FC877945

Overview
NameFC877945
Unique NameFC877945
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length881
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC877945 vs. ExPASy Swiss-Prot
Match: AROB_DEHSB (3-dehydroquinate synthase OS=Dehalococcoides sp. (strain BAV1) GN=aroB PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.713e-20
Identity = 68/241 (28.22%), Postives = 115/241 (47.72%), Query Frame = 1
Query:   37 GEKAKSLDTFTNIVDSMTDFGIIRKEPXXXXXXXXXTDVAGFACAAYRRNTNYIRIPTTVIGLIDARVSIKVAVNYGNYKNRLGAYHAPAHTLLDFGFLRTLPEAQVRNGFAELIKISSCAHLPTFDLLDEFCERLIKTKFGRVSDHDGEIKKAADEINRNGIFEMLKLETPNLHEIGLDRVIAYGHTWSPLHELAPPVPLRHGHAISIDMAYSATLANDRGLLSDEEHRRLLALFSRAGL 759
            GE  K+LD   +I   + +    R  P          D++GF  A Y+R    I +PT+++  +D+ +  KVAVN+G  KN +G+++ P   + D G L+TLPE +   G AE+IK ++      F        R+++T    V D   E+ +  D I++    +   +   +  + G+  ++ +GHT     E        HG A++I M ++A L+   GL  +E   RL  L +  GL
Sbjct:   73 GEIHKTLDMAAHIYPQLINHFAERNTPILALGGGVIGDLSGFVAATYQRGVPLIHLPTSLLSQVDSSIGGKVAVNHGGVKNIVGSFYQPRLVIADTGCLKTLPEKEFACGMAEIIKSAAIGSSELF--------RMLETNTQAVKDRSPEVME--DIISQTAAIK-AGIVCQDETDRGIRNILNFGHTLGHALESTSSFSQSHGAAVAIGMCFAARLSVRLGLCENETALRLEKLIADFGL 302          
BLAST of FC877945 vs. ExPASy Swiss-Prot
Match: AROB_SULTO (3-dehydroquinate synthase OS=Sulfolobus tokodaii GN=aroB PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 2.237e-20
Identity = 64/223 (28.70%), Postives = 103/223 (46.19%), Query Frame = 1
Query:   37 GEKAKSLDTFTNIVDSMTDFGIIRKEPXXXXXXXXXTDVAGFACAAYRRNTNYIRIPTTVIGLIDARVSIKVAVNYGNYKNRLGAYHAPAHTLLDFGFLRTLPEAQVRNGFAELIKISSCAHLPTFDLLDEFCERLIKTKFGRVSDHDGEIKKAADE-INRNGIFEMLKLETPNLHEIGLDRVIAYGHTWSPLHELAPPVPLRHGHAISIDMAYSATLANDRG 702
            GE AK +     +V  + + G  R +          TDV GF  + Y R  N I IPTT++G++DA +  K  VN+ N KN LG ++ P   + D  FL TLP  +++ G AE+IK         +D L    E++             + + A +E I ++ + +   ++       G+  V+ +GHT     E      + HG+AIS+ M   A +A + G
Sbjct:   61 GEGAKDIQYALKLVKLLFENGFDRGDYVIALGGGTVTDVVGFVASIYMRGINLINIPTTLLGMVDAAIGGKTGVNFENVKNVLGTFYQPTMIISDLNFLETLPLEEIKKGLAEVIKYGLVLDKDLYDYLAMNKEKIF-----------AKDESALEEIIYKSSVDKFSVVKADERETKGIRIVLNFGHTIGHAIEAGSNFTVPHGYAISVGMVCEAKMAEEVG 272          
BLAST of FC877945 vs. ExPASy Swiss-Prot
Match: AROB_PROM0 (3-dehydroquinate synthase OS=Prochlorococcus marinus (strain MIT 9301) GN=aroB PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 2.237e-20
Identity = 72/244 (29.51%), Postives = 118/244 (48.36%), Query Frame = 1
Query:    1 HRLELKIHQTMIGEKAKSLDTFTNIVDSMTDFGIIRKEPXXXXXXXXXTDVAGFACAAYRRNTNYIRIPTTVIGLIDARVSIKVAVNYGNYKNRLGAYHAPAHTLLDFGFLRTLPEAQVRNGFAELIKISSCAHLPTFDLLDEFCERLIKTKFGRVSDHDGEIKKAADEINRNGIFEMLKLETPNLHEIGLDRVIAYGHTWSPLHE-LAPPVPLRHGHAISIDMAYSATLANDRGLLSDEEHRR 729
            ++ + K+     GE  K+L T + I D   +FG+ R             DV+GFA A + R   YI+IPTT++ ++D+ V  K  VN+   KN +GA++ P    +D   L++LP+ +   G AE+IK         F  L+     + K K   ++  +  + K    I  + I     + + + HE G+  ++ YGH++  + E L       HG AISI M  +  +A ++GL S EE  R
Sbjct:   65 NKFQAKMVLIKAGESYKNLKTLSEIYDVAFEFGLDRNSIIIALGGGIVGDVSGFAAATWLRGIEYIQIPTTLLSMVDSSVGGKTGVNHPKGKNLIGAFNQPKAVFIDPETLKSLPKREFSAGMAEVIKYGVIRDKELFKYLE-----IEKNKNELINLKNEYLIK----IINSSIKTKSHIVSQDEHENGVRAILNYGHSFGHVIENLCGYGKFLHGEAISIGMNIAGKIAIEKGLWSKEELER 299          
BLAST of FC877945 vs. ExPASy Swiss-Prot
Match: AROB_VIBHB (3-dehydroquinate synthase OS=Vibrio harveyi (strain ATCC BAA-1116 / BB120) GN=aroB PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.921e-20
Identity = 74/248 (29.84%), Postives = 117/248 (47.18%), Query Frame = 1
Query:   37 GEKAKSLDTFTNIVDSMTDFGIIRKEPXXXXXXXXXTDVAGFACAAYRRNTNYIRIPTTVIGLIDARVSIKVAVNYGNYKNRLGAYHAPAHTLLDFGFLRTLPEAQVRNGFAELIKISSCAHLPTFDLLDEFCERL-------IKTKFGRVSDHDGEIKKAADEINRNGIFEMLKLETPNLHEIGLDRVIAYGHTWSPLHELAPPVPLRHGHAISIDMAYSATLANDRGLLSDEEHRRLLALFSRAGL 759
            GE+ KSLDTF  +++ + +    R             D+ GFA A Y+R  ++I+IPTT++  +D+ V  K AVN+   KN +GA++ P   ++D   L TLPE +   G AE+IK         FD L+E  +RL       +     R  +   E+   A +   +GI  +L L     H I  +  + YG+ W             HG A+S     +A  ++ RGL+S E+  R++ +   A L
Sbjct:   76 GEQYKSLDTFNQVMNFLLEGSYARDVVIIALGGGVIGDLVGFASACYQRGVDFIQIPTTLLSQVDSSVGGKTAVNHPLGKNMIGAFYQPKAVIIDTNCLSTLPEREFAAGIAEVIKYGIIYDGAFFDWLEENLDRLYALDEEALTYAIARCCEIKAEV--VAQDEKESGIRALLNLGHTFGHAI--EAELGYGN-W------------LHGEAVSSGTVMAAKTSHLRGLISQEQLDRIINIMRSAKL 306          
BLAST of FC877945 vs. ExPASy Swiss-Prot
Match: AROB_PROMT (3-dehydroquinate synthase OS=Prochlorococcus marinus (strain NATL2A) GN=aroB PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 3.815e-20
Identity = 63/205 (30.73%), Postives = 101/205 (49.27%), Query Frame = 1
Query:  148 DVAGFACAAYRRNTNYIRIPTTVIGLIDARVSIKVAVNYGNYKNRLGAYHAPAHTLLDFGFLRTLPEAQVRNGFAELIKISSCAHLPTFDLLDEFCERLIKTKFGRVSDHDGEIKKAADEINRNGIFEMLKLETPNLHEIGLDRVIAYGHTWSPLHE-LAPPVPLRHGHAISIDMAYSATLANDRGLLSDEEHRRLLALFSRAGL 759
            D+ GFA A + R  N ++IPTT++ ++DA +  K  +N+   KN +GA+H P   L+D   L TLP  + + G AE+IK    + L  F+LL+         +   +SD     +K   EI +       ++   +  E G+   + YGHT+  + E L       HG A+++ M     LA  RGL  ++  +R   L  +AGL
Sbjct:  116 DMTGFAAATWLRGVNVVQIPTTLLAMVDASIGGKTGINHSKGKNLIGAFHQPRLVLIDPKTLITLPSREFKAGMAEIIKYGVISDLELFELLE---------RQENISDLSNIKEKLLIEIIKRSAKSKAEIVIKDEKESGVRAFLNYGHTFGHVIENLCGYGKWLHGEAVAMGMVAVGQLAVQRGLWKEDNAKRQKRLIEKAGL 311          
BLAST of FC877945 vs. ExPASy Swiss-Prot
Match: AROB_CORGL (3-dehydroquinate synthase OS=Corynebacterium glutamicum GN=aroB PE=3 SV=2)

HSP 1 Score: 98.9821 bits (245), Expect = 3.815e-20
Identity = 78/266 (29.32%), Postives = 124/266 (46.62%), Query Frame = 1
Query:   40 EKAKSLDTFTNIVDSMTDFGIIRKEPXXXXXXXXXTDVAGFACAAYRRNTNYIRIPTTVIGLIDARVSIKVAVNYGNYKNRLGAYHAPAHTLLDFGFLRTLPEAQVRNGFAELIKISSCAHLPTFDLLDEFCERLIKTKFGRVSDHDGEIKKAAD-----EINRNGIFEMLKLETPNLHEIGLDRVIAYGHTWSPLHELAPPVPLRHGHAISIDMAYSATLANDRGLLSD---EEHRRLLALFSRAGLSMDHE-LFYEEILDKATQ 810
            E  KSL+      D +      R++          TD+AGF  AA+ R    I++PTT++ ++DA V  K  +N    KN +GA+H P    +D   L TLP+A++  G AE+IK        T  + D    RL +T      D    +KK  +     E+    +     +   +L E  L  ++ YGHT++   EL      RHG+A+++ M + A L++  GL+     E HR +LA     GL   +E   ++E+ D  T+
Sbjct:   77 ENGKSLEVAGQCWDELGGAAFGRRDIVIGLGGGAATDLAGFVAAAWMRGVRVIQVPTTLLAMVDAAVGGKTGINTAAGKNLVGAFHEPDAVFIDTDRLATLPDAEIIAGSAEIIK--------TGFIADPEILRLYET------DPAACLKKEVEGSHLPELIWRSVTVKGSVVGQDLKESSLREILNYGHTFAHAVELRENFRWRHGNAVAVGMMFIANLSHKLGLIDAPLLERHRSILAAI---GLPTSYEGGAFDELYDGMTR 325          
BLAST of FC877945 vs. ExPASy Swiss-Prot
Match: AROB_COREF (3-dehydroquinate synthase OS=Corynebacterium efficiens GN=aroB PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 3.815e-20
Identity = 65/200 (32.50%), Postives = 99/200 (49.50%), Query Frame = 1
Query:  145 TDVAGFACAAYRRNTNYIRIPTTVIGLIDARVSIKVAVNYGNYKNRLGAYHAPAHTLLDFGFLRTLPEAQVRNGFAELIKISSCAHLPTFDLLDEFCERLIKTKFGRVSDHDGEIKKAADEINRNGIFEMLKLETPNLHEIGLDRVIAYGHTWSPLHELAPPVPLRHGHAISIDMAYSATLANDRGLLSD---EEHRRLL 735
            TD+AGF  AA+ R    I++PTTV+G++DA V  K  +N    KN +GA+H P    +D   L TLP+ ++  G AE+IK    A      L +      ++ +      H  E+   A  +   G      L+  NL EI     + YGHT++   EL      RHG+A+++ M + A L+ + GL+     E HR +L
Sbjct:  112 TDLAGFVAAAWMRGVRVIQVPTTVLGMVDAAVGGKTGINTAAGKNLVGAFHEPDAVFIDLDRLHTLPDEEIIAGSAEIIKTGFIADEEILRLYESDASACLQREID--GSHLPEL--IARSVRVKGSVVSADLKESNLREI-----LNYGHTFAHAVELREDFQWRHGNAVAVGMMFIANLSYNLGLIDADLLERHRVIL 302          
BLAST of FC877945 vs. ExPASy Swiss-Prot
Match: AROB_CAMJD (3-dehydroquinate synthase OS=Campylobacter jejuni subsp. doylei (strain ATCC BAA-1458 / RM4099 / 269.97) GN=aroB PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 3.815e-20
Identity = 74/275 (26.91%), Postives = 132/275 (48.00%), Query Frame = 1
Query:   10 ELKIHQTMIGEKAKSLDTFTNIVDSMTDFGIIRKEPXXXXXXXXXTDVAGFACAAYRRNTNYIRIPTTVIGLIDARVSIKVAVNYGNYKNRLGAYHAPAHTLLDFGFLRTLPEAQVRNGFAELIKISSCAHLPTFDLLDEFCERLIKTKFGRVSDHDGEIKKAADEINRNGIFEMLKLETPNLHEIGLDRVIAYGHTWSPLHELAPPVPL-RHGHAISIDMAYSATLANDRGLLSDEEHRRLLALFSRAGLSMDHEL-----FYEE-ILDKATQS 813
            E+ I     GE+ K+L T   I+  M +  + RK           +D+ GFA + Y+R  ++I IPTT++  +DA V  K  VN    KN +G ++ P     +  FL+TL   ++  G AE IK+++       D + +F E++ +  F   +  +    +   +I    I    ++   +  E GL  ++ YGHT++ + E      L  HG A++I M  +  LA + GLL   + +R+  +  + GL + +++     FYE   +DK + +
Sbjct:   52 EISIATVKDGEEYKNLSTMEEILSQMFNSKLDRKSVLISFGGGVISDMGGFAASIYQRGIDFINIPTTLLACVDAAVGGKTGVNNNFGKNLIGTFYQPKAVYCESSFLKTLSSRELAAGMAEFIKMAAIFD----DSMLDFIEKIDEKSFLNATCEN----EIFTQIIAKSIELKARVVEQDEKESGLRMLLNYGHTFAHVIENFTDYKLYLHGEAVAIGMVMANQLALNLGLLDKMQSQRIKDILLKFGLPISYKINSVDEFYEAFFMDKKSSN 318          
BLAST of FC877945 vs. ExPASy Swiss-Prot
Match: AROB_DICNV (3-dehydroquinate synthase OS=Dichelobacter nodosus (strain VCS1703A) GN=aroB PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 4.983e-20
Identity = 71/257 (27.63%), Postives = 125/257 (48.64%), Query Frame = 1
Query:   37 GEKAKSLDTFTNIVDSMTDFGIIRKEPXXXXXXXXXTDVAGFACAAYRRNTNYIRIPTTVIGLIDARVSIKVAVNYGNYKNRLGAYHAPAHTLLDFGFLRTLPEAQVRNGFAELIKISSCAHLPTFDLLDEFCERLIKTKFGRVSDHDGEIKKAADEINRNGIFEMLKLETPNLHEIGLDRVIAYGHTWSPLHELAPPVPLR---HGHAISIDMAYSATLANDRGLLSDEEHRRLLALFSRAGL--SMDHELFYEEI 792
            GE  K+L T+ +I+ ++ +  + R             D+ GF  A Y+R   +I  PTT++  +DA V  K  VN+   KN +GA++ P   L+D   L TLP  +   G AE+IK +    +     L++  + +++ +           K + + +  N      ++   +  E G+  ++ +GHT+   H L      R   HG A++I M  +A L+  RGL+S +E  R+++L  RA L  ++D +L  E+I
Sbjct:   72 GECHKNLATYQHILTTLLEAHLGRDGLLIALGGGVINDITGFVAATYQRGICWITFPTTLLAQVDAAVGGKTGVNHACGKNMIGAFYPPQAVLMDTATLSTLPPREFSAGLAEVIKYALIYDISFLSWLEQHMDAVLRKE-----------KISLENMIMNCCRYKSEIVCADEREQGMRALLNFGHTFG--HALETITAYRHWLHGEAVAIGMRMAAELSEMRGLISADEKARVISLLQRAHLPTAIDIQLNCEDI 315          
BLAST of FC877945 vs. ExPASy Swiss-Prot
Match: AROB_CORGB (3-dehydroquinate synthase OS=Corynebacterium glutamicum (strain R) GN=aroB PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 4.983e-20
Identity = 78/266 (29.32%), Postives = 124/266 (46.62%), Query Frame = 1
Query:   40 EKAKSLDTFTNIVDSMTDFGIIRKEPXXXXXXXXXTDVAGFACAAYRRNTNYIRIPTTVIGLIDARVSIKVAVNYGNYKNRLGAYHAPAHTLLDFGFLRTLPEAQVRNGFAELIKISSCAHLPTFDLLDEFCERLIKTKFGRVSDHDGEIKKAAD-----EINRNGIFEMLKLETPNLHEIGLDRVIAYGHTWSPLHELAPPVPLRHGHAISIDMAYSATLANDRGLLSD---EEHRRLLALFSRAGLSMDHE-LFYEEILDKATQ 810
            E  KSL+      D +      R++          TD+AGF  AA+ R    I++PTT++ ++DA V  K  +N    KN +GA+H P    +D   L TLP+A++  G AE+IK        T  + D    RL +T      D    +KK  +     E+    +     +   +L E  L  ++ YGHT++   EL      RHG+A+++ M + A L++  GL+     E HR +LA     GL   +E   ++E+ D  T+
Sbjct:   77 ENGKSLEVAGQCWDELGGAAFGRRDIVIGLGGGAATDLAGFVAAAWMRGVRVIQVPTTLLAMVDAAVGGKTGINTAAGKNLVGAFHEPDAVFIDTERLATLPDAEIIAGSAEIIK--------TGFIADPEILRLYET------DPAACLKKEVEGSHLPELIWRSVTVKGSVVGQDLKESSLREILNYGHTFAHAVELRENFRWRHGNAVAVGMMFIANLSHKLGLIDAPLLERHRSILAAI---GLPTSYEGGAFDELYDGMTR 325          
The following BLAST results are available for this feature:
BLAST of FC877945 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
AROB_DEHSB1.713e-2028.223-dehydroquinate synthase OS=Dehalococcoides sp. (... [more]
AROB_SULTO2.237e-2028.703-dehydroquinate synthase OS=Sulfolobus tokodaii G... [more]
AROB_PROM02.237e-2029.513-dehydroquinate synthase OS=Prochlorococcus marin... [more]
AROB_VIBHB2.921e-2029.843-dehydroquinate synthase OS=Vibrio harveyi (strai... [more]
AROB_PROMT3.815e-2030.733-dehydroquinate synthase OS=Prochlorococcus marin... [more]
AROB_CORGL3.815e-2029.323-dehydroquinate synthase OS=Corynebacterium gluta... [more]
AROB_COREF3.815e-2032.503-dehydroquinate synthase OS=Corynebacterium effic... [more]
AROB_CAMJD3.815e-2026.913-dehydroquinate synthase OS=Campylobacter jejuni ... [more]
AROB_DICNV4.983e-2027.633-dehydroquinate synthase OS=Dichelobacter nodosus... [more]
AROB_CORGB4.983e-2029.323-dehydroquinate synthase OS=Corynebacterium gluta... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA78AH03RM1 IVIA1 Citrus clementina cDNA clone IC0AAA78AH03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877945 ID=FC877945; Name=FC877945; organism=Citrus clementina; type=EST; length=881bp
CACCGTCTTGAATTGAAGATTCACCAGACAATGATCGGAGAGAAGGCCAA
GTCCTTGGATACGTTTACCAACATTGTGGACTCCATGACTGATTTTGGAA
TCATTCGGAAAGAGCCTGTTTTGGTTGTGGGCGGAGGACTAGTCACCGAC
GTTGCAGGATTTGCCTGCGCCGCCTATCGCCGCAACACCAATTACATCCG
TATCCCCACAACCGTTATTGGCCTGATCGACGCCCGTGTCAGTATCAAAG
TCGCTGTCAACTACGGCAACTACAAGAACCGACTCGGTGCCTACCATGCA
CCCGCGCACACCCTTCTTGATTTTGGTTTCTTGAGAACCTTGCCCGAGGC
TCAAGTTCGCAACGGGTTTGCCGAGCTCATCAAGATTTCGAGCTGTGCTC
ACTTGCCGACATTTGACTTGTTGGATGAGTTCTGTGAGCGGCTCATCAAG
ACCAAATTCGGGCGTGTCTCCGACCACGATGGAGAGATCAAGAAAGCTGC
CGACGAGATCAACCGGAACGGGATCTTTGAGATGTTGAAGCTCGAAACGC
CGAATCTGCATGAGATCGGCCTGGACCGAGTGATTGCGTATGGCCACACT
TGGTCGCCCCTTCACGAGCTCGCGCCCCCAGTTCCACTTCGCCACGGCCA
TGCCATTTCAATAGATATGGCTTATTCTGCCACTTTGGCGAATGACCGTG
GCCTTCTCAGTGATGAAGAGCACCGGAGATTGTTGGCTCTCTTTTCTCGT
GCAGGCCTCTCCATGGATCACGAACTTTTCTACGAAGAAATTCTGGATAA
AGCCACACAGTCATTTTGAGACCCGAGACGGGCTCTTGCGTGCAGCTGTG
CCAAGTCCACTAGGCAGCTGCAAGTTCTTGA
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