDLVRE 298          
BLAST of FC877945 vs. ExPASy Swiss-Prot
Match: AROB_BLOPB (3-dehydroquinate synthase OS=Blochmannia pennsylvanicus (strain BPEN) GN=aroB PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.824e-12
Identity = 58/245 (23.67%), Postives = 101/245 (41.22%), Query Frame = 1
Query:   37 GEKAKSLDTFTNIVDSMTDFGIIRKEPXXXXXXXXXTDVAGFACAAYRRNTNYIRIPTTVIGLIDARVSIKVAVNYGNYKNRLGAYHAPAHTLLDFGFLRTLPEAQVRNGFAELIKISSCAHLPTFDLLDEFCERLIKTKFGRVS---DHDGEIKKAADEINRNGIFEMLKLETPNLHEIGLDRVIAYGHTWS-PLHELAPPVPLRHGHAISIDMAYSATLANDRGLLSDEEHRRLLALFSRAGL 759
            GE+ KSL T   I   +      R             D+ GFA A Y+R   +I++PTT++  +DA +  K  +N+   KN +GA+H P   +++   L TL   +  +G AE+IK +       F  L+   + L+      +        E+K +   I+                + G+  V+  GHT+   +          HG +I+  +  +   A      +  + +R+  L +RAGL
Sbjct:   72 GEQNKSLITLDTIFTKLLKKNYDRSTILIGLGGGVIGDITGFAAATYQRGIRFIQVPTTLLAQVDASIGGKTGINHILGKNMIGAFHQPIAVIINLDVLHTLSMKEFSSGLAEIIKYAIALDSSFFGWLESHLDDLLILHLPSLMYCIRRCCELKASIIAIDE--------------RDQGIRSVLNLGHTYGHAIESYLGYSQWSHGESIAAGIMMAVNTALRLNQFNCSDAKRIKLLLTRAGL 302          
BLAST of FC877945 vs. ExPASy Swiss-Prot
Match: AROB_BACHK (3-dehydroquinate synthase OS=Bacillus thuringiensis subsp. konkukian GN=aroB PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.824e-12
Identity = 43/136 (31.62%), Postives = 71/136 (52.21%), Query Frame = 1
Query:   37 GEKAKSLDTFTNIVDSMTDFGIIRKEPXXXXXXXXXTDVAGFACAAYRRNTNYIRIPTTVIGLIDARVSIKVAVNYGNYKNRLGAYHAPAHTLLDFGFLRTLPEAQVRNGFAELIKISSCAHLPTFDLLDEFCERL 444
            GEK KS + F     S  +  + R             D+AGF  A++ R   ++++PTT++   D+ V  KVA+N+   KN +GA+H P   +    FL++LPE + R+G+AE+IK +    +  +  L E  + L
Sbjct:   73 GEKEKSFENFYAAHTSALENKLDRNSLIVALGGGMIGDLAGFVAASFMRGIRFVQVPTTLLAH-DSAVGGKVAINHPLGKNMIGAFHQPEAVVYHTPFLQSLPEKEWRSGYAEVIKHALIGDVKLYHWLKEEVQTL 207          
BLAST of FC877945 vs. ExPASy Swiss-Prot
Match: AROB_BACCZ (3-dehydroquinate synthase OS=Bacillus cereus (strain ZK / E33L) GN=aroB PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.824e-12
Identity = 43/136 (31.62%), Postives = 71/136 (52.21%), Query Frame = 1
Query:   37 GEKAKSLDTFTNIVDSMTDFGIIRKEPXXXXXXXXXTDVAGFACAAYRRNTNYIRIPTTVIGLIDARVSIKVAVNYGNYKNRLGAYHAPAHTLLDFGFLRTLPEAQVRNGFAELIKISSCAHLPTFDLLDEFCERL 444
            GEK KS + F     S  +  + R             D+AGF  A++ R   ++++PTT++   D+ V  KVA+N+   KN +GA+H P   +    FL++LPE + R+G+AE+IK +    +  +  L E  + L
Sbjct:   73 GEKEKSFENFYAAHTSALENKLDRNSLIVALGGGMIGDLAGFVAASFMRGIRFVQVPTTLLAH-DSAVGGKVAINHPLGKNMIGAFHQPEAVVYHTPFLQSLPEKEWRSGYAEVIKHALIGDVKLYHWLKEDVQTL 207          
BLAST of FC877945 vs. ExPASy Swiss-Prot
Match: AROB_BACCR (3-dehydroquinate synthase OS=Bacillus cereus (strain ATCC 14579 / DSM 31) GN=aroB PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.824e-12
Identity = 43/136 (31.62%), Postives = 71/136 (52.21%), Query Frame = 1
Query:   37 GEKAKSLDTFTNIVDSMTDFGIIRKEPXXXXXXXXXTDVAGFACAAYRRNTNYIRIPTTVIGLIDARVSIKVAVNYGNYKNRLGAYHAPAHTLLDFGFLRTLPEAQVRNGFAELIKISSCAHLPTFDLLDEFCERL 444
            GEK KS + F     S  +  + R             D+AGF  A++ R   ++++PTT++   D+ V  KVA+N+   KN +GA+H P   +    FL++LPE + R+G+AE+IK +    +  +  L E  + L
Sbjct:   73 GEKEKSFENFYAAHTSALENKLDRNSLILALGGGMIGDLAGFVAASFMRGIRFVQVPTTLLAH-DSAVGGKVAINHPLGKNMIGAFHQPEAVVYHTPFLQSLPEKEWRSGYAEVIKHALIGDVELYHWLKEEVQTL 207          
The following BLAST results are available for this feature:
BLAST of FC877945 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
AROB_BRASB2.928e-1223.873-dehydroquinate synthase OS=Bradyrhizobium sp. (s... [more]
AROB_BACCN2.928e-1235.343-dehydroquinate synthase OS=Bacillus cereus subsp... [more]
AROB_CHLFF3.824e-1224.243-dehydroquinate synthase OS=Chlamydophila felis (... [more]
AROB_BORPE3.824e-1225.293-dehydroquinate synthase OS=Bordetella pertussis ... [more]
AROB_BORPA3.824e-1225.293-dehydroquinate synthase OS=Bordetella parapertus... [more]
AROB_BORBR3.824e-1225.293-dehydroquinate synthase OS=Bordetella bronchisep... [more]
AROB_BLOPB3.824e-1223.673-dehydroquinate synthase OS=Blochmannia pennsylva... [more]
AROB_BACHK3.824e-1231.623-dehydroquinate synthase OS=Bacillus thuringiensi... [more]
AROB_BACCZ3.824e-1231.623-dehydroquinate synthase OS=Bacillus cereus (stra... [more]
AROB_BACCR3.824e-1231.623-dehydroquinate synthase OS=Bacillus cereus (stra... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA78AH03RM1 IVIA1 Citrus clementina cDNA clone IC0AAA78AH03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877945 ID=FC877945; Name=FC877945; organism=Citrus clementina; type=EST; length=881bp
CACCGTCTTGAATTGAAGATTCACCAGACAATGATCGGAGAGAAGGCCAA
GTCCTTGGATACGTTTACCAACATTGTGGACTCCATGACTGATTTTGGAA
TCATTCGGAAAGAGCCTGTTTTGGTTGTGGGCGGAGGACTAGTCACCGAC
GTTGCAGGATTTGCCTGCGCCGCCTATCGCCGCAACACCAATTACATCCG
TATCCCCACAACCGTTATTGGCCTGATCGACGCCCGTGTCAGTATCAAAG
TCGCTGTCAACTACGGCAACTACAAGAACCGACTCGGTGCCTACCATGCA
CCCGCGCACACCCTTCTTGATTTTGGTTTCTTGAGAACCTTGCCCGAGGC
TCAAGTTCGCAACGGGTTTGCCGAGCTCATCAAGATTTCGAGCTGTGCTC
ACTTGCCGACATTTGACTTGTTGGATGAGTTCTGTGAGCGGCTCATCAAG
ACCAAATTCGGGCGTGTCTCCGACCACGATGGAGAGATCAAGAAAGCTGC
CGACGAGATCAACCGGAACGGGATCTTTGAGATGTTGAAGCTCGAAACGC
CGAATCTGCATGAGATCGGCCTGGACCGAGTGATTGCGTATGGCCACACT
TGGTCGCCCCTTCACGAGCTCGCGCCCCCAGTTCCACTTCGCCACGGCCA
TGCCATTTCAATAGATATGGCTTATTCTGCCACTTTGGCGAATGACCGTG
GCCTTCTCAGTGATGAAGAGCACCGGAGATTGTTGGCTCTCTTTTCTCGT
GCAGGCCTCTCCATGGATCACGAACTTTTCTACGAAGAAATTCTGGATAA
AGCCACACAGTCATTTTGAGACCCGAGACGGGCTCTTGCGTGCAGCTGTG
CCAAGTCCACTAGGCAGCTGCAAGTTCTTGA
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