FC877945

Overview
NameFC877945
Unique NameFC877945
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length881
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC877945 vs. ExPASy Swiss-Prot
Match: AROB_PROAC (3-dehydroquinate synthase OS=Propionibacterium acnes GN=aroB PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.894e-19
Identity = 73/250 (29.20%), Postives = 112/250 (44.80%), Query Frame = 1
Query:   10 ELKIHQTMIGEKAKSLDTFTNIVDSMTDFGIIRKEPXXXXXXXXXTDVAGFACAAYRRNTNYIRIPTTVIGLIDARVSIKVAVNYGNYKNRLGAYHAPAHTLLDFGFLRTLPEAQVRNGFAELIKISSCAHLPTFDLLDEFCERLIKTKFGRVSDHDGEIKKAADEINRNGIFEMLKLETPNLHEIGLDRVIAYGHTWSPLHELAPPVPLRHGHAISIDMAYSATLANDRGLLSDEEHRRLLALFSRAGL 759
            +L + +    E AK+ +   N    + +  + R +          TDVAGF  A + R  + I +PTTV+ + DA +  K  VN    KN +GA+H P   L D   L TLP  +VR+G AE++K   C  +    +LD       +      S    E+   A  +    +   L   T +  E+G +R + YGHT +   E       RHG A ++ M ++A L++    LSDE   R   + S  GL
Sbjct:   52 DLVVIEVPDAEAAKTPEVLVNGWRRLAEANMTRGDIIVGFGGGATTDVAGFLAATWMRGIDVIHVPTTVLAMADAAIGGKTGVNIPAGKNLVGAFHEPIGVLCDTELLTTLPAREVRSGLAEIVK---CGFIKDPVILDVISNH-PRLALDVTSQTFVEVLTRAITVKAGVVSADLHERTSSREEVGRER-LNYGHTLAHAIEAHKHFTWRHGEADAVGMVFAAELSHRYLGLSDEVVARTRTILSEIGL 296          
BLAST of FC877945 vs. ExPASy Swiss-Prot
Match: AROB_DEHE1 (3-dehydroquinate synthase OS=Dehalococcoides ethenogenes (strain 195) GN=aroB PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.894e-19
Identity = 68/255 (26.67%), Postives = 122/255 (47.84%), Query Frame = 1
Query:   37 GEKAKSLDTFTNIVDSMTDFGIIRKEPXXXXXXXXXTDVAGFACAAYRRNTNYIRIPTTVIGLIDARVSIKVAVNYGNYKNRLGAYHAPAHTLLDFGFLRTLPEAQVRNGFAELIKISSCAHLPTFDLLDEFCERLIKTKFGRVSDHDGEIKKAADEINRNGIFEMLKLETPNLHEIGLDRVIAYGHTWSPLHELAPPVPLRHGHAISIDMAYSATLANDRGLLSDEEHRRLLALFSRAGL-SMDHELFYEEILD 798
            GE  KSLD  ++I   + +    R  P          D++GF  A Y+R    + +PT+++  +D+ +  KVAVN+G  KN +G+++ P   + D   L+TLPE +   G AE+IK ++      F        + ++T    + D   EI +  D I++    +   +   +  + G+  ++ +GHT     E        HG A++I M +++ L+   GL  +E   RL  L +  GL +   ++  E+I+D
Sbjct:   73 GEIHKSLDMASHIYPQLINHFAERNTPILALGGGVIGDLSGFVAATYQRGVPLVHLPTSLLSQVDSSIGGKVAVNHGGIKNIVGSFYQPRLVISDISCLKTLPEKEFACGMAEIIKSAAIGSSELF--------KQLETNTPAIKDRSPEIME--DIISQTAAIK-AGIVCQDETDRGIRNILNFGHTLGHALESTSSFSQSHGAAVAIGMCFASRLSVKLGLCENETVLRLEKLIADFGLPTRPQDIDPEKIID 316          
BLAST of FC877945 vs. ExPASy Swiss-Prot
Match: AROB_ANAVT (3-dehydroquinate synthase OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=aroB PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.894e-19
Identity = 68/246 (27.64%), Postives = 118/246 (47.97%), Query Frame = 1
Query:   37 GEKAKSLDTFTNIVDSMTDFGIIRKEPXXXXXXXXXTDVAGFACAAYRRNTNYIRIPTTVIGLIDARVSIKVAVNYGNYKNRLGAYHAPAHTLLDFGFLRTLPEAQVRNGFAELIKISSCAHLPTFDLLDEFCERLIKTKFGRVSDHDGEIKKA----ADEINRNGIFEMLKLETPNLHEIGLDRVIAYGHT-WSPLHELAPPVPLRHGHAISIDMAYSATLANDRGLLSDEEHRRLLALFSRAGL 759
            GE+ K+L++   + D   +  + R             D+ GFA A + R  N +++PTT++ ++D+ +  K  VN+ + KN +GA+H P   L+D   L+TLP  + R G AE+IK         F+ L++  +RL + ++ +    D  + ++    AD + ++              E GL  ++ YGHT    +  L     L+HG A+ I M  +  +A + GL    +  R  AL  +AGL
Sbjct:   74 GERYKTLNSIQKLYDIALENRLERSSTMVALGGGVIGDMTGFAAATWLRGINVVQVPTTLLAMVDSAIGGKTGVNHPHGKNLIGAFHQPRFVLIDPQVLKTLPVREFRAGMAEVIKYGVIWDAELFNQLEQ-SKRLDQLRYIKPELMDAILTRSCQAKADVVGKDE------------KEGGLRAILNYGHTVGHAVESLTNYRLLKHGEAVGIGMVAAGQIAVNLGLWQQADADRQNALIEKAGL 306          
BLAST of FC877945 vs. ExPASy Swiss-Prot
Match: AROB_RHOOB (3-dehydroquinate synthase OS=Rhodococcus opacus (strain B4) GN=aroB PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.473e-19
Identity = 61/218 (27.98%), Postives = 101/218 (46.33%), Query Frame = 1
Query:   97 GIIRKEPXXXXXXXXXTDVAGFACAAYRRNTNYIRIPTTVIGLIDARVSIKVAVNYGNYKNRLGAYHAPAHTLLDFGFLRTLPEAQVRNGFAELIKISSCAHLPTFDLLDEFCERLIKTKFGRVSDHDGEIKKAADEINRNGIFEMLKLETPNLHEIGLDRVIAYGHTWSPLHELAPPVPLRHGHAISIDMAYSATLANDRGLLSD---EEHRRLLAL 741
            G+ R +          TD+AGF  A + R    I +PTT++ ++DA V  K  +N    KN +G++H P+  L+D   L T+P  ++  G AE++K    A     +L+++  E  +        D  G +     E+ R  +    K+   +L E  L  ++ YGHT     E       RHG A+++ + ++A L    G L D   + HR +L L
Sbjct:   91 GLTRSDAVVSLGGGAATDLAGFVAATWMRGVRVIHVPTTLLAMVDAAVGGKTGINTEAGKNLVGSFHEPSAVLIDLATLETVPRNEIVAGMAEVVKTGFIADPVILELIEKDPEAAL--------DPTGTV---LPELIRRSVEVKAKVVAADLRESDLREILNYGHTLGHAIERRERYRWRHGAAVAVGLVFAAELGRLAGRLDDATADRHRTILEL 297          
BLAST of FC877945 vs. ExPASy Swiss-Prot
Match: AROB_RALPJ (3-dehydroquinate synthase OS=Ralstonia pickettii (strain 12J) GN=aroB PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.473e-19
Identity = 69/242 (28.51%), Postives = 106/242 (43.80%), Query Frame = 1
Query:   37 GEKAKSLDTFTNIVDSMTDFGIIRKEPXXXXXXXXXTDVAGFACAAYRRNTNYIRIPTTVIGLIDARVSIKVAVNYGNYKNRLGAYHAPAHTLLDFGFLRTLPEAQVRNGFAELIKISSCAHLPTFDLLDEFCERLIKTKFGRVSDHDGEIKKAADEINRNGIFEMLKLETPNLHEIGLDRVIAYGHTWSPLHELAPPV-PLRHGHAISIDMAYSATLANDRGLLSDEEHRRLLALFSRAGL 759
            GE  K  DT   I D++   G  RK            D+ GFA A Y R   +I++PTT++  +D+ V  K  +N+   KN +GA+H P   L D   LRTLP  ++  G AE+IK  + A    F  +++    L        +D D ++     E  R  +     +   +  E GL   + +GHT+    E         HG A+   M  +A L++  G +  +   R+ AL   A L
Sbjct:   72 GESFKKWDTLNRIFDALLTAGADRKTTLIALGGGVIGDMTGFAAACYMRGVPFIQVPTTLLSQVDSSVGGKTGINHPLGKNMIGAFHQPQAVLADIDTLRTLPARELAAGMAEVIKHGAIADADYFAWIEQNIRGL--------NDCDTDL---MTEAVRGSVRIKAAVVAQDERETGLRATLNFGHTFGHAIEAGLGYGEWLHGEAVGCGMVMAADLSHRLGFIDIDTRNRITALTCAADL 302          
BLAST of FC877945 vs. ExPASy Swiss-Prot
Match: AROB_PYRIL (3-dehydroquinate synthase OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=aroB PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.473e-19
Identity = 66/265 (24.91%), Postives = 117/265 (44.15%), Query Frame = 1
Query:   37 GEKAKSLDTFTNIVDSMTDFGIIRKEPXXXXXXXXXTDVAGFACAAYRRNTNYIRIPTTVIGLIDARVSIKVAVNYGNYKNRLGAYHAPAHTLLDFGFLRTLPEAQVRNGFAELIKISSCAHLPTFDLLDEFCERLIKTKFGRVSDHDGEIKKAADEINRNGIFEMLKLETPNLHEIGLDRVIAYGHTWSPLHELAPPVPLRHGHAISIDMAYSATLANDRGLLSDEEHRRLLALFSRAGLSMDHELFYEEILDKATQSF*DPRR 831
            GE+ KSL+  T +   + + G  R             D+A FA   Y R    + IPTT++ ++DA +  K AV++G  KN +G ++ PA  L D  +L TLPE   R+ FAE++K         +  + E  + L+   +G +             + R+   +   +E     E G+ +V+  GHT    H +   + L HG A+++ +     L+++ G L +        + S  GL    +   +++ + A     D +R
Sbjct:   53 GEEVKSLEVLTKVYSFLKEVGADRSTTLVAVGGGALLDLATFAAGTYMRGIRLVHIPTTLLAMVDAALGGKGAVDWGPVKNLVGVFYQPAAILCDLSWLETLPERVYRSAFAEVVKYGLALDGDFYSWVRENAKALLARDWGALE----------YAVYRSLQLKAGVVEVDEFEERGIRQVLNVGHTVG--HAVERVLGLLHGEAVAVGIVAELRLSSELGYLRESHVAEAAEVLSSLGLPTSVKATEQQLAEAAALVKFDKKR 305          
BLAST of FC877945 vs. ExPASy Swiss-Prot
Match: AROB_PYRFU (3-dehydroquinate synthase OS=Pyrococcus furiosus GN=aroB PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.473e-19
Identity = 69/242 (28.51%), Postives = 116/242 (47.93%), Query Frame = 1
Query:   37 GEKAKSLDTFTNIVDSMTDFGIIRKEPXXXXXXXXXTDVAGFACAAYRRNTNYIRIPTTVIGLIDARVSIKVAVN-YGNYKNRLGAYHAPAHTLLDFGFLRTLPEAQVRNGFAELIKISSCAHLPTFDLLDEFCERLIKTKFGRVSDHDGEIKKAADEINRNGIFEMLKLETPNLHEIGLDRVIAYGHTWSPLHELAPPVPLRHGHAISIDMAYSATLANDRGLLSDEEHRRLLALFSRAGL 759
            GEK K LDT   I + + + G  R+           TD+AGF  + Y R T    +PTT++  +DA +  K  +N YG  KN +G ++ P   L+   FL+TLP  ++ NG AE++K         + +LD+     IKT      +   EI +  D I ++ +   L++   +L E G  RV+  GHT     E      ++HG A+S+ +   A +     +L   +  +++ + ++ GL
Sbjct:   57 GEKYKDLDTVRYIWEKLLEMGFTRRSLLIGLGGGVITDIAGFVASTYMRGTYLGLVPTTLLAQVDAAIGGKTGINFYG--KNIIGTFYLPKFVLICRDFLKTLPMVEILNGLAEVVK---------YGILDKEVYNAIKT-----MNSPREIVEREDIIKKS-VAVKLRIVEEDLKENGKRRVLNLGHTVGHAIEKISDYKIKHGFAVSMGLVVEAKIGE---ILYGFDSGKVVEILTKFGL 278          
BLAST of FC877945 vs. ExPASy Swiss-Prot
Match: AROB_HELPY (3-dehydroquinate synthase OS=Helicobacter pylori GN=aroB PE=1 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.473e-19
Identity = 76/276 (27.54%), Postives = 132/276 (47.83%), Query Frame = 1
Query:    7 LELKIHQTMIGEKAKSLDTFTNIVDSMTDFGIIRKEPXXXXXXXXXTDVAGFACAAYRRNTNYIRIPTTVIGLIDARVSIKVAVNYGNYKNRLGAYHAPAHTLLDFGFLRTLPEAQVRNGFAELIKISSCAHLPTFDLLDEFCERLIKTKFGRVSDHDGEIKKAADEINRNGIFEMLKLETPNLHEIGLDRVIAYGHTWSPLHELAPPVP-LRHGHAISIDMAYSATLANDRGLLSDEEHRRLLALFSRAGL-----SMDHELFYEEI-LDKATQS 813
            LE+++     GEK K+  +   I+++  +  + R            +D+ GFA + Y R  ++I IPTT++  +DA V  K  +N    KN +G++H P    +D  FL+TL + + + G AE+IK++ C     FD      ERL +TK         ++K   +E+    +    ++   +  E  +   + YGHT+    E         HG AI+I M  +  LA   G+L+ +E+ R+  L  +  L      +D + FYE + LDK +++
Sbjct:   52 LEVRVCVIESGEKYKNFHSLERILNNAFEMQLNRHSLMIALGGGVISDMVGFASSIYFRGIDFINIPTTLLAQVDASVGGKTGINTPYGKNLIGSFHQPKAVYMDLAFLKTLEKREFQAGVAEIIKMAVC-----FD--KNLVERL-ETK---------DLKDCLEEVIFQSVNIKAQVVVQDEKEQNIRAGLNYGHTFGHAIEKETDYERFLHGEAIAIGMRMANDLALSLGMLTLKEYERIENLLKKFDLIFHYKILDLQKFYERLFLDKKSEN 310          
BLAST of FC877945 vs. ExPASy Swiss-Prot
Match: AROB_HELPG (3-dehydroquinate synthase OS=Helicobacter pylori (strain G27) GN=aroB PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.473e-19
Identity = 76/276 (27.54%), Postives = 132/276 (47.83%), Query Frame = 1
Query:    7 LELKIHQTMIGEKAKSLDTFTNIVDSMTDFGIIRKEPXXXXXXXXXTDVAGFACAAYRRNTNYIRIPTTVIGLIDARVSIKVAVNYGNYKNRLGAYHAPAHTLLDFGFLRTLPEAQVRNGFAELIKISSCAHLPTFDLLDEFCERLIKTKFGRVSDHDGEIKKAADEINRNGIFEMLKLETPNLHEIGLDRVIAYGHTWSPLHELAPPVP-LRHGHAISIDMAYSATLANDRGLLSDEEHRRLLALFSRAGL-----SMDHELFYEEI-LDKATQS 813
            LE+++     GEK K+  +   I+++  +  + R            +D+ GFA + Y R  ++I IPTT++  +DA V  K  +N    KN +G++H P    +D  FL+TL + + + G AE+IK++ C     FD      ERL +TK         ++K   +E+    +    ++   +  E  +   + YGHT+    E         HG AI+I M  +  LA   G+L+ +E+ R+  L  +  L      +D + FYE + LDK +++
Sbjct:   52 LEVRVCVIESGEKYKNFHSLERILNNAFEMQLNRHSLMIALGGGVISDMVGFASSIYFRGIDFINIPTTLLAQVDASVGGKTGINTPYGKNLIGSFHQPKAVYIDLSFLKTLEKREFQAGVAEIIKMAVC-----FD--KNLVERL-ETK---------DLKDCLEEVVFQSVNIKAQVVVQDEKERNIRAGLNYGHTFGHAIEKETDYERFLHGEAIAIGMCMANDLALSLGMLTLKEYERIENLLKKFDLIFHYKIIDLQKFYERLFLDKKSEN 310          
BLAST of FC877945 vs. ExPASy Swiss-Prot
Match: AROB_GEOSM (3-dehydroquinate synthase OS=Geobacter sp. (strain M21) GN=aroB PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.473e-19
Identity = 66/249 (26.51%), Postives = 112/249 (44.98%), Query Frame = 1
Query:   37 GEKAKSLDTFTNIVDSMTDFGIIRKEPXXXXXXXXXTDVAGFACAAYRRNTNYIRIPTTVIGLIDARVSIKVAVNYGNYKNRLGAYHAPAHTLLDFGFLRTLPEAQVRNGFAELIKISSCAHLPTFDLLDEFCERLIKTKFGRVSDHDGEIKKAADEINRNGIFEMLKLETPNLHEIGLDRVIAYGHTWS-PLHELAPPVPLRHGHAISIDMAYSATLANDRGLLSDEEHRRLLALFSRAGLSMDHELF 780
            GE  K+  T   I D + D  + R             D+AGFA A+Y R   +++IPTT++  +D+ V  K  +N+   KN +G+++ P   L+D   L TLPE +  +G  E++K  +      FD L++  + L+              K+A  +          K+   +  E G+  V+ +GHT    +  L       HG A++I M  +A ++   G  S  +  R+ AL    GL ++  +F
Sbjct:   75 GEGYKNSATLNLIYDGLVDASLDRGSFILALGGGVIGDMAGFAAASYLRGIPFVQIPTTLLSQVDSSVGGKTGINHPRGKNLIGSFYQPKAVLIDVATLDTLPEREFLSGLGEIVKYGAVLDGGFFDFLEQNAKLLL-----------ARDKEALIQAVSRSCAIKAKVVAEDEREGGVRAVLNFGHTLGHAVETLTGYTRYLHGEAVAIGMVQAARISQHYGFCSQADRERIEALIVALGLPIELPIF 312          
The following BLAST results are available for this feature:
BLAST of FC877945 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
AROB_PROAC1.894e-1929.203-dehydroquinate synthase OS=Propionibacterium acn... [more]
AROB_DEHE11.894e-1926.673-dehydroquinate synthase OS=Dehalococcoides ethen... [more]
AROB_ANAVT1.894e-1927.643-dehydroquinate synthase OS=Anabaena variabilis (... [more]
AROB_RHOOB2.473e-1927.983-dehydroquinate synthase OS=Rhodococcus opacus (s... [more]
AROB_RALPJ2.473e-1928.513-dehydroquinate synthase OS=Ralstonia pickettii (... [more]
AROB_PYRIL2.473e-1924.913-dehydroquinate synthase OS=Pyrobaculum islandicu... [more]
AROB_PYRFU2.473e-1928.513-dehydroquinate synthase OS=Pyrococcus furiosus G... [more]
AROB_HELPY2.473e-1927.543-dehydroquinate synthase OS=Helicobacter pylori G... [more]
AROB_HELPG2.473e-1927.543-dehydroquinate synthase OS=Helicobacter pylori (... [more]
AROB_GEOSM2.473e-1926.513-dehydroquinate synthase OS=Geobacter sp. (strain... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA78AH03RM1 IVIA1 Citrus clementina cDNA clone IC0AAA78AH03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877945 ID=FC877945; Name=FC877945; organism=Citrus clementina; type=EST; length=881bp
CACCGTCTTGAATTGAAGATTCACCAGACAATGATCGGAGAGAAGGCCAA
GTCCTTGGATACGTTTACCAACATTGTGGACTCCATGACTGATTTTGGAA
TCATTCGGAAAGAGCCTGTTTTGGTTGTGGGCGGAGGACTAGTCACCGAC
GTTGCAGGATTTGCCTGCGCCGCCTATCGCCGCAACACCAATTACATCCG
TATCCCCACAACCGTTATTGGCCTGATCGACGCCCGTGTCAGTATCAAAG
TCGCTGTCAACTACGGCAACTACAAGAACCGACTCGGTGCCTACCATGCA
CCCGCGCACACCCTTCTTGATTTTGGTTTCTTGAGAACCTTGCCCGAGGC
TCAAGTTCGCAACGGGTTTGCCGAGCTCATCAAGATTTCGAGCTGTGCTC
ACTTGCCGACATTTGACTTGTTGGATGAGTTCTGTGAGCGGCTCATCAAG
ACCAAATTCGGGCGTGTCTCCGACCACGATGGAGAGATCAAGAAAGCTGC
CGACGAGATCAACCGGAACGGGATCTTTGAGATGTTGAAGCTCGAAACGC
CGAATCTGCATGAGATCGGCCTGGACCGAGTGATTGCGTATGGCCACACT
TGGTCGCCCCTTCACGAGCTCGCGCCCCCAGTTCCACTTCGCCACGGCCA
TGCCATTTCAATAGATATGGCTTATTCTGCCACTTTGGCGAATGACCGTG
GCCTTCTCAGTGATGAAGAGCACCGGAGATTGTTGGCTCTCTTTTCTCGT
GCAGGCCTCTCCATGGATCACGAACTTTTCTACGAAGAAATTCTGGATAA
AGCCACACAGTCATTTTGAGACCCGAGACGGGCTCTTGCGTGCAGCTGTG
CCAAGTCCACTAGGCAGCTGCAAGTTCTTGA
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