FC877945

Overview
NameFC877945
Unique NameFC877945
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length881
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC877945 vs. ExPASy Swiss-Prot
Match: AROB_THENV (3-dehydroquinate synthase OS=Thermoproteus neutrophilus (strain DSM 2338 / JCM 9278 / V24Sta) GN=aroB PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 3.230e-19
Identity = 69/265 (26.04%), Postives = 118/265 (44.53%), Query Frame = 1
Query:   37 GEKAKSLDTFTNIVDSMTDFGIIRKEPXXXXXXXXXTDVAGFACAAYRRNTNYIRIPTTVIGLIDARVSIKVAVNYGNYKNRLGAYHAPAHTLLDFGFLRTLPEAQVRNGFAELIKISSCAHLPTFDLLDEFCERLIKTKFGRVSDHDGEIKKAADEINRNGIFEMLKLETPNLHEIGLDRVIAYGHTWSPLHELAPPVPLRHGHAISIDMAYSATLANDRGLLSDEEHRRLLALFSRAGLSMDHELFYEEILDKATQSF*DPRR 831
            GE+ KSL+  T +   + + G  R             D+A FA   Y R    + IPTT++ ++DA +  K AV++G  KN +G ++ PA  L D  +L TLPE   R+ FAE++K         +  + E  + L+          DG   + A  + R+   +   +E     E G+ +V+  GHT    H +   + L HG A+++ M     L+++ G L +        + S  GL    +   +++ + A     D +R
Sbjct:   53 GEEVKSLEVLTKVYGFLKEVGADRSTTLVAVGGGALLDLATFAAGTYMRGIRLVHIPTTLLAMVDAALGGKGAVDWGPVKNLIGVFYQPAAILCDLSWLGTLPERVYRSAFAEVVKYGLALDGDFYSWVRENAKALLA--------RDGGALEYA--VYRSLQLKAGVVEVDEFEERGVRQVLNVGHTVG--HAVERVLGLLHGEAVAVGMVAELRLSSELGYLRESHVAEAAEVLSSLGLPTSVKATEQQLAEAAALVKFDKKR 305          
BLAST of FC877945 vs. ExPASy Swiss-Prot
Match: AROB_TERTT (3-dehydroquinate synthase OS=Teredinibacter turnerae (strain ATCC 39867 / T7901) GN=aroB PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 3.230e-19
Identity = 69/242 (28.51%), Postives = 112/242 (46.28%), Query Frame = 1
Query:   37 GEKAKSLDTFTNIVDSMTDFGIIRKEPXXXXXXXXXTDVAGFACAAYRRNTNYIRIPTTVIGLIDARVSIKVAVNYGNYKNRLGAYHAPAHTLLDFGFLRTLPEAQVRNGFAELIKISSCAHLPTFDLLDEFCERLIKTKFGRVSDHDGEIKKAADEINRNGIFEMLKLETPNLHEIGLDRVIAYGHTWSPLHELAPPV-PLRHGHAISIDMAYSATLANDRGLLSDEEHRRLLALFSRAGL 759
            GE+ K+L     I D++      RK            D+ GFA A Y+R  N+I++PTT++  +D+ V  K  VN+   KN +GA++ P   ++D   L TLPE ++  G AE+IK    A +P F+ L+        T    +   + E    A E++        ++   +  E G+  ++  GHT+    E         HG A+   M  +  L++  G L  +E  R +AL + AGL
Sbjct:   71 GEQHKTLGVLNTIFDTLIAQRHNRKTTLIALGGGVVGDMTGFAAACYQRGVNFIQVPTTLLSQVDSSVGGKTGVNHPQGKNMIGAFYQPQAVVIDTQVLDTLPERELSAGLAEVIKYGIIADIPFFEWLE--------TNMPALLARESEALAYAIEVS---CAIKARVVAQDEKESGIRAILNLGHTFGHAIESHQGYGDWVHGEAVGAGMVLACELSSRLGWLDAKECDRAVALIAAAGL 301          
BLAST of FC877945 vs. ExPASy Swiss-Prot
Match: AROB_SYNPX (3-dehydroquinate synthase OS=Synechococcus sp. (strain WH8102) GN=aroB PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 3.230e-19
Identity = 73/242 (30.17%), Postives = 106/242 (43.80%), Query Frame = 1
Query:   37 GEKAKSLDTFTNIVDSMTDFGIIRKEPXXXXXXXXXTDVAGFACAAYRRNTNYIRIPTTVIGLIDARVSIKVAVNYGNYKNRLGAYHAPAHTLLDFGFLRTLPEAQVRNGFAELIKISSCAHLPTFDLLDEFCERLIKTKFGRVSDHDGEIKKAADEINRNGIFEMLKLETPNLHEIGLDRVIAYGHTWSPLHE-LAPPVPLRHGHAISIDMAYSATLANDRGLLSDEEHRRLLALFSRAGL 759
            GE+ K+  T   I DS  +  + R             D+ GFA A + R    I++PTT++ ++DA +  K  VN+   KN +GA+H P+  L+D   L TLPE + R G AE+IK         F  L+E  E       G             + I         ++   +  E GL  V+ YGHT+  + E L       HG A++I M     LA +RG  + +E  R   L  R GL
Sbjct:   81 GEERKTPATVAAIHDSAFEQRLERSSLMLALGGGVVGDMTGFAAATWLRGIQVIQVPTTLLAMVDAAIGGKTGVNHPGGKNLIGAFHQPSLVLIDPETLNTLPEREFRAGMAEVIKYGILGDPALFQCLEEGPEPNSAAGLG---------NSRLETILERSAAAKARVVAADEREGGLRAVLNYGHTFGHVVETLCGYGTWLHGEAVAIGMVAVGQLAVNRGSWTADEAGRQTQLIQRCGL 313          
BLAST of FC877945 vs. ExPASy Swiss-Prot
Match: AROB_SULAC (3-dehydroquinate synthase OS=Sulfolobus acidocaldarius GN=aroB PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 3.230e-19
Identity = 64/223 (28.70%), Postives = 103/223 (46.19%), Query Frame = 1
Query:   37 GEKAKSLDTFTNIVDSMTDFGIIRKEPXXXXXXXXXTDVAGFACAAYRRNTNYIRIPTTVIGLIDARVSIKVAVNYGNYKNRLGAYHAPAHTLLDFGFLRTLPEAQVRNGFAELIKISSCAHLPTFDLLDEFCERLIKTKFGRVSDHDGEIKKAADEINRNGIFEMLKLETPNLHEI-GLDRVIAYGHTWSPLHELAPPVPLRHGHAISIDMAYSATLANDRG 702
            GE+AK +     ++  + D G  R +          TD  GF  + Y R  N I +PTT++G++DA +  K  VN+G  KN +G ++ P   + D  FL +LP  +VR G AE+IK           +LD+     +      V   D E   + + + +  I + L +   +  E  G+  V+ +GHT     E      + HG+AIS+ M   A +A + G
Sbjct:   62 GEEAKDIQYSLELLKVLFDGGFDRGDYVIAIGGGSVTDTVGFIASTYMRGLNLINVPTTLLGMVDAGIGGKNGVNFGRIKNIIGTFYQPRAIIADLRFLISLPSEEVRKGLAEVIKYGL--------VLDKELYDFLALNKNSVLSKDPE---SLEYVVQRSIQDKLSVVKEDERETKGVRIVLNFGHTIGHAIEAGSGFSIPHGYAISVGMVCEAKIAEEMG 273          
BLAST of FC877945 vs. ExPASy Swiss-Prot
Match: AROB_CAMJJ (3-dehydroquinate synthase OS=Campylobacter jejuni subsp. jejuni serotype O:23/36 (strain 81-176) GN=aroB PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 4.218e-19
Identity = 73/275 (26.55%), Postives = 133/275 (48.36%), Query Frame = 1
Query:   10 ELKIHQTMIGEKAKSLDTFTNIVDSMTDFGIIRKEPXXXXXXXXXTDVAGFACAAYRRNTNYIRIPTTVIGLIDARVSIKVAVNYGNYKNRLGAYHAPAHTLLDFGFLRTLPEAQVRNGFAELIKISSCAHLPTFDLLDEFCERLIKTKFGRVSDHDGEIKKAADEINRNGIFEMLKLETPNLHEIGLDRVIAYGHTWSPLHELAPPVPL-RHGHAISIDMAYSATLANDRGLLSDEEHRRLLALFSRAGLSMDHEL-----FYEE-ILDKATQS 813
            E+ I     GE+ K+L T   I++ M +  + RK           +D+ GFA + Y+R  ++I IPTT++  +DA V  K  VN    KN +G ++ P     +  FL+TL   ++  G AE IK+++       D + +F E++ +  F   +  +    +   +I    I    ++   +  E GL  ++ YGHT++ + E      L  HG A++I M  +  LA + GLL   + +++  +  + GL + +++     FYE   +DK + +
Sbjct:   52 EIFIATVKDGEEYKNLSTMEEILNQMFNSKLDRKSVLISFGGGVISDMGGFAASIYQRGIDFINIPTTLLACVDAAVGGKTGVNNNFGKNLIGTFYQPKAVYCESSFLKTLSFRELAAGMAEFIKMAAMFD----DSILDFIEKIDEKSFLNATCEN----EIFTQIIARSIELKSRVVEQDEKESGLRMLLNYGHTFAHVIENFTDYKLYLHGEAVAIGMVMANQLALNLGLLDKMQSQKIKDILLKFGLPISYKINNVDEFYEAFFMDKKSSN 318          
BLAST of FC877945 vs. ExPASy Swiss-Prot
Match: AROB_SACEN (3-dehydroquinate synthase OS=Saccharopolyspora erythraea (strain NRRL 23338) GN=aroB PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 5.509e-19
Identity = 63/202 (31.19%), Postives = 96/202 (47.52%), Query Frame = 1
Query:  145 TDVAGFACAAYRRNTNYIRIPTTVIGLIDARVSIKVAVNYGNYKNRLGAYHAPAHTLLDFGFLRTLPEAQVRNGFAELIKISSCAHLPTFDLLDEFCERLIKTKFGRVSDHDGEIKKAADEINRNGIFEMLKLETPNLHEIGLDRVIAYGHTWSPLHELAPPVPLRHGHAISIDMAYSATLANDRGLLSDE---EHRRLLAL 741
            TDVAGF    + R    + +PTT++G++DA +  K  +N    KN +G +H P+  L+D   L  LP  ++  G AE++K    A        D    RL++       D  GE+     E+ R  I     +   +L E  L  V+ YGHT +   E       RHG A+S+ + ++A LA   G L DE    H+++L L
Sbjct:  107 TDVAGFVAGTWMRGVRVVHVPTTLLGMVDAAIGGKAGINTDAGKNLVGVFHEPSAVLVDLATLEGLPRNELVAGMAEVVKAGFIA--------DPEILRLVEADPQGALDPAGEV---IAELVRRAIQVKADVVASDLRESHLREVLNYGHTLAHAIERRERYRWRHGAAVSVGLVFAAELARLAGRLDDETADRHKKVLDL 297          
BLAST of FC877945 vs. ExPASy Swiss-Prot
Match: AROB_PASMU (3-dehydroquinate synthase OS=Pasteurella multocida GN=aroB PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 5.509e-19
Identity = 73/248 (29.44%), Postives = 118/248 (47.58%), Query Frame = 1
Query:   37 GEKAKSLDTFTNIVDSMTDFGIIRKEPXXXXXXXXXTDVAGFACAAYRRNTNYIRIPTTVIGLIDARVSIKVAVNYGNYKNRLGAYHAPAHTLLDFGFLRTLPEAQVRNGFAELIKISSCAHLPTFDLLDEFCERLI-------KTKFGRVSDHDGEIKKAADEINRNGIFEMLKLETPNLHEIGLDRVIAYGHTWSPLHELAPPVPLRHGHAISIDMAYSATLANDRGLLSDEEHRRLLALFSRAGL 759
            GE+ K+LD+   I  ++      R             DVAG+A A+Y+R   +I+IPTT++  +D+ V  K AVN+   KN +GA++ P   ++D   L +LP+ ++  G AE+IK  +   LP F  L++  + L+       +T   R      ++  A DE  + G   +L L     H I  +  + YGH W             HG A+++ M  +A L+   G L+  +  RL  L +RA L
Sbjct:   71 GEQYKTLDSLNLIFTALLQGNHGRDTTIIALGGGVIGDVAGYAAASYQRGVRFIQIPTTLLAQVDSSVGGKTAVNHALGKNMIGAFYQPCTVIIDTLTLNSLPKREINAGLAEVIKYGAILDLPFFTWLEQNIDSLVARDPDNLQTCIARCCQIKADV-VARDETEK-GDRALLNLGHTFGHAI--ETHLGYGH-W------------LHGEAVAVGMLMAAVLSEKLGNLTKTDVARLERLLARANL 301          
BLAST of FC877945 vs. ExPASy Swiss-Prot
Match: AROB_GEOBB (3-dehydroquinate synthase OS=Geobacter bemidjiensis (strain Bem / ATCC BAA-1014 / DSM 16622) GN=aroB PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 5.509e-19
Identity = 67/242 (27.69%), Postives = 108/242 (44.63%), Query Frame = 1
Query:   37 GEKAKSLDTFTNIVDSMTDFGIIRKEPXXXXXXXXXTDVAGFACAAYRRNTNYIRIPTTVIGLIDARVSIKVAVNYGNYKNRLGAYHAPAHTLLDFGFLRTLPEAQVRNGFAELIKISSCAHLPTFDLLDEFCERLIKTKFGRVSDHDGEIKKAADEINRNGIFEMLKLETPNLHEIGLDRVIAYGHTWS-PLHELAPPVPLRHGHAISIDMAYSATLANDRGLLSDEEHRRLLALFSRAGL 759
            GE  K+  T   I D + D  + R             D+AGFA A+Y R   +++IPTT++  +D+ V  K  +N+   KN +GA++ P   L+D   L TLP+ +  +G  E++K  +      FD L++  + L+              K+A  +          K+   +  E G+  V+ YGHT    +  L       HG A++I M  +A L+   G  S  +  R+ AL    GL
Sbjct:   75 GEGYKNSATLNLIYDGLVDASLDRGSFILALGGGVIGDMAGFAAASYLRGIPFVQIPTTLLSQVDSSVGGKTGINHPRGKNLIGAFYQPKAVLIDVATLDTLPKREFLSGLGEIVKYGAVLDGGFFDFLEKNAKLLL-----------ARDKEALIQAVSRSCAIKAKVVAEDEREGGVRAVLNYGHTLGHAVETLTGYTRYLHGEAVAIGMVQAARLSQHYGFCSQADRERIEALVVALGL 305          
BLAST of FC877945 vs. ExPASy Swiss-Prot
Match: AROB_CAMJ8 (3-dehydroquinate synthase OS=Campylobacter jejuni subsp. jejuni serotype O:6 (strain 81116 / NCTC 11828) GN=aroB PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 5.509e-19
Identity = 72/275 (26.18%), Postives = 132/275 (48.00%), Query Frame = 1
Query:   10 ELKIHQTMIGEKAKSLDTFTNIVDSMTDFGIIRKEPXXXXXXXXXTDVAGFACAAYRRNTNYIRIPTTVIGLIDARVSIKVAVNYGNYKNRLGAYHAPAHTLLDFGFLRTLPEAQVRNGFAELIKISSCAHLPTFDLLDEFCERLIKTKFGRVSDHDGEIKKAADEINRNGIFEMLKLETPNLHEIGLDRVIAYGHTWSPLHELAPPVPL-RHGHAISIDMAYSATLANDRGLLSDEEHRRLLALFSRAGLSMDHEL-----FYEE-ILDKATQS 813
            E+ I     GE+ K+L T   I++ M +  + RK           +D+ GFA + Y+R  ++I IPTT++  +DA V  K  VN    KN +G ++ P     +  FL+TL   ++  G AE IK+++       D + +F E++ +  F   +  +    +   +I    I    ++   +  E GL  ++ YGHT++ + E      L  HG A++I M  +  LA + G L   + +++  +  + GL + +++     FYE   +DK + +
Sbjct:   52 EIFIAAVKDGEEYKNLSTMEEILNQMFNSKLDRKSVLISFGGGVISDMGGFAASIYQRGIDFINIPTTLLACVDAAVGGKTGVNNNFGKNLIGTFYQPKAVYCESSFLKTLSSRELAAGMAEFIKMAAMFD----DSILDFIEKIDEKSFLNATCEN----EIFTQIIARSIELKSRVVEQDEKESGLRMLLNYGHTFAHVIENFTDYKLYLHGEAVAIGMVMANQLALNLGFLDKMQSQKIKDILLKFGLPISYKINNVDEFYEAFFMDKKSSN 318          
BLAST of FC877945 vs. ExPASy Swiss-Prot
Match: AROB_SYNP2 (3-dehydroquinate synthase OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=aroB PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 7.195e-19
Identity = 76/279 (27.24%), Postives = 119/279 (42.65%), Query Frame = 1
Query:   22 HQTMIGEKAKSLDTFTNIVDSMTDFGIIRKEPXXXXXXXXXTDVAGFACAAYRRNTNYIRIPTTVIGLIDARVSIKVAVNYGNYKNRLGAYHAPAHTLLDFGFLRTLPEAQVRNGFAELI------------KISSCAHLPTF-----DLLDEFCERLIKTKFGRVSDHDGEIKKAADEINRNGIFEMLKLETPNLHEIGLDRVIAYGHTWS-PLHELAPPVPLRHGHAISIDMAYSATLANDRGLLSDEEHRRLLALFSRAGLSMD--HELFYEEILD 798
            H    GE+ K+L +   I D+     + R             D+ GFA A + R  N++++PTT++ ++DA V  K  VN+   KN +GA++ P   L+D   L+TLP  + R G AE+I            K+ +   + ++     DLLD   ER  + K   VS  +                           E GL  ++ YGHT    +  L       HG  ++I MA +  +A    L +  E +R  AL  +AGL  +  + L  E IL+
Sbjct:   69 HLIPAGEQYKNLASIEKIYDTAFKNRLERSSTLLALGGGVIGDMTGFAAATWLRGINFVQVPTTLLAMVDASVGGKTGVNHPQGKNLIGAFYQPKFVLIDPTVLKTLPVREFRAGMAEVIKYGVIWDADLFTKLEAAEQIDSYATIDPDLLDLILERSCRAKAEVVSQDE--------------------------RESGLRAILNYGHTLGHAVESLTHYETFVHGEGVAIGMALAGAIATRMNLWTTAETQRQDALIKKAGLPTECPNNLAIEAILE 321          
The following BLAST results are available for this feature:
BLAST of FC877945 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
AROB_THENV3.230e-1926.043-dehydroquinate synthase OS=Thermoproteus neutrop... [more]
AROB_TERTT3.230e-1928.513-dehydroquinate synthase OS=Teredinibacter turner... [more]
AROB_SYNPX3.230e-1930.173-dehydroquinate synthase OS=Synechococcus sp. (st... [more]
AROB_SULAC3.230e-1928.703-dehydroquinate synthase OS=Sulfolobus acidocalda... [more]
AROB_CAMJJ4.218e-1926.553-dehydroquinate synthase OS=Campylobacter jejuni ... [more]
AROB_SACEN5.509e-1931.193-dehydroquinate synthase OS=Saccharopolyspora ery... [more]
AROB_PASMU5.509e-1929.443-dehydroquinate synthase OS=Pasteurella multocida... [more]
AROB_GEOBB5.509e-1927.693-dehydroquinate synthase OS=Geobacter bemidjiensi... [more]
AROB_CAMJ85.509e-1926.183-dehydroquinate synthase OS=Campylobacter jejuni ... [more]
AROB_SYNP27.195e-1927.243-dehydroquinate synthase OS=Synechococcus sp. (st... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA78AH03RM1 IVIA1 Citrus clementina cDNA clone IC0AAA78AH03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877945 ID=FC877945; Name=FC877945; organism=Citrus clementina; type=EST; length=881bp
CACCGTCTTGAATTGAAGATTCACCAGACAATGATCGGAGAGAAGGCCAA
GTCCTTGGATACGTTTACCAACATTGTGGACTCCATGACTGATTTTGGAA
TCATTCGGAAAGAGCCTGTTTTGGTTGTGGGCGGAGGACTAGTCACCGAC
GTTGCAGGATTTGCCTGCGCCGCCTATCGCCGCAACACCAATTACATCCG
TATCCCCACAACCGTTATTGGCCTGATCGACGCCCGTGTCAGTATCAAAG
TCGCTGTCAACTACGGCAACTACAAGAACCGACTCGGTGCCTACCATGCA
CCCGCGCACACCCTTCTTGATTTTGGTTTCTTGAGAACCTTGCCCGAGGC
TCAAGTTCGCAACGGGTTTGCCGAGCTCATCAAGATTTCGAGCTGTGCTC
ACTTGCCGACATTTGACTTGTTGGATGAGTTCTGTGAGCGGCTCATCAAG
ACCAAATTCGGGCGTGTCTCCGACCACGATGGAGAGATCAAGAAAGCTGC
CGACGAGATCAACCGGAACGGGATCTTTGAGATGTTGAAGCTCGAAACGC
CGAATCTGCATGAGATCGGCCTGGACCGAGTGATTGCGTATGGCCACACT
TGGTCGCCCCTTCACGAGCTCGCGCCCCCAGTTCCACTTCGCCACGGCCA
TGCCATTTCAATAGATATGGCTTATTCTGCCACTTTGGCGAATGACCGTG
GCCTTCTCAGTGATGAAGAGCACCGGAGATTGTTGGCTCTCTTTTCTCGT
GCAGGCCTCTCCATGGATCACGAACTTTTCTACGAAGAAATTCTGGATAA
AGCCACACAGTCATTTTGAGACCCGAGACGGGCTCTTGCGTGCAGCTGTG
CCAAGTCCACTAGGCAGCTGCAAGTTCTTGA
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