FC877992

Overview
NameFC877992
Unique NameFC877992
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length931
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC877992 vs. ExPASy Swiss-Prot
Match: ERLN2_DANRE (Erlin-2 OS=Danio rerio GN=erlin2 PE=2 SV=1)

HSP 1 Score: 287.73 bits (735), Expect = 6.288e-77
Identity = 141/240 (58.75%), Postives = 181/240 (75.42%), Query Frame = 1
Query:  205 HQIPEGHVGVYWRGGALLETITHPGFHLKLPLITHYEPVQVTLQTDQVTDIPCGTKGGVMINFEKIEVVNRLRKEYVYETLRDYGVQYDKTWIYDKIHHEINQFCSSHSLQQVYIDVFDQIDEKMKDALQVDCTRYAPGIEIISVRVTKPTIPDRIRRNFEQMEEERTRVLIAIEKQKVAEKEAETSKKMAISEAEKNANVSKILMEQKLMEKDSARKXEEIDNQMYLARQRGLADADFY 924
            H+I EGHVGVY+RGGALL   + PGFHL LP IT ++ VQ TLQTD+V ++PCGT GGVMI F++IEVVN L    VY  +R++   YDK  I++K+HHE+NQFCS H+LQ VYI +FDQIDE +K  LQ D T  APG+ I +VRVTKP IP+ IRRN+E ME ERT++LIA + QKV EKEAET +K A+ EAEK A V++I   QK+MEK++ +K  +I++  YLARQ+  ADA+FY
Sbjct:   23 HKIEEGHVGVYYRGGALLTATSGPGFHLMLPFITTFKSVQTTLQTDEVKNVPCGTGGGVMIYFDRIEVVNYLVPSAVYGIVRNFTADYDKALIFNKVHHELNQFCSVHTLQDVYIGLFDQIDENLKLTLQEDLTSMAPGLIIQAVRVTKPNIPESIRRNYELMESERTKLLIAAQTQKVVEKEAETERKKAVIEAEKVAQVAEIKFGQKVMEKETEKKISQIEDSAYLARQKAKADAEFY 262          
BLAST of FC877992 vs. ExPASy Swiss-Prot
Match: ERLN1_XENTR (Erlin-1 OS=Xenopus tropicalis GN=erlin1 PE=2 SV=1)

HSP 1 Score: 286.574 bits (732), Expect = 1.401e-76
Identity = 136/240 (56.67%), Postives = 184/240 (76.67%), Query Frame = 1
Query:  205 HQIPEGHVGVYWRGGALLETITHPGFHLKLPLITHYEPVQVTLQTDQVTDIPCGTKGGVMINFEKIEVVNRLRKEYVYETLRDYGVQYDKTWIYDKIHHEINQFCSSHSLQQVYIDVFDQIDEKMKDALQVDCTRYAPGIEIISVRVTKPTIPDRIRRNFEQMEEERTRVLIAIEKQKVAEKEAETSKKMAISEAEKNANVSKILMEQKLMEKDSARKXEEIDNQMYLARQRGLADADFY 924
            H++ EGH+ VY+RGGALL     PG+H+  P IT++  VQ TLQTD+V ++PCGT GGVMI F++IEVVN L    VY+ +R+Y   YDKT I++KIHHE+NQFCSSH+LQ+VYI++FDQIDE +K +LQ++    APG+ I +VRVTKP IP+ IRRNFE ME E+T++LIA ++QKV EKEAET +K A+ EAEK A V+KI   QK+MEK++ +   EI++  YLAR++  ADA++Y
Sbjct:   24 HKVEEGHLAVYYRGGALLGGPGDPGYHIMFPFITYFRSVQTTLQTDEVKNVPCGTSGGVMIYFDRIEVVNMLTPSAVYDVVRNYTADYDKTLIFNKIHHELNQFCSSHTLQEVYIELFDQIDENLKLSLQMELNVMAPGLTIQAVRVTKPKIPEAIRRNFELMESEKTKLLIAEQRQKVVEKEAETERKKAVIEAEKVAQVAKIQYRQKVMEKETEKFISEIEDSAYLAREKAKADAEYY 263          
BLAST of FC877992 vs. ExPASy Swiss-Prot
Match: ERL2A_XENLA (Erlin-2-A OS=Xenopus laevis GN=erlin2-A PE=2 SV=1)

HSP 1 Score: 286.189 bits (731), Expect = 1.830e-76
Identity = 139/240 (57.92%), Postives = 185/240 (77.08%), Query Frame = 1
Query:  205 HQIPEGHVGVYWRGGALLETITHPGFHLKLPLITHYEPVQVTLQTDQVTDIPCGTKGGVMINFEKIEVVNRLRKEYVYETLRDYGVQYDKTWIYDKIHHEINQFCSSHSLQQVYIDVFDQIDEKMKDALQVDCTRYAPGIEIISVRVTKPTIPDRIRRNFEQMEEERTRVLIAIEKQKVAEKEAETSKKMAISEAEKNANVSKILMEQKLMEKDSARKXEEIDNQMYLARQRGLADADFY 924
            H+I EGHVGVY+RGGALL T + PGFHL  P IT ++ VQ TLQTD++ ++PCGT GGVMI F++IEVVN L    VY+ ++++   YDK  I++KIHHE+NQFCS H+LQ+VYI++FDQIDE +K ALQ D    APGI I +VRVTKP IP+ I RNFE ME E+T++LIA +KQKV EKEAET +K AI EAEK A V++I  +QK+MEK++ +K  EI++  ++AR++  ADA++Y
Sbjct:   24 HKIEEGHVGVYYRGGALLSTTSGPGFHLMFPFITSFKSVQSTLQTDEIKNVPCGTSGGVMIYFDRIEVVNYLISSAVYDIVKNFTADYDKALIFNKIHHELNQFCSVHNLQEVYIELFDQIDENLKLALQEDLNLMAPGIIIQAVRVTKPKIPEAIGRNFELMEGEKTKLLIAAQKQKVVEKEAETERKKAIIEAEKVAQVAQIKYKQKVMEKETEKKISEIEDFAFVAREKARADAEYY 263          
BLAST of FC877992 vs. ExPASy Swiss-Prot
Match: ERLN1_DANRE (Erlin-1 OS=Danio rerio GN=erlin1 PE=2 SV=1)

HSP 1 Score: 282.337 bits (721), Expect = 2.642e-75
Identity = 135/240 (56.25%), Postives = 182/240 (75.83%), Query Frame = 1
Query:  205 HQIPEGHVGVYWRGGALLETITHPGFHLKLPLITHYEPVQVTLQTDQVTDIPCGTKGGVMINFEKIEVVNRLRKEYVYETLRDYGVQYDKTWIYDKIHHEINQFCSSHSLQQVYIDVFDQIDEKMKDALQVDCTRYAPGIEIISVRVTKPTIPDRIRRNFEQMEEERTRVLIAIEKQKVAEKEAETSKKMAISEAEKNANVSKILMEQKLMEKDSARKXEEIDNQMYLARQRGLADADFY 924
            H+I EGH+ VY+RGGALL +   PG+H+ LP IT Y  VQ TLQTD++ ++PCGT GGVMI F++IEVVN L    V + +R+Y   YDKT I++KIHHE+NQFCS H+LQ+VYI++FD IDE +K ALQ D    APG+ I +VRVTKP IP+ IRRN+E ME E+TR+LI ++ QKV EKEAET +K AI EA+K A V++I  +QK+MEK++ +K  EI++  +LAR++  ADA++Y
Sbjct:   24 HKIEEGHLAVYYRGGALLTSPNGPGYHIMLPFITSYRSVQTTLQTDEIKNVPCGTSGGVMIYFDRIEVVNMLIPTSVVDIVRNYTADYDKTLIFNKIHHELNQFCSVHTLQEVYIELFDIIDENLKTALQKDLNCMAPGLTIQAVRVTKPKIPEAIRRNYELMEAEKTRLLITVQTQKVVEKEAETERKKAIIEAQKVAQVAEIQFQQKVMEKETEKKISEIEDAAFLAREKARADAEYY 263          
The following BLAST results are available for this feature:
BLAST of FC877992 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
ERLN2_DANRE6.288e-7758.75Erlin-2 OS=Danio rerio GN=erlin2 PE=2 SV=1[more]
ERLN1_XENTR1.401e-7656.67Erlin-1 OS=Xenopus tropicalis GN=erlin1 PE=2 SV=1[more]
ERL2A_XENLA1.830e-7657.92Erlin-2-A OS=Xenopus laevis GN=erlin2-A PE=2 SV=1[more]
ERLN1_DANRE2.642e-7556.25Erlin-1 OS=Danio rerio GN=erlin1 PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionIC0AAA73AG04RM1 IVIA1 Citrus clementina cDNA clone IC0AAA73AG04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877992 ID=FC877992; Name=FC877992; organism=Citrus clementina; type=EST; length=931bp
TCTCGCGCACATTTTGGCAACAGTTGAAACCCCGCCATGGATCCACAGCA
ACAAGGAGTAGGCGCTACACAGGCACAGCCTCGGCCTCAGCCTCAGCCTG
GCGATTCGTCTGCTATACTCGCCGTGTTCCTCACTTTCATCGCTATTGTC
TCACTGATATTGATCCCATCATCGTCATCCATCAAAAGTAGCCTGGCCAT
TTTGCACCAAATTCCAGAAGGCCACGTTGGAGTATATTGGAGAGGAGGTG
CCCTTCTAGAGACAATTACACACCCAGGCTTCCATCTGAAGTTGCCTTTG
ATAACACACTACGAGCCTGTTCAAGTGACCCTTCAGACAGATCAGGTTAC
TGACATTCCATGTGGGACCAAAGGGGGTGTAATGATCAACTTTGAGAAGA
TAGAGGTTGTTAACCGGCTTCGTAAGGAATATGTGTACGAGACTCTGCGC
GACTATGGCGTGCAATATGACAAGACATGGATATATGACAAGATTCATCA
TGAGATCAATCAGTTCTGTAGTTCTCATAGTCTGCAACAAGTCTATATTG
ATGTGTTTGATCAGATTGACGAAAAGATGAAGGATGCTCTTCAGGTTGAC
TGCACGCGTTATGCTCCAGGCATTGAAATTATCAGTGTGCGTGTTACAAA
GCCTACTATTCCAGATAGAATCAGAAGAAATTTTGAACAAATGGAAGAGG
AACGTACTAGGGTGTTAATTGCTATTGAGAAACAGAAAGTAGCTGAGAAA
GAGGCAGAGACAAGCAAAAAGATGGCTATCAGTGAAGCTGAGAAGAATGC
CAATGTTAGCAAGATCCTTATGGAACAGAAGTTGATGGAGAAGGACAGTG
CTCGGAAGCANGAGGAAATTGACAATCAAATGTACTTGGCTCGTCAAAGG
GGCCTGGCAGATGCTGATTTCTACCGCGTAC
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