FC877968

Overview
NameFC877968
Unique NameFC877968
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length805
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC877968 vs. ExPASy Swiss-Prot
Match: TTC28_HUMAN (Tetratricopeptide repeat protein 28 OS=Homo sapiens GN=TTC28 PE=1 SV=4)

HSP 1 Score: 77.7962 bits (190), Expect = 7.901e-14
Identity = 39/94 (41.49%), Postives = 57/94 (60.64%), Query Frame = 1
Query:  127 DFAGAAEKFSEAIALDPSNHVLYSNRSGAYASLKNFDKALEDANKTTELKADWAKGWGRKGAALHGVGDLVEAVDAFEHALSLEPTNAQAKAGL 408
            DF  A   ++EA+A+DP N +LYSNRS AY  ++ +DKAL+DA K   L   W K + R+G AL  +G   +A+ AF   L+ +P + Q   G+
Sbjct:   73 DFHTAIVLYNEALAVDPQNCILYSNRSAAYMKIQQYDKALDDAIKARLLNPKWPKAYFRQGVALQYLGRHADALAAFASGLAQDPKSLQLLVGM 166          
BLAST of FC877968 vs. ExPASy Swiss-Prot
Match: SGTA_RAT (Small glutamine-rich tetratricopeptide repeat-containing protein alpha OS=Rattus norvegicus GN=Sgta PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.921e-13
Identity = 38/110 (34.55%), Postives = 63/110 (57.27%), Query Frame = 1
Query:   82 ADALKAEGNKLFAAKDFAGAAEKFSEAIALDPSNHVLYSNRSGAYASLKNFDKALEDANKTTELKADWAKGWGRKGAALHGVGDLVEAVDAFEHALSLEPTNAQAKAGLE 411
            A+ LK EGN+    ++F  A   + +AI L+P+N V + NR+ AY+ L N+  A++D  +   +   ++K +GR G AL  +    EAV  ++ AL L+P N   K+ L+
Sbjct:   91 AERLKTEGNEQMKLENFEAAVHLYGKAIELNPANAVYFCNRAAAYSKLGNYVGAVQDCERAIGIDPGYSKAYGRMGLALSSLNKHAEAVAYYKKALELDPDNDTYKSNLK 200          
BLAST of FC877968 vs. ExPASy Swiss-Prot
Match: SGTA_MOUSE (Small glutamine-rich tetratricopeptide repeat-containing protein alpha OS=Mus musculus GN=Sgta PE=1 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 3.921e-13
Identity = 38/110 (34.55%), Postives = 63/110 (57.27%), Query Frame = 1
Query:   82 ADALKAEGNKLFAAKDFAGAAEKFSEAIALDPSNHVLYSNRSGAYASLKNFDKALEDANKTTELKADWAKGWGRKGAALHGVGDLVEAVDAFEHALSLEPTNAQAKAGLE 411
            A+ LK EGN+    ++F  A   + +AI L+P+N V + NR+ AY+ L N+  A++D  +   +   ++K +GR G AL  +    EAV  ++ AL L+P N   K+ L+
Sbjct:   92 AERLKTEGNEQMKLENFEAAVHLYGKAIELNPANAVYFCNRAAAYSKLGNYVGAVQDCERAIGIDPGYSKAYGRMGLALSSLNKHAEAVAYYKKALELDPDNDTYKSNLK 201          
BLAST of FC877968 vs. ExPASy Swiss-Prot
Match: PPP5_HUMAN (Serine/threonine-protein phosphatase 5 OS=Homo sapiens GN=PPP5C PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.490e-12
Identity = 52/193 (26.94%), Postives = 89/193 (46.11%), Query Frame = 1
Query:   82 ADALKAEGNKLFAAKDFAGAAEKFSEAIALDPSNHVLYSNRSGAYASLKNFDKALEDANKTTELKADWAKGWGRKGAALHGVGDLVEAVDAFEHALSLEPTNAQAKAGLESVRRAIDAEA--KAXXXXXXXXXXXXNMFNDPKMIEKLASNPKTAGLLGDSAFMAKIQQLKNNPNAMGEMMGDPRMLQVMGVL 654
            A+ LK + N  F AKD+  A + +S+AI L+PSN + Y NRS AY   + +  AL DA +  EL   + KG+ R+ A+   +G    A+  +E  + ++P +  AK   +   + +  +A  +A            ++  +   IE   S PK        +FM ++ Q   +   +        ++QV  VL
Sbjct:   28 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDEYSGPKLEDGKVTISFMKELMQWYKDQKKLHRKCAYQILVQVKEVL 220          
BLAST of FC877968 vs. ExPASy Swiss-Prot
Match: PPP5_RAT (Serine/threonine-protein phosphatase 5 OS=Rattus norvegicus GN=Ppp5c PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.542e-12
Identity = 39/120 (32.50%), Postives = 65/120 (54.17%), Query Frame = 1
Query:   82 ADALKAEGNKLFAAKDFAGAAEKFSEAIALDPSNHVLYSNRSGAYASLKNFDKALEDANKTTELKADWAKGWGRKGAALHGVGDLVEAVDAFEHALSLEPTNAQAKAGLESVRRAIDAEA 441
            A+ LK + N  F AKD+  A + +S+AI L+PSN + Y NRS AY   + +  AL DA +  EL   + KG+ R+ A+   +G    A+  +E  + ++P +  AK   +   + +  +A
Sbjct:   28 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPNDKDAKMKYQECSKIVKQKA 147          
BLAST of FC877968 vs. ExPASy Swiss-Prot
Match: LONF3_MOUSE (LON peptidase N-terminal domain and RING finger protein 3 OS=Mus musculus GN=Lonrf3 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 5.663e-12
Identity = 40/107 (37.38%), Postives = 62/107 (57.94%), Query Frame = 1
Query:   82 ADALKAEGNKLFAAKDFAGAAEKFSEAIALDPSNHVLYSNRSGAYASLKNFDKALEDANKTTELKADWAKGWGRKGAALHGVGDLVEAVDAFEHALSLEPTNAQAKA 402
            A  L+ EGN+LF       A  K++EA+ L P++H+LYSNRS  Y +L++ + AL DA    +L+    K   RK  AL  +G + EA+  F + +SL+  N  A++
Sbjct:  244 ASQLRHEGNRLFREHQVEAALLKYNEAVRLAPNDHLLYSNRSQIYFTLESHEDALHDAEIACKLRPMGFKAHFRKAQALATLGKVKEALKEFLYCVSLDGKNKSARS 350          
BLAST of FC877968 vs. ExPASy Swiss-Prot
Match: LONF3_HUMAN (LON peptidase N-terminal domain and RING finger protein 3 OS=Homo sapiens GN=LONRF3 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 5.663e-12
Identity = 39/106 (36.79%), Postives = 63/106 (59.43%), Query Frame = 1
Query:   82 ADALKAEGNKLFAAKDFAGAAEKFSEAIALDPSNHVLYSNRSGAYASLKNFDKALEDANKTTELKADWAKGWGRKGAALHGVGDLVEAVDAFEHALSLEPTNAQAK 399
            A  L+ EGN+L+  +    A  K++EA+ L P++H+LYSNRS  Y +L++ + AL DA    +L+    K   RK  AL  +G + EA+  F + +SL+  N +A+
Sbjct:  243 ASQLRHEGNRLYRERQVEAALLKYNEAVKLAPNDHLLYSNRSQIYFTLESHENALHDAEIACKLRPMGFKAHFRKAQALATLGKVEEALREFLYCVSLDGKNKRAR 348          
BLAST of FC877968 vs. ExPASy Swiss-Prot
Match: PPP5_MOUSE (Serine/threonine-protein phosphatase 5 OS=Mus musculus GN=Ppp5c PE=2 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 7.395e-12
Identity = 38/120 (31.67%), Postives = 64/120 (53.33%), Query Frame = 1
Query:   82 ADALKAEGNKLFAAKDFAGAAEKFSEAIALDPSNHVLYSNRSGAYASLKNFDKALEDANKTTELKADWAKGWGRKGAALHGVGDLVEAVDAFEHALSLEPTNAQAKAGLESVRRAIDAEA 441
            A+ LK + N  F AKD+  A + +S+AI L+P N + Y NRS AY   + +  AL DA +  EL   + KG+ R+ A+   +G    A+  +E  + ++P +  AK   +   + +  +A
Sbjct:   28 AEELKTQANDYFKAKDYENAIKFYSQAIELNPGNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPNDKDAKMKYQECSKIVKQKA 147          
BLAST of FC877968 vs. ExPASy Swiss-Prot
Match: RPAP3_HUMAN (RNA polymerase II-associated protein 3 OS=Homo sapiens GN=RPAP3 PE=1 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 9.659e-12
Identity = 40/113 (35.40%), Postives = 58/113 (51.33%), Query Frame = 1
Query:   91 LKAEGNKLFAAKDFAGAAEKFSEAIALDPSNHVLYSNRSGAYASLKNFDKALEDANKTTELKADWAKGWGRKGAALHGVGDLVEAVDAFEHALSLEPTNAQAKAGLESVRRAI 429
            LK +GNK F    +  A + +++ +  DP N VL +NR+ AY  LK F  A  D N    L   + K + R+GAA   +  L EA   +E  L LEP N +A   L  + +A+
Sbjct:  136 LKEKGNKYFKQGKYDEAIDCYTKGMDADPYNPVLPTNRASAYFRLKKFAVAESDCNLAVALNRSYTKAYSRRGAARFALQKLEEAKKDYERVLELEPNNFEATNELRKISQAL 248          
BLAST of FC877968 vs. ExPASy Swiss-Prot
Match: PPP5_ARATH (Serine/threonine-protein phosphatase 5 OS=Arabidopsis thaliana GN=PAPP5 PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 9.659e-12
Identity = 33/116 (28.45%), Postives = 68/116 (58.62%), Query Frame = 1
Query:   82 ADALKAEGNKLFAAKDFAGAAEKFSEAIALDPSNHVLYSNRSGAYASLKNFDKALEDANKTTELKADWAKGWGRKGAALHGVGDLVEAVDAFEHALSLEPTNAQAKAGLESVRRAI 429
            A+  K++ N+ F    ++ A + +++AI L+ +N V ++NR+ A+  L+ +  A++DA+K  E+ + ++KG+ R+GAA   +G   +A+  F+    L P +  A   L+   +A+
Sbjct:   13 AEEFKSQANEAFKGHKYSSAIDLYTKAIELNSNNAVYWANRAFAHTKLEEYGSAIQDASKAIEVDSRYSKGYYRRGAAYLAMGKFKDALKDFQQVKRLSPNDPDATRKLKECEKAV 128          
The following BLAST results are available for this feature:
BLAST of FC877968 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
TTC28_HUMAN7.901e-1441.49Tetratricopeptide repeat protein 28 OS=Homo sapien... [more]
SGTA_RAT3.921e-1334.55Small glutamine-rich tetratricopeptide repeat-cont... [more]
SGTA_MOUSE3.921e-1334.55Small glutamine-rich tetratricopeptide repeat-cont... [more]
PPP5_HUMAN1.490e-1226.94Serine/threonine-protein phosphatase 5 OS=Homo sap... [more]
PPP5_RAT2.542e-1232.50Serine/threonine-protein phosphatase 5 OS=Rattus n... [more]
LONF3_MOUSE5.663e-1237.38LON peptidase N-terminal domain and RING finger pr... [more]
LONF3_HUMAN5.663e-1236.79LON peptidase N-terminal domain and RING finger pr... [more]
PPP5_MOUSE7.395e-1231.67Serine/threonine-protein phosphatase 5 OS=Mus musc... [more]
RPAP3_HUMAN9.659e-1235.40RNA polymerase II-associated protein 3 OS=Homo sap... [more]
PPP5_ARATH9.659e-1228.45Serine/threonine-protein phosphatase 5 OS=Arabidop... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA78AH09RM1 IVIA1 Citrus clementina cDNA clone IC0AAA78AH09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877968 ID=FC877968; Name=FC877968; organism=Citrus clementina; type=EST; length=805bp
ACTTTTTACTTTTCTCTCACGACTTGAGATACTCCCAAATACACTTAATA
CCCGTACACGACTTTTACGACCGCCAACATGGCCGACGCTCTGAAAGCCG
AAGGCAACAAGCTGTTTGCCGCCAAAGACTTTGCCGGTGCTGCTGAGAAG
TTCTCCGAAGCCATTGCCCTCGATCCCTCAAACCACGTTCTCTACTCCAA
CCGATCAGGCGCCTACGCCTCGCTCAAAAACTTCGACAAGGCCCTCGAGG
ATGCAAACAAGACCACTGAGCTGAAGGCCGACTGGGCAAAGGGCTGGGGA
AGGAAAGGTGCCGCTCTCCACGGTGTCGGCGACTTGGTCGAGGCCGTCGA
CGCTTTCGAGCACGCGCTCAGCCTCGAGCCCACCAACGCACAGGCTAAGG
CTGGTCTCGAGAGCGTGAGGCGCGCGATCGACGCTGAGGCAAAGGCCGAT
GGCCTTCCCGGCGACCCCAGCGGTGGCCTCGGCAACATGTTCAACGACCC
TAAGATGATTGAGAAGCTGGCCTCGAACCCCAAGACCGCCGGTCTCCTCG
GCGACTCTGCTTTCATGGCCAAGATACAGCAATTGAAGAATAACCCTAAC
GCAATGGGCGAGATGATGGGCGACCCCAGAATGCTTCAGGTCATGGGCGT
GCTACTTGGTGTTGACATGTCTTTCGGCAACCCGGAGGATGTTGGAAAGG
CCGCAAACGCTGAGGCTGAGGAGGATGTTGAGATGAAAGACGCAAGACCC
ACCCCAACTCAAAGCAAGAAGGCCCCCGAGCCTGAGCCCGAGCCAGAGCC
CGAGC
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