FC877996

Overview
NameFC877996
Unique NameFC877996
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length905
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC877996 vs. ExPASy Swiss-Prot
Match: PTH_VIBC3 (Peptidyl-tRNA hydrolase OS=Vibrio cholerae serotype O1 (strain ATCC 39541 / Ogawa 395 / O395) GN=pth PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.464e-22
Identity = 59/188 (31.38%), Postives = 96/188 (51.06%), Query Frame = 1
Query:  337 LFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISM-NTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFHTIQ 897
            L VGL NPG +Y  TRHN G  +++  A    +++ N        G+  +    + +  P T+MNLSG++   LA +Y++    ++V HD++ LP GV               K  ++    N+EF RLR+GIG P  +     ++L K  A  +E +D A+ E V  L++L+  GLT++    HT +
Sbjct:    7 LLVGLANPGPEYAKTRHNAGAWVVEELARIHNVTLKNEPKFFGLTGRLLINSQELRVLIPTTFMNLSGKAIAALANFYQIKPEEIMVAHDELDLPPGVAKFKQGGGHGGHNGLKDTISKLGNNKEFYRLRLGIGHPGHKDKVAGYVLGKAPAKEQECLDAAVDESVRCLEILMKDGLTKAQNRLHTFK 194          
BLAST of FC877996 vs. ExPASy Swiss-Prot
Match: PTH_HAES2 (Peptidyl-tRNA hydrolase OS=Haemophilus somnus (strain 2336) GN=pth PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.912e-22
Identity = 56/188 (29.79%), Postives = 95/188 (50.53%), Query Frame = 1
Query:  337 LFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVH-CKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFHTIQ 897
            L VGLGNPGDKY  TRHN G  +I+  A     +++          +  +    +    P T+MNLSG++   LA +Y++P  ++LV HD++ LP G+               K ++     N+ F RLRIGIG P  +    +++L K +    + ID  L E  + +++L+ +G+T++    +  +
Sbjct:    6 LIVGLGNPGDKYADTRHNAGEWLIERLARRFNFNLSVESKFSGKTARAVISGQEMRFLVPTTFMNLSGKAVSALANFYRIPPEQILVLHDELDLPPGIAKLKQGGGHGGHNGLKDIIAQLANNKNFYRLRIGIGHPGDKNLVASYVLNKPSPTDWQLIDRTLDEATDCIEILMKEGITKATNRLNAFK 193          
BLAST of FC877996 vs. ExPASy Swiss-Prot
Match: PTH_ELUMP (Peptidyl-tRNA hydrolase OS=Elusimicrobium minutum (strain Pei191) GN=pth PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.912e-22
Identity = 58/184 (31.52%), Postives = 92/184 (50.00%), Query Frame = 1
Query:  337 LFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFH 888
            L VGLGNPG +Y  TRHN GF ++D  A   G++ N       + +  +G   V LAKP T+MNLSG     LA +YK+    +LV  DD+ +  G                K+++  F G ++  RLR G+G  P + D   ++L KF+    + ++ +++  VE  +  +  GL  +   F+
Sbjct:    4 LIVGLGNPGPQYAVTRHNAGFMIVDNLAVKLGVNFNAYKNLGEYVKTTIGGQDVFLAKPLTFMNLSGRMVTHLAGFYKIKPQEILVCFDDISINLGAVRIRKDGSAGGQNGMKNIIELF-GTQDIPRLRFGVGPKPERFDSADYVLSKFSKSDEKLLNESIEAAVEAAESCVKDGLERAMNKFN 186          
BLAST of FC877996 vs. ExPASy Swiss-Prot
Match: PTH_SYMTH (Peptidyl-tRNA hydrolase OS=Symbiobacterium thermophilum GN=pth PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 2.498e-22
Identity = 65/187 (34.76%), Postives = 94/187 (50.27%), Query Frame = 1
Query:  337 LFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVG--DAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFHT 891
            L VGLGNPG +Y  TRHN G+ ++DAFA   G+++     +  +G+   G     V+L KP TYMNLSG S    A +Y++    +LV  DD+ L  G                KSV+    G  EF RLRIGIGRP    +   ++L  F       +  AL   VE ++  L++G+  +   ++T
Sbjct:    4 LIVGLGNPGPRYAATRHNAGWMLLDAFARKHGVAIEQRGFEGLYGELRWGAEAEKVILLKPLTYMNLSGRSVAQAARFYRIAPADILVLFDDLDLEPGRLRLRAKGSAGGHNGVKSVIAEL-GTAEFPRLRIGIGRPAPGWEVIDWVLAPFGPDDAAAVAAALPRAVEAVECFLTEGILAAMNRYNT 189          
BLAST of FC877996 vs. ExPASy Swiss-Prot
Match: PTH_MARMS (Peptidyl-tRNA hydrolase OS=Marinomonas sp. (strain MWYL1) GN=pth PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 2.498e-22
Identity = 59/188 (31.38%), Postives = 91/188 (48.40%), Query Frame = 1
Query:  337 LFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVH-CKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFHTIQ 897
            L VGLGNPG +Y+ TRHN G + I+A A     S+ +       FG+ ++      L  P TYMNLSG++   +  +YK+P   VLV HD++ +P G                K +++    NREF RLRIGIG P        ++L+K       +I+ A+ E +  +  ++   L       H+ +
Sbjct:    6 LLVGLGNPGSEYENTRHNAGAQWIEALARQSQCSLRSEKKFFGQFGKVYIAGEECYLLIPTTYMNLSGKAVQAVCQFYKIPPEEVLVIHDELDIPPGTAKLKQGGGHGGHNGLKDIISKLANNREFGRLRIGIGHPGHASQVANYVLKKAAPDDYTKIEQAIDESLRYVDDIVRGNLNAVMNQLHSFK 193          
BLAST of FC877996 vs. ExPASy Swiss-Prot
Match: PTH_HAES1 (Peptidyl-tRNA hydrolase OS=Haemophilus somnus (strain 129Pt) GN=pth PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 2.498e-22
Identity = 55/188 (29.26%), Postives = 96/188 (51.06%), Query Frame = 1
Query:  337 LFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVH-CKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFHTIQ 897
            L VGLGNPGDKY  TRHN G  +I+  A     +++          +  +    +    P T+MNLSG++   LA +Y++P  ++LV HD++    G+               K ++     N+ F RLRIGIG P  +    +++L K +   R+ ID +L+E  + +++L+ +G+T++    +  +
Sbjct:    6 LIVGLGNPGDKYADTRHNAGEWLIERLARRFNFNLSVESKFSGKTARAVISGQEMRFLVPTTFMNLSGKAVSALANFYRIPPEQILVLHDELDFSPGIAKIKQGGGHGGHNGLKDIIAQLANNKNFYRLRIGIGHPGDKNLVASYVLNKPSPTDRQLIDRSLEEATDCIEILMKEGITKATNRLNAFK 193          
BLAST of FC877996 vs. ExPASy Swiss-Prot
Match: PTH_HAEIN (Peptidyl-tRNA hydrolase OS=Haemophilus influenzae GN=pth PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 2.498e-22
Identity = 60/190 (31.58%), Postives = 95/190 (50.00%), Query Frame = 1
Query:  337 LFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQG---FVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFHTIQ 897
            L VGLGNPGDKY  TRHN G  +I+  A    +S+N       FG+     V    V L  P T+MNLSG++ G LA++Y++    +LV HD++ LP G                K ++     N  F RLRIGIG P  +     ++L K +   R+ ++  L E  + ++++   G+ ++    ++ +
Sbjct:    6 LIVGLGNPGDKYTDTRHNAGEWLIERLARRFNVSLNPE--SKFFGKTARTLVNGKEVRLLVPTTFMNLSGKAVGALASFYRIKPEEILVIHDELDLPPGTAKLKQGGGHGGHNGLKDIVAQLGNNNNFYRLRIGIGHPGHRDLVAGYVLNKPSPADRDALEKVLDEATDCVEMIFRDGMVKATNRLNSFK 193          
BLAST of FC877996 vs. ExPASy Swiss-Prot
Match: PTH_ANADF (Peptidyl-tRNA hydrolase OS=Anaeromyxobacter sp. (strain Fw109-5) GN=pth PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 2.498e-22
Identity = 63/179 (35.20%), Postives = 89/179 (49.72%), Query Frame = 1
Query:  337 LFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTES 873
            L VGLGNPG +Y  TRHNVGF + D  A +           +   +G  G   V + KPQTYMN SGES G    ++KL L  ++V HDD+ L                   KSV N   G  ++AR+R+G+GRPP +MDP  ++L +F       ++  L    E  +L +  G  ++
Sbjct:    3 LVVGLGNPGPEYARTRHNVGFLVADRLALALRAEFTLRKFASELAEGRAGGERVWIMKPQTYMNHSGESVGSALHFWKLGLEDLVVVHDDLELEPFRVQLKVGGGHGGHNGLKSV-NAHVGGPDYARVRVGVGRPPPRMDPADYVLGRFAKADEAPLEECLVRATEAARLAIELGAAKA 180          
BLAST of FC877996 vs. ExPASy Swiss-Prot
Match: PTH_NITEC (Peptidyl-tRNA hydrolase OS=Nitrosomonas eutropha (strain C91) GN=pth PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 3.262e-22
Identity = 61/189 (32.28%), Postives = 93/189 (49.21%), Query Frame = 1
Query:  337 LFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNT-VHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFHTIQK 900
            L VGLGNPGDKY  TRHN+G + +D  A++Q +S    +  +    +    D  + L KPQTYMN SG S G +  YYK+   ++LV HD++ L  G+               KS++ +    + F RLRIG+G P  +     ++L          ID A+   ++V  L+       + +  HT Q+
Sbjct:    7 LVVGLGNPGDKYTSTRHNIGSDWLDRLADAQRVSFALDIRFRGLCARIVQSDTDIWLLKPQTYMNASGMSVGAMCRYYKITPEQILVVHDELDLQPGIIKLKSGGGTGGHNGLKSIVADL-STQVFWRLRIGVGHPGDRNQVVDYVLHLPRREEAALIDEAIDHSIQVWPLIARGNFAAAMQQLHTRQE 194          
BLAST of FC877996 vs. ExPASy Swiss-Prot
Match: PTH_HAEI8 (Peptidyl-tRNA hydrolase OS=Haemophilus influenzae (strain 86-028NP) GN=pth PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 3.262e-22
Identity = 59/190 (31.05%), Postives = 95/190 (50.00%), Query Frame = 1
Query:  337 LFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQG---FVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFHTIQ 897
            L VGLGNPG+KY  TRHN G  +I+  A    +S+N       FG+     V    V L  P T+MNLSG++ G LA++Y++    +LV HD++ LP G                K ++     N  F RLRIGIG P  +     ++L K +   R+ ++  L E  + ++++   G+ ++    ++ +
Sbjct:    6 LIVGLGNPGEKYADTRHNAGEWLIERLARRFNVSLNPE--SKFFGKTARTLVNGKEVRLLVPTTFMNLSGKAVGALASFYRIKPEEILVIHDELDLPAGTAKLKQGGGHGGHNGLKDIVAQLGNNNNFYRLRIGIGHPGHRDLVAGYVLNKPSPADRDALEKVLDEATDCVEIIFKDGMIKATNRLNSFK 193          
The following BLAST results are available for this feature:
BLAST of FC877996 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
PTH_VIBC31.464e-2231.38Peptidyl-tRNA hydrolase OS=Vibrio cholerae serotyp... [more]
PTH_HAES21.912e-2229.79Peptidyl-tRNA hydrolase OS=Haemophilus somnus (str... [more]
PTH_ELUMP1.912e-2231.52Peptidyl-tRNA hydrolase OS=Elusimicrobium minutum ... [more]
PTH_SYMTH2.498e-2234.76Peptidyl-tRNA hydrolase OS=Symbiobacterium thermop... [more]
PTH_MARMS2.498e-2231.38Peptidyl-tRNA hydrolase OS=Marinomonas sp. (strain... [more]
PTH_HAES12.498e-2229.26Peptidyl-tRNA hydrolase OS=Haemophilus somnus (str... [more]
PTH_HAEIN2.498e-2231.58Peptidyl-tRNA hydrolase OS=Haemophilus influenzae ... [more]
PTH_ANADF2.498e-2235.20Peptidyl-tRNA hydrolase OS=Anaeromyxobacter sp. (s... [more]
PTH_NITEC3.262e-2232.28Peptidyl-tRNA hydrolase OS=Nitrosomonas eutropha (... [more]
PTH_HAEI83.262e-2231.05Peptidyl-tRNA hydrolase OS=Haemophilus influenzae ... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA18DF10RM1 IVIA1 Citrus clementina cDNA clone IC0AAA18DF10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877996 ID=FC877996; Name=FC877996; organism=Citrus clementina; type=EST; length=905bp
CCTAATCTTAGTGAAAGAGAGAACGACACATTCACTCACACACGTCCTCT
CTGCAGCCACAGCCGCCGCTTACAAACGCCCCTCTAACCCTAAGCTGACA
AACGCCCACGCCCACGCCCACGCTGCCGGCGCTGTCACTTTGGTTCAAGT
GTGCCGACGCTGCAGCTTCTAGCCGTTCTCGATTTGCTTCCTCGTTCCAG
CTGCTGCGCTGCCTCCGGCTTCGTTCGCCGTCGTCAGCCGCACAAGTGAA
GTGGAAGGAAACTGAGAACATTTGAGGAGATGCTTATTAACAGGTTTCTG
AGGCGTGGTTTCTGCACTGCTGTTGCTCGGCCATGGCTTTTTGTGGGGTT
GGGTAACCCGGGAGATAAATACAAAGGAACTAGACACAATGTGGGGTTTG
AGATGATCGACGCATTTGCTGAATCACAAGGGATTTCTATGAACACGGTT
CATTGCAAAGCTACTTTCGGACAAGGTTTTGTTGGTGATGCCCCTGTACT
CCTTGCAAAGCCACAGACTTACATGAATCTGAGCGGTGAATCTACTGGAC
CACTTGCAGCTTATTATAAGTTACCTCTTAATCGTGTTCTTGTGTTTCAT
GATGACATGGGCTTACCTTGTGGAGTGCTTCGTCTGCGCCACAATGGAGG
TCATGGAGGCCACAATGGGCTGAAGAGTGTGATGAACAACTTTCGAGGTA
ACCGAGAATTTGCTCGGCTAAGAATTGGTATTGGGAGGCCTCCTGGTCAA
ATGGATCCTAAAGCTTTCTTGCTGCAGAAGTTTAATGCAATAGCTCGAGA
GCGAATTGATACTGCTTTGCAAGAAGGGGTTGAGGTTCTGAAGCTGCTTT
TATCTAAAGGCTTGACAGAAAGTGCTAGACATTTTCACACCATACAAAAA
TACAA
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