FC877980
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC877980 vs. ExPASy Swiss-Prot
Match: PUSH_ARATH (Putative tRNA pseudouridine synthase OS=Arabidopsis thaliana GN=At2g30320 PE=2 SV=1) HSP 1 Score: 91.6633 bits (226), Expect = 5.885e-18 Identity = 59/200 (29.50%), Postives = 101/200 (50.50%), Query Frame = 1 Query: 109 PKRLKMSATTT-SDDERDLIPAAAGADSTTKRQLCKRRKIAIFFAYCGVGYQGMQ---KNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDKGVSAVGQVVSGRFCI-------DPPG--LVERLNYNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYLLPVFALDSSSHRDRESVMASLGSGNELVKCLE 669 P L+ S++ L P ++ K + +++K+ I Y G Y+G+Q +P KTIEG+LE A++ +G + + + G+ + WARS+RTDKGV ++ +S + I DP G L + ++ +LP IR+F F+ ++ C R+Y YLLPV L + + + + NE++K E Sbjct: 26 PALLRFSSSAAFQPSSTSLSPPSSDNFLADKWESYRKKKVVIRIGYVGTDYRGLQIQRDDPSIKTIEGELEVAIYKAGGIRDSNYGDLHKIGWARSSRTDKGVHSLATSISLKMEIPETAWKDDPQGTVLAKCISKHLPENIRVFSVLPSNRRFDPRRECTLRKYSYLLPVDVLGIKNSFTSDEIDYHITDFNEILKEFE 225
BLAST of FC877980 vs. ExPASy Swiss-Prot
Match: PUS1_CANAL (tRNA pseudouridine synthase 1 OS=Candida albicans GN=PUS1 PE=3 SV=1) HSP 1 Score: 75.0998 bits (183), Expect = 5.700e-13 Identity = 35/77 (45.45%), Postives = 51/77 (66.23%), Query Frame = 1 Query: 361 RRYDWARSARTDKGVSAVGQVVSGRFCIDPPGLVERLNYNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYLLPVFAL 591 ++ + R+ARTDKGV A G V+S + I+ P ++ ++N LP QIRI+G +R T F+ +K C R Y YLLP F+L Sbjct: 37 KKSGFQRAARTDKGVHAAGNVISLKMIIEDPEIINKINDLLPKQIRIWGIQRATKGFDCRKCCSSRIYEYLLPTFSL 113
BLAST of FC877980 vs. ExPASy Swiss-Prot
Match: YCG6_SCHPO (Putative tRNA pseudouridine synthase C16C4.06c OS=Schizosaccharomyces pombe GN=SPCC16C4.06c PE=2 SV=2) HSP 1 Score: 72.7886 bits (177), Expect = 2.829e-12 Identity = 46/130 (35.38%), Postives = 69/130 (53.08%), Query Frame = 1 Query: 211 KRRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDKGVSAVGQVVSGRFCIDP---PGLVERLNYNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYLLPVFAL 591 ++R + +Y G G+ G+Q N KTI+ L +A GAV + + +P++ +ARTDKGV A+ V+ G +D P +V +N LP IR++ R SF+ CD R Y Y LPV +L Sbjct: 35 RKRMVYCVVSYRGTGFAGLQYNANVKTIQDTLFQAFARVGAVVQVNADSPKKIRMCSAARTDKGVHAIVNVL-GLKVLDNQPLPHVVNLVNDILPPCIRVWKMARTFNSFSPHTVCDSRVYEYWLPVSSL 163
BLAST of FC877980 vs. ExPASy Swiss-Prot
Match: PUS2_SCHPO (tRNA pseudouridine synthase 2 OS=Schizosaccharomyces pombe GN=pus2 PE=2 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 1.404e-11 Identity = 47/128 (36.72%), Postives = 64/128 (50.00%), Query Frame = 1 Query: 220 KIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDKGVSAVGQVVSGRFCIDPPG----LVERLNYNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYLLPVFAL 591 +I I Y G GY G+Q N KTIEGD+ L G + + + AR+ARTDKGV + ++S +D P L LN L +QIR++ FN + C+ R Y YL+P FAL Sbjct: 40 RIIILLGYSGYGYHGIQINNPLKTIEGDVVAVLKKLGYLKTNNI-DAEHLCIARAARTDKGVHTLRNLISLNLFVDKPLDISLLKTELNEALCSQIRVWSVFPAPKYFNPRISCESRTYEYLIPSFAL 166
BLAST of FC877980 vs. ExPASy Swiss-Prot
Match: YL85_SCHPO (Putative tRNA pseudouridine synthase C25B8.05 OS=Schizosaccharomyces pombe GN=SPAC25B8.05 PE=2 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 1.834e-11 Identity = 66/215 (30.70%), Postives = 97/215 (45.12%), Query Frame = 1 Query: 52 ETNTEKLPSPSLSPRQEPDPKRLKMSATTTSDDE---RDLIPAAAGADSTTKR--------QLCKRRKIAIFFAYCGVGYQGM--QKNPGA-KTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDKGVSAVGQVVSGRFCID---PPGLVERLNYNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYLLPVFALDSSSHRDRESVMASLGSG 645 + NT LP+ + + E + K+ + + ++L+ A D+++ QL K +A FAYCG Y G+ Q P T+EG + EAL + +++ P ++R RTDKGVSA+GQV+S P + LN LP IRI GY F+A+ C QR Y YL S DR + A+L G Sbjct: 26 QKNTNSLPNKEIEGKNEVIKNKNKLDNGNEIEPQHLSQELVLQHALQDASSLPKLKPVRPFQLEKTVFVAFKFAYCGWNYNGLAYQLEPTPLPTVEGKVFEALLRAHLITD-----PSSCSFSRCGRTDKGVSAMGQVISLNVRHSERRPIIYCDVLNRLLPADIRITGYAFPPEGFDARFSCKQRHYKYLFTKDYPGGSLDIDRMNEAAALYLG 235 The following BLAST results are available for this feature:
BLAST of FC877980 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 15
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Sequences
The
following sequences are available for this feature:
EST sequence >FC877980 ID=FC877980; Name=FC877980; organism=Citrus clementina; type=EST; length=863bpback to top |