FC877953

Overview
NameFC877953
Unique NameFC877953
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length854
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC877953 vs. ExPASy Swiss-Prot
Match: SFRS1_BOVIN (Splicing factor, arginine/serine-rich 1 OS=Bos taurus GN=SFRS1 PE=2 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 5.374e-40
Identity = 93/188 (49.47%), Postives = 112/188 (59.57%), Query Frame = 2
Query:  152 IYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRN 715
            IYVGNLP DIR  ++ED+FYKYG I DI+LK     P + FVEFE+ RDAEDA+ GRDGY++DG RLRVE                                                SR SE RV+V GLP S SWQDLKDHMR+AGDVC+A+V RD  GT GVV++   EDM YA+RKLD+T+FR+
Sbjct:   18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRSGRGTGRGGGGGGGGGAPRGRYGPP--------------------SRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD--GT-GVVEFVRKEDMTYAVRKLDNTKFRS 182          
BLAST of FC877953 vs. ExPASy Swiss-Prot
Match: SFRS9_MOUSE (Splicing factor, arginine/serine-rich 9 OS=Mus musculus GN=Sfrs9 PE=1 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 7.018e-40
Identity = 91/197 (46.19%), Postives = 114/197 (57.87%), Query Frame = 2
Query:  125 EMSGRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRN 715
            E  G     IYVGNLPSD+RE ++EDLFYKYGRI +IELK       + FV FE+ RDAEDAI GR+GY++  CRLRVE                                                +R S++RV+V GLP S SWQDLKDHMR+AGDVC+A+V +D     G+V+Y   EDM+YA+RKLDDT+FR+
Sbjct:    8 ERGGEGDGRIYVGNLPSDVREKDLEDLFYKYGRIREIELKNRHGLVPFAFVRFEDPRDAEDAIYGRNGYDYGQCRLRVEFPRTYGGRGGWPRGARNGPP----------------------------TRRSDFRVLVSGLPPSGSWQDLKDHMREAGDVCYADVQKDG---MGMVEYLRKEDMEYALRKLDDTKFRS 173          
BLAST of FC877953 vs. ExPASy Swiss-Prot
Match: SFRS9_RAT (Splicing factor, arginine/serine-rich 9 OS=Rattus norvegicus GN=Sfrs9 PE=1 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 1.564e-39
Identity = 90/197 (45.69%), Postives = 114/197 (57.87%), Query Frame = 2
Query:  125 EMSGRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRN 715
            E  G     IYVGNLP+D+RE ++EDLFYKYGRI +IELK       + FV FE+ RDAEDAI GR+GY++  CRLRVE                                                +R S++RV+V GLP S SWQDLKDHMR+AGDVC+A+V +D     G+V+Y   EDM+YA+RKLDDT+FR+
Sbjct:    7 ERGGEGDGRIYVGNLPTDVREKDLEDLFYKYGRIREIELKNRHGLVPFAFVRFEDPRDAEDAIYGRNGYDYGQCRLRVEFPRAYGGRGGWPRASRNGPP----------------------------TRRSDFRVLVSGLPPSGSWQDLKDHMREAGDVCYADVQKDG---MGMVEYLRKEDMEYALRKLDDTKFRS 172          
BLAST of FC877953 vs. ExPASy Swiss-Prot
Match: SFRS9_HUMAN (Splicing factor, arginine/serine-rich 9 OS=Homo sapiens GN=SFRS9 PE=1 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 1.564e-39
Identity = 90/197 (45.69%), Postives = 114/197 (57.87%), Query Frame = 2
Query:  125 EMSGRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRN 715
            E  G     IYVGNLP+D+RE ++EDLFYKYGRI +IELK       + FV FE+ RDAEDAI GR+GY++  CRLRVE                                                +R S++RV+V GLP S SWQDLKDHMR+AGDVC+A+V +D     G+V+Y   EDM+YA+RKLDDT+FR+
Sbjct:    7 ERGGEGDGRIYVGNLPTDVREKDLEDLFYKYGRIREIELKNRHGLVPFAFVRFEDPRDAEDAIYGRNGYDYGQCRLRVEFPRTYGGRGGWPRGGRNGPP----------------------------TRRSDFRVLVSGLPPSGSWQDLKDHMREAGDVCYADVQKDG---VGMVEYLRKEDMEYALRKLDDTKFRS 172          
BLAST of FC877953 vs. ExPASy Swiss-Prot
Match: SRR55_DROME (Serine-arginine protein 55 OS=Drosophila melanogaster GN=B52 PE=1 SV=4)

HSP 1 Score: 94.7449 bits (234), Expect = 6.830e-19
Identity = 66/185 (35.68%), Postives = 87/185 (47.03%), Query Frame = 2
Query:  152 IYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTE 706
            +YVG LP  +RE ++E  F  YGR  DI +K       Y FVEFE+ RDA+DA+   +G    G R+ VE A                                                 +EYR+IV  L S  SWQDLKD+MR+AG+V +A+  +      GVV++ +  DMK AI KLDDTE
Sbjct:    6 VYVGGLPYGVRERDLERFFKGYGRTRDILIKNG-----YGFVEFEDYRDADDAVYELNGKELLGERVVVEPARGTARGSNRDRYDDRYGGRRGGGGGRYNEKNKNSRSSSRYGPPL----RTEYRLIVENLSSRVSWQDLKDYMRQAGEVTYADAHKQRRNE-GVVEFASLSDMKTAIEKLDDTE 180          
BLAST of FC877953 vs. ExPASy Swiss-Prot
Match: RSP6_CAEEL (Probable splicing factor, arginine/serine-rich 6 OS=Caenorhabditis elegans GN=rsp-6 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.379e-11
Identity = 34/72 (47.22%), Postives = 48/72 (66.67%), Query Frame = 2
Query:  152 IYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 367
            +YVG LPSD    E+E++F ++GRI  +   +  RPP + FVE+++ RDAEDA+R  DG    G R RVEL+
Sbjct:    5 VYVGGLPSDATSQELEEIFDRFGRIRKVW--VARRPPGFAFVEYDDVRDAEDAVRALDGSRICGVRARVELS 74          
The following BLAST results are available for this feature:
BLAST of FC877953 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
SFRS1_BOVIN5.374e-4049.47Splicing factor, arginine/serine-rich 1 OS=Bos tau... [more]
SFRS9_MOUSE7.018e-4046.19Splicing factor, arginine/serine-rich 9 OS=Mus mus... [more]
SFRS9_RAT1.564e-3945.69Splicing factor, arginine/serine-rich 9 OS=Rattus ... [more]
SFRS9_HUMAN1.564e-3945.69Splicing factor, arginine/serine-rich 9 OS=Homo sa... [more]
SRR55_DROME6.830e-1935.68Serine-arginine protein 55 OS=Drosophila melanogas... [more]
RSP6_CAEEL1.379e-1147.22Probable splicing factor, arginine/serine-rich 6 O... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA22DG10RM1 IVIA1 Citrus clementina cDNA clone IC0AAA22DG10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877953 ID=FC877953; Name=FC877953; organism=Citrus clementina; type=EST; length=854bp
CTCTGGAGCTCTCCATCGGAAGCAGCGGTCGTTTTCGGTAAGGACCGGCG
GGTCGTCACGTGGTGGTTCAGCGACGCTTCTCCTGCTCATAAATCTTCGT
GAAATTTTATAGTCCTTACCATCAGAAATGAGTGGTCGTTTTTCTCGTAC
AATCTATGTTGGCAACCTGCCCTCTGATATAAGAGAATATGAAGTTGAGG
ATCTCTTTTACAAGTATGGCCGTATATTGGATATTGAATTAAAGATCCCC
CCTCGCCCACCATGTTATTGTTTTGTTGAGTTTGAGAATGCTCGTGATGC
CGAAGATGCTATTAGAGGTCGTGATGGCTATAACTTTGATGGTTGTCGTT
TAAGGGTTGAGCTCGCCCATGGTGGTAGTGGTAGAGGTCCATCATCAAGT
GATCGTCGTGGTGGCTATGGTGGTGGTGGTGCTGCTGCTGGTGGTGCTGG
TGCTGGTGCTGGTGCTGGTGCTGGTGCTGGTGCTGGTGCTGGTCGTTTTG
GCATCTCACGCCATTCTGAATATCGAGTTATTGTGCGCGGACTTCCTTCT
TCAGCTTCCTGGCAGGATTTAAAGGATCATATGCGAAAAGCAGGCGATGT
TTGTTTTGCTGAAGTTTCCCGTGACAGTGAGGGGACTTATGGGGTCGTTG
ATTATACTAATCCTGAAGACATGAAATATGCAATTCGGAAACTTGATGAC
ACTGAATTTAGAAATCCTTGGGCAAGAGGGCGCATAACGGTGAAAAGATA
CGATCGTAGTCCATCGAGAAGCCGCAGTAGAAGCCGAAGTAGAAGCCGAA
GCAGAAGCAGAATTGTGCGAAGAAATAGAAGTAAATCATTAGAGCGTTCT
GTTT
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