FC877953
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC877953 vs. ExPASy Swiss-Prot
Match: SFRS1_BOVIN (Splicing factor, arginine/serine-rich 1 OS=Bos taurus GN=SFRS1 PE=2 SV=1) HSP 1 Score: 164.851 bits (416), Expect = 5.374e-40 Identity = 93/188 (49.47%), Postives = 112/188 (59.57%), Query Frame = 2 Query: 152 IYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRN 715 IYVGNLP DIR ++ED+FYKYG I DI+LK P + FVEFE+ RDAEDA+ GRDGY++DG RLRVE SR SE RV+V GLP S SWQDLKDHMR+AGDVC+A+V RD GT GVV++ EDM YA+RKLD+T+FR+ Sbjct: 18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRSGRGTGRGGGGGGGGGAPRGRYGPP--------------------SRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD--GT-GVVEFVRKEDMTYAVRKLDNTKFRS 182
BLAST of FC877953 vs. ExPASy Swiss-Prot
Match: SFRS9_MOUSE (Splicing factor, arginine/serine-rich 9 OS=Mus musculus GN=Sfrs9 PE=1 SV=1) HSP 1 Score: 164.466 bits (415), Expect = 7.018e-40 Identity = 91/197 (46.19%), Postives = 114/197 (57.87%), Query Frame = 2 Query: 125 EMSGRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRN 715 E G IYVGNLPSD+RE ++EDLFYKYGRI +IELK + FV FE+ RDAEDAI GR+GY++ CRLRVE +R S++RV+V GLP S SWQDLKDHMR+AGDVC+A+V +D G+V+Y EDM+YA+RKLDDT+FR+ Sbjct: 8 ERGGEGDGRIYVGNLPSDVREKDLEDLFYKYGRIREIELKNRHGLVPFAFVRFEDPRDAEDAIYGRNGYDYGQCRLRVEFPRTYGGRGGWPRGARNGPP----------------------------TRRSDFRVLVSGLPPSGSWQDLKDHMREAGDVCYADVQKDG---MGMVEYLRKEDMEYALRKLDDTKFRS 173
BLAST of FC877953 vs. ExPASy Swiss-Prot
Match: SFRS9_RAT (Splicing factor, arginine/serine-rich 9 OS=Rattus norvegicus GN=Sfrs9 PE=1 SV=1) HSP 1 Score: 163.31 bits (412), Expect = 1.564e-39 Identity = 90/197 (45.69%), Postives = 114/197 (57.87%), Query Frame = 2 Query: 125 EMSGRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRN 715 E G IYVGNLP+D+RE ++EDLFYKYGRI +IELK + FV FE+ RDAEDAI GR+GY++ CRLRVE +R S++RV+V GLP S SWQDLKDHMR+AGDVC+A+V +D G+V+Y EDM+YA+RKLDDT+FR+ Sbjct: 7 ERGGEGDGRIYVGNLPTDVREKDLEDLFYKYGRIREIELKNRHGLVPFAFVRFEDPRDAEDAIYGRNGYDYGQCRLRVEFPRAYGGRGGWPRASRNGPP----------------------------TRRSDFRVLVSGLPPSGSWQDLKDHMREAGDVCYADVQKDG---MGMVEYLRKEDMEYALRKLDDTKFRS 172
BLAST of FC877953 vs. ExPASy Swiss-Prot
Match: SFRS9_HUMAN (Splicing factor, arginine/serine-rich 9 OS=Homo sapiens GN=SFRS9 PE=1 SV=1) HSP 1 Score: 163.31 bits (412), Expect = 1.564e-39 Identity = 90/197 (45.69%), Postives = 114/197 (57.87%), Query Frame = 2 Query: 125 EMSGRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRN 715 E G IYVGNLP+D+RE ++EDLFYKYGRI +IELK + FV FE+ RDAEDAI GR+GY++ CRLRVE +R S++RV+V GLP S SWQDLKDHMR+AGDVC+A+V +D G+V+Y EDM+YA+RKLDDT+FR+ Sbjct: 7 ERGGEGDGRIYVGNLPTDVREKDLEDLFYKYGRIREIELKNRHGLVPFAFVRFEDPRDAEDAIYGRNGYDYGQCRLRVEFPRTYGGRGGWPRGGRNGPP----------------------------TRRSDFRVLVSGLPPSGSWQDLKDHMREAGDVCYADVQKDG---VGMVEYLRKEDMEYALRKLDDTKFRS 172
BLAST of FC877953 vs. ExPASy Swiss-Prot
Match: SRR55_DROME (Serine-arginine protein 55 OS=Drosophila melanogaster GN=B52 PE=1 SV=4) HSP 1 Score: 94.7449 bits (234), Expect = 6.830e-19 Identity = 66/185 (35.68%), Postives = 87/185 (47.03%), Query Frame = 2 Query: 152 IYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTE 706 +YVG LP +RE ++E F YGR DI +K Y FVEFE+ RDA+DA+ +G G R+ VE A +EYR+IV L S SWQDLKD+MR+AG+V +A+ + GVV++ + DMK AI KLDDTE Sbjct: 6 VYVGGLPYGVRERDLERFFKGYGRTRDILIKNG-----YGFVEFEDYRDADDAVYELNGKELLGERVVVEPARGTARGSNRDRYDDRYGGRRGGGGGRYNEKNKNSRSSSRYGPPL----RTEYRLIVENLSSRVSWQDLKDYMRQAGEVTYADAHKQRRNE-GVVEFASLSDMKTAIEKLDDTE 180
BLAST of FC877953 vs. ExPASy Swiss-Prot
Match: RSP6_CAEEL (Probable splicing factor, arginine/serine-rich 6 OS=Caenorhabditis elegans GN=rsp-6 PE=1 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 1.379e-11 Identity = 34/72 (47.22%), Postives = 48/72 (66.67%), Query Frame = 2 Query: 152 IYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 367 +YVG LPSD E+E++F ++GRI + + RPP + FVE+++ RDAEDA+R DG G R RVEL+ Sbjct: 5 VYVGGLPSDATSQELEEIFDRFGRIRKVW--VARRPPGFAFVEYDDVRDAEDAVRALDGSRICGVRARVELS 74 The following BLAST results are available for this feature:
BLAST of FC877953 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 16
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Sequences
The
following sequences are available for this feature:
EST sequence >FC877953 ID=FC877953; Name=FC877953; organism=Citrus clementina; type=EST; length=854bpback to top |