FC877980

Overview
NameFC877980
Unique NameFC877980
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length863
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC877980 vs. ExPASy Swiss-Prot
Match: PUSH_ARATH (Putative tRNA pseudouridine synthase OS=Arabidopsis thaliana GN=At2g30320 PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 5.885e-18
Identity = 59/200 (29.50%), Postives = 101/200 (50.50%), Query Frame = 1
Query:  109 PKRLKMSATTT-SDDERDLIPAAAGADSTTKRQLCKRRKIAIFFAYCGVGYQGMQ---KNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDKGVSAVGQVVSGRFCI-------DPPG--LVERLNYNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYLLPVFALDSSSHRDRESVMASLGSGNELVKCLE 669
            P  L+ S++         L P ++      K +  +++K+ I   Y G  Y+G+Q    +P  KTIEG+LE A++ +G + + + G+  +  WARS+RTDKGV ++   +S +  I       DP G  L + ++ +LP  IR+F        F+ ++ C  R+Y YLLPV  L   +    + +   +   NE++K  E
Sbjct:   26 PALLRFSSSAAFQPSSTSLSPPSSDNFLADKWESYRKKKVVIRIGYVGTDYRGLQIQRDDPSIKTIEGELEVAIYKAGGIRDSNYGDLHKIGWARSSRTDKGVHSLATSISLKMEIPETAWKDDPQGTVLAKCISKHLPENIRVFSVLPSNRRFDPRRECTLRKYSYLLPVDVLGIKNSFTSDEIDYHITDFNEILKEFE 225          
BLAST of FC877980 vs. ExPASy Swiss-Prot
Match: PUS1_CANAL (tRNA pseudouridine synthase 1 OS=Candida albicans GN=PUS1 PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 5.700e-13
Identity = 35/77 (45.45%), Postives = 51/77 (66.23%), Query Frame = 1
Query:  361 RRYDWARSARTDKGVSAVGQVVSGRFCIDPPGLVERLNYNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYLLPVFAL 591
            ++  + R+ARTDKGV A G V+S +  I+ P ++ ++N  LP QIRI+G +R T  F+ +K C  R Y YLLP F+L
Sbjct:   37 KKSGFQRAARTDKGVHAAGNVISLKMIIEDPEIINKINDLLPKQIRIWGIQRATKGFDCRKCCSSRIYEYLLPTFSL 113          
BLAST of FC877980 vs. ExPASy Swiss-Prot
Match: YCG6_SCHPO (Putative tRNA pseudouridine synthase C16C4.06c OS=Schizosaccharomyces pombe GN=SPCC16C4.06c PE=2 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 2.829e-12
Identity = 46/130 (35.38%), Postives = 69/130 (53.08%), Query Frame = 1
Query:  211 KRRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDKGVSAVGQVVSGRFCIDP---PGLVERLNYNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYLLPVFAL 591
            ++R +    +Y G G+ G+Q N   KTI+  L +A    GAV + +  +P++     +ARTDKGV A+  V+ G   +D    P +V  +N  LP  IR++   R   SF+    CD R Y Y LPV +L
Sbjct:   35 RKRMVYCVVSYRGTGFAGLQYNANVKTIQDTLFQAFARVGAVVQVNADSPKKIRMCSAARTDKGVHAIVNVL-GLKVLDNQPLPHVVNLVNDILPPCIRVWKMARTFNSFSPHTVCDSRVYEYWLPVSSL 163          
BLAST of FC877980 vs. ExPASy Swiss-Prot
Match: PUS2_SCHPO (tRNA pseudouridine synthase 2 OS=Schizosaccharomyces pombe GN=pus2 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.404e-11
Identity = 47/128 (36.72%), Postives = 64/128 (50.00%), Query Frame = 1
Query:  220 KIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDKGVSAVGQVVSGRFCIDPPG----LVERLNYNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYLLPVFAL 591
            +I I   Y G GY G+Q N   KTIEGD+   L   G +   +  +      AR+ARTDKGV  +  ++S    +D P     L   LN  L +QIR++        FN +  C+ R Y YL+P FAL
Sbjct:   40 RIIILLGYSGYGYHGIQINNPLKTIEGDVVAVLKKLGYLKTNNI-DAEHLCIARAARTDKGVHTLRNLISLNLFVDKPLDISLLKTELNEALCSQIRVWSVFPAPKYFNPRISCESRTYEYLIPSFAL 166          
BLAST of FC877980 vs. ExPASy Swiss-Prot
Match: YL85_SCHPO (Putative tRNA pseudouridine synthase C25B8.05 OS=Schizosaccharomyces pombe GN=SPAC25B8.05 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.834e-11
Identity = 66/215 (30.70%), Postives = 97/215 (45.12%), Query Frame = 1
Query:   52 ETNTEKLPSPSLSPRQEPDPKRLKMSATTTSDDE---RDLIPAAAGADSTTKR--------QLCKRRKIAIFFAYCGVGYQGM--QKNPGA-KTIEGDLEEALFHSGAVSERDRGNPRRYDWARSARTDKGVSAVGQVVSGRFCID---PPGLVERLNYNLPTQIRIFGYKRVTASFNAKKFCDQRRYVYLLPVFALDSSSHRDRESVMASLGSG 645
            + NT  LP+  +  + E    + K+      + +   ++L+   A  D+++          QL K   +A  FAYCG  Y G+  Q  P    T+EG + EAL  +  +++     P    ++R  RTDKGVSA+GQV+S         P    + LN  LP  IRI GY      F+A+  C QR Y YL        S   DR +  A+L  G
Sbjct:   26 QKNTNSLPNKEIEGKNEVIKNKNKLDNGNEIEPQHLSQELVLQHALQDASSLPKLKPVRPFQLEKTVFVAFKFAYCGWNYNGLAYQLEPTPLPTVEGKVFEALLRAHLITD-----PSSCSFSRCGRTDKGVSAMGQVISLNVRHSERRPIIYCDVLNRLLPADIRITGYAFPPEGFDARFSCKQRHYKYLFTKDYPGGSLDIDRMNEAAALYLG 235          
The following BLAST results are available for this feature:
BLAST of FC877980 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
PUSH_ARATH5.885e-1829.50Putative tRNA pseudouridine synthase OS=Arabidopsi... [more]
PUS1_CANAL5.700e-1345.45tRNA pseudouridine synthase 1 OS=Candida albicans ... [more]
YCG6_SCHPO2.829e-1235.38Putative tRNA pseudouridine synthase C16C4.06c OS=... [more]
PUS2_SCHPO1.404e-1136.72tRNA pseudouridine synthase 2 OS=Schizosaccharomyc... [more]
YL85_SCHPO1.834e-1130.70Putative tRNA pseudouridine synthase C25B8.05 OS=S... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA78AH11RM1 IVIA1 Citrus clementina cDNA clone IC0AAA78AH11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877980 ID=FC877980; Name=FC877980; organism=Citrus clementina; type=EST; length=863bp
CTCGAACACATCGAAGTACTCTCACTCTGCTAACTGAAAATGGAAAACGC
AGAAACCAACACCGAAAAATTGCCATCCCCATCACTGTCGCCACGACAAG
AACCAGATCCCAAAAGGCTCAAAATGTCCGCAACCACCACCTCCGACGAC
GAACGCGACCTCATCCCCGCCGCCGCAGGCGCCGATTCTACCACTAAAAG
ACAGCTATGCAAGCGCCGCAAGATAGCCATATTCTTCGCATACTGCGGCG
TCGGCTACCAAGGCATGCAAAAGAACCCAGGCGCCAAAACCATCGAAGGC
GATCTCGAAGAAGCCCTCTTCCACTCCGGTGCTGTCTCTGAACGGGACCG
TGGCAACCCCAGGCGATATGACTGGGCCCGCTCGGCCCGAACCGATAAGG
GTGTAAGCGCCGTGGGCCAGGTTGTATCGGGTCGGTTTTGTATCGACCCG
CCCGGTCTTGTTGAAAGACTTAATTATAATCTCCCCACTCAGATTCGGAT
TTTTGGTTACAAGCGTGTGACGGCGTCGTTTAACGCCAAGAAGTTTTGCG
ATCAGAGGAGGTATGTGTATCTTCTTCCTGTATTTGCTCTTGATTCATCT
TCTCATAGGGATAGAGAGAGTGTTATGGCTAGTTTAGGGTCTGGTAATGA
ACTTGTTAAGTGTTTAGAGTGTTCTGAAAGAGGCCGTANAGTAATTGGTG
TTATGGGTAAGCGTACTTATCAGTTAGGCCTTCCGTCTAACGATGAGAAT
GCAAGTTTGAACTCTCAAGTTAAAGTTGATACTGTAGTCTCCACTTGCAA
TGGTGATAGGCATAATACAAATCTAGAATCTGTAGAGAGCAATAAAACAA
TTTCAGAATCCGC
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