FC877968

Overview
NameFC877968
Unique NameFC877968
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length805
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC877968 vs. ExPASy Swiss-Prot
Match: RPAP3_MOUSE (RNA polymerase II-associated protein 3 OS=Mus musculus GN=Rpap3 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.152e-11
Identity = 40/116 (34.48%), Postives = 60/116 (51.72%), Query Frame = 1
Query:   91 LKAEGNKLFAAKDFAGAAEKFSEAIALDPSNHVLYSNRSGAYASLKNFDKALEDANKTTELKADWAKGWGRKGAALHGVGDLVEAVDAFEHALSLEPTNAQAKAGLESVRRAIDAE 438
            LK +GNK F    +  A E +++ +  DP N VL +NR+ AY  LK F  A  D N    L   + K + R+GAA   +  L +A   +E  L LEP N +A   L  + +A+ ++
Sbjct:  137 LKEKGNKYFKQGKYDEAIECYTKGMDADPYNPVLPTNRASAYFRLKKFAVAESDCNLAIALSRTYTKAYARRGAARFALQKLEDARKDYEKVLELEPDNFEATNELRKINQALTSK 252          
BLAST of FC877968 vs. ExPASy Swiss-Prot
Match: DYXC1_MOUSE (Dyslexia susceptibility 1 candidate gene 1 protein homolog OS=Mus musculus GN=Dyx1c1 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.670e-11
Identity = 45/127 (35.43%), Postives = 67/127 (52.76%), Query Frame = 1
Query:   85 DALKAEGNKLFAAKDFAGAAEKFSEAIALDPSNHVLYSNRSGAYASLKNFDKALEDANKTTEL----KADWA----KGWGRKGAALHGVGDLVEAVDAFEHALSLEPTNAQAKAGLESVRRAIDAEA 441
            D LK +GNKLFA +++  A + ++ AI L+    +LY NR+  +  LKN  KA+ED++K  EL     AD A    K   R+G A   +   VE +  +E AL ++P N   +   E +R  I   A
Sbjct:  289 DWLKDKGNKLFATENYLAAVDAYNLAIRLNCKIPLLYLNRAACHLKLKNLHKAIEDSSKALELLTPPVADNANARMKAHVRRGTAFCQLELYVEGLQDYEAALKIDPANTVVQNDAEKIRNIIQGTA 415          
BLAST of FC877968 vs. ExPASy Swiss-Prot
Match: UN45A_PONAB (Protein unc-45 homolog A OS=Pongo abelii GN=UNC45A PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.794e-11
Identity = 40/127 (31.50%), Postives = 67/127 (52.76%), Query Frame = 1
Query:   73 ANMADALKAEGNKLFAAKDFAGAAEKFSEAIALDPSNH---VLYSNRSGAYASLKNFDKALEDANKTTELKADWAKGWGRKGAALHGVGDLVEAVDAFEHALSLEPTNAQAKAGLESVRRAIDAEAK 444
            A+  + L+ EGN+LF   D+ GA   +++A+ LD +     VL+ NR+  Y  L+++DKA  +A+K  E      K   R+  AL  +G L +AV   +  +SLEP N   +  L ++   I  + +
Sbjct:    3 ASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACYLKLEDYDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNIGGQIQEKVR 129          
BLAST of FC877968 vs. ExPASy Swiss-Prot
Match: RPAP3_CHICK (RNA polymerase II-associated protein 3 OS=Gallus gallus GN=RPAP3 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.794e-11
Identity = 38/109 (34.86%), Postives = 59/109 (54.13%), Query Frame = 1
Query:  103 GNKLFAAKDFAGAAEKFSEAIALDPSNHVLYSNRSGAYASLKNFDKALEDANKTTELKADWAKGWGRKGAALHGVGDLVEAVDAFEHALSLEPTNAQAKAGLESVRRAI 429
            GN  F    +  A E ++  IA D +N +L +NR+ AY  ++ +++A  D  +   L A ++K + R+GAA   +G L EA+  FE  L LEP N QA   L  +R  +
Sbjct:  290 GNGYFKEGKYEAAIECYTRGIAADGTNALLPANRAMAYLKIQKYEEAENDCTQALLLDASYSKAFARRGAARVALGKLKEAMQDFEAVLKLEPGNKQAINELTKIRNEL 398          
The following BLAST results are available for this feature:
BLAST of FC877968 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
RPAP3_MOUSE2.152e-1134.48RNA polymerase II-associated protein 3 OS=Mus musc... [more]
DYXC1_MOUSE3.670e-1135.43Dyslexia susceptibility 1 candidate gene 1 protein... [more]
UN45A_PONAB4.794e-1131.50Protein unc-45 homolog A OS=Pongo abelii GN=UNC45A... [more]
RPAP3_CHICK4.794e-1134.86RNA polymerase II-associated protein 3 OS=Gallus g... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA78AH09RM1 IVIA1 Citrus clementina cDNA clone IC0AAA78AH09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877968 ID=FC877968; Name=FC877968; organism=Citrus clementina; type=EST; length=805bp
ACTTTTTACTTTTCTCTCACGACTTGAGATACTCCCAAATACACTTAATA
CCCGTACACGACTTTTACGACCGCCAACATGGCCGACGCTCTGAAAGCCG
AAGGCAACAAGCTGTTTGCCGCCAAAGACTTTGCCGGTGCTGCTGAGAAG
TTCTCCGAAGCCATTGCCCTCGATCCCTCAAACCACGTTCTCTACTCCAA
CCGATCAGGCGCCTACGCCTCGCTCAAAAACTTCGACAAGGCCCTCGAGG
ATGCAAACAAGACCACTGAGCTGAAGGCCGACTGGGCAAAGGGCTGGGGA
AGGAAAGGTGCCGCTCTCCACGGTGTCGGCGACTTGGTCGAGGCCGTCGA
CGCTTTCGAGCACGCGCTCAGCCTCGAGCCCACCAACGCACAGGCTAAGG
CTGGTCTCGAGAGCGTGAGGCGCGCGATCGACGCTGAGGCAAAGGCCGAT
GGCCTTCCCGGCGACCCCAGCGGTGGCCTCGGCAACATGTTCAACGACCC
TAAGATGATTGAGAAGCTGGCCTCGAACCCCAAGACCGCCGGTCTCCTCG
GCGACTCTGCTTTCATGGCCAAGATACAGCAATTGAAGAATAACCCTAAC
GCAATGGGCGAGATGATGGGCGACCCCAGAATGCTTCAGGTCATGGGCGT
GCTACTTGGTGTTGACATGTCTTTCGGCAACCCGGAGGATGTTGGAAAGG
CCGCAAACGCTGAGGCTGAGGAGGATGTTGAGATGAAAGACGCAAGACCC
ACCCCAACTCAAAGCAAGAAGGCCCCCGAGCCTGAGCCCGAGCCAGAGCC
CGAGC
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