FC877996

Overview
NameFC877996
Unique NameFC877996
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length905
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC877996 vs. ExPASy Swiss-Prot
Match: PTH_DEHE1 (Peptidyl-tRNA hydrolase OS=Dehalococcoides ethenogenes (strain 195) GN=pth PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 4.399e-27
Identity = 68/188 (36.17%), Postives = 99/188 (52.66%), Query Frame = 1
Query:  337 LFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQ---MDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFHT 891
            L +GLGNPG +Y G RHNVGF+ +  FA+   IS +   C +  G G + D  ++LAKPQTYMNLSG++   L   Y L    ++V  DD+ LP G                 S++ +  G +EF RL+IGIG+P  +    +    +L  F    RE +D A+    E L  LL+ GL  ++  F++
Sbjct:    3 LIIGLGNPGKEYSGNRHNVGFQCLSRFAKDNHISFDKKCCLSRTGSGRINDEEIVLAKPQTYMNLSGKAASQLLRRYNLKAADIIVVQDDLDLPAGKIRLRLGGSAGGHNGISSIITDI-GTKEFIRLKIGIGKPDSRNNGTEVVDHVLGNFGGEEREIMDKAITRASEALTCLLTFGLDTASNRFNS 189          
BLAST of FC877996 vs. ExPASy Swiss-Prot
Match: PTH_BACCZ (Peptidyl-tRNA hydrolase OS=Bacillus cereus (strain ZK / E33L) GN=pth PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 4.399e-27
Identity = 67/185 (36.22%), Postives = 101/185 (54.59%), Query Frame = 1
Query:  337 LFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFHT 891
            L VGLGNPG +Y+ TRHN+GF  ID  A+   IS+N    K  FG GFV    V+L KP TYMNLSGES  PL  YYK+ +   +V +DD+ +P G                KS +++  G +EF R+R+GI RP   M    ++L +F +     ++ ++++  +  +  L+K   +    F++
Sbjct:    3 LIVGLGNPGREYELTRHNIGFMAIDELAKRWNISLNEQKFKGVFGAGFVNGEKVILLKPLTYMNLSGESIRPLMDYYKIDVEDFVVLYDDLDIPVGKLRLRMKGSAGGHNGVKSTISHL-GTQEFQRIRMGIDRPKNGMKVVDYVLGRFTSEEIPDVNHSIEKAADACEEWLNKPFLQIMNTFNS 186          
BLAST of FC877996 vs. ExPASy Swiss-Prot
Match: PTH_BACCR (Peptidyl-tRNA hydrolase OS=Bacillus cereus (strain ATCC 14579 / DSM 31) GN=pth PE=3 SV=2)

HSP 1 Score: 122.094 bits (305), Expect = 4.399e-27
Identity = 67/185 (36.22%), Postives = 101/185 (54.59%), Query Frame = 1
Query:  337 LFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFHT 891
            L VGLGNPG +Y+ TRHN+GF  ID  A+   IS+N    K  FG GFV    V+L KP TYMNLSGES  PL  YYK+ +   +V +DD+ +P G                KS +++  G +EF R+R+GI RP   M    ++L +F +     ++ ++++  +  +  L+K   +    F++
Sbjct:    3 LIVGLGNPGREYELTRHNIGFMAIDELAKRWNISLNEQKFKGVFGAGFVNGEKVILLKPLTYMNLSGESIRPLMDYYKIDVEDFVVMYDDLDIPVGKLRLRMKGSAGGHNGVKSTISHL-GTQEFQRIRMGIDRPKNGMKVVDYVLGRFTSEEIPDVNHSIEKAADACEEWLNKPFLQIMNTFNS 186          
BLAST of FC877996 vs. ExPASy Swiss-Prot
Match: PTH_BACCQ (Peptidyl-tRNA hydrolase OS=Bacillus cereus (strain Q1) GN=pth PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 4.399e-27
Identity = 67/185 (36.22%), Postives = 101/185 (54.59%), Query Frame = 1
Query:  337 LFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFHT 891
            L VGLGNPG +Y+ TRHN+GF  ID  A+   IS+N    K  FG GFV    V+L KP TYMNLSGES  PL  YYK+ +   +V +DD+ +P G                KS +++  G +EF R+R+GI RP   M    ++L +F +     ++ ++++  +  +  L+K   +    F++
Sbjct:    3 LIVGLGNPGREYELTRHNIGFMAIDELAKRWNISLNEQKFKGVFGAGFVNGEKVILLKPLTYMNLSGESIRPLMDYYKIDVEDFVVLYDDLDIPVGKLRLRMKGSAGGHNGVKSTISHL-GTQEFQRIRMGIDRPKNGMKVVDYVLGRFTSEEIPDVNHSIEKAADACEEWLNKPFLQIMNTFNS 186          
BLAST of FC877996 vs. ExPASy Swiss-Prot
Match: PTH_BACC1 (Peptidyl-tRNA hydrolase OS=Bacillus cereus (strain ATCC 10987) GN=pth PE=3 SV=2)

HSP 1 Score: 122.094 bits (305), Expect = 4.399e-27
Identity = 67/185 (36.22%), Postives = 101/185 (54.59%), Query Frame = 1
Query:  337 LFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFHT 891
            L VGLGNPG +Y+ TRHN+GF  ID  A+   IS+N    K  FG GFV    V+L KP TYMNLSGES  PL  YYK+ +   +V +DD+ +P G                KS +++  G +EF R+R+GI RP   M    ++L +F +     ++ ++++  +  +  L+K   +    F++
Sbjct:    3 LIVGLGNPGREYELTRHNIGFMAIDELAKRWNISLNEQKFKGVFGAGFVNGEKVILLKPLTYMNLSGESIRPLMDYYKIDVEDFVVLYDDLDIPVGKLRLRMKGSAGGHNGVKSTISHL-GTQEFQRIRMGIDRPKNGMKVVDYVLGRFTSEEIPGVNHSIEKAADACEEWLNKPFLQIMNTFNS 186          
BLAST of FC877996 vs. ExPASy Swiss-Prot
Match: PTH_GEOKA (Peptidyl-tRNA hydrolase OS=Geobacillus kaustophilus GN=pth PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 5.745e-27
Identity = 65/161 (40.37%), Postives = 90/161 (55.90%), Query Frame = 1
Query:  337 LFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTAL 819
            LFVGLGNPG +Y+ TRHNVGF +ID  A+   +S+ T   +  FG   V    V L KP TYMNLSGE   PL  YY + ++ V+V +DD+ LP G                KS++++  G  +F R+RIGIGRP G      ++L +F    +  +D A+
Sbjct:    3 LFVGLGNPGKEYEQTRHNVGFFVIDELAKRWNVSLKTAKFRGLFGTASVSGEKVALCKPLTYMNLSGECVRPLMDYYDIAIDDVIVIYDDLDLPPGKIRLRLKGSSGGHNGVKSLIHHL-GTEQFKRIRIGIGRPAGGQPVTDYVLGRFTEEEKPAVDKAV 162          
BLAST of FC877996 vs. ExPASy Swiss-Prot
Match: PTH_BACHK (Peptidyl-tRNA hydrolase OS=Bacillus thuringiensis subsp. konkukian GN=pth PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 5.745e-27
Identity = 67/185 (36.22%), Postives = 101/185 (54.59%), Query Frame = 1
Query:  337 LFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFHT 891
            L VGLGNPG +Y+ TRHN+GF  ID  A+   IS+N    K  FG GFV    V+L KP TYMNLSGES  PL  YYK+ +   +V +DD+ +P G                KS +++  G +EF R+R+GI RP   M    ++L +F +     ++ ++++  +  +  L+K   +    F++
Sbjct:    3 LIVGLGNPGREYELTRHNIGFMAIDELAKRWNISLNEQKFKGLFGAGFVNGEKVILLKPLTYMNLSGESIRPLMDYYKIDVEDFVVLYDDLDIPVGKLRLRMKGSAGGHNGVKSTISHL-GTQEFQRIRMGIDRPKNGMKVVDYVLGRFTSEEIPDVNHSIEKAADACEEWLNKPFLQIMNTFNS 186          
BLAST of FC877996 vs. ExPASy Swiss-Prot
Match: PTH_BACAN (Peptidyl-tRNA hydrolase OS=Bacillus anthracis GN=pth PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 5.745e-27
Identity = 67/185 (36.22%), Postives = 101/185 (54.59%), Query Frame = 1
Query:  337 LFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFHT 891
            L VGLGNPG +Y+ TRHN+GF  ID  A+   IS+N    K  FG GFV    V+L KP TYMNLSGES  PL  YYK+ +   +V +DD+ +P G                KS +++  G +EF R+R+GI RP   M    ++L +F +     ++ ++++  +  +  L+K   +    F++
Sbjct:    3 LIVGLGNPGREYELTRHNIGFMAIDELAKRWNISLNEQKFKGLFGAGFVNGEKVILLKPLTYMNLSGESIRPLMDYYKIDVEDFVVLYDDLDIPVGKLRLRMKGSAGGHNGVKSTISHL-GTQEFQRIRMGIDRPKNGMKVVDYVLGRFTSEEIPDVNHSIEKAADACEEWLNKPFLQIMNTFNS 186          
BLAST of FC877996 vs. ExPASy Swiss-Prot
Match: PTH_RHOSR (Peptidyl-tRNA hydrolase OS=Rhodococcus sp. (strain RHA1) GN=pth PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 9.799e-27
Identity = 63/186 (33.87%), Postives = 103/186 (55.38%), Query Frame = 1
Query:  337 LFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCK--ATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFH 888
            L VGLGNPG +Y+ TRHNVGF +    +   G   +  H K  A   QG     P +LAKP+++MNLSG +   LA ++ +    ++V HD++ L  G                +S+ +   G +++ R R+GIGRPPG+MDP +++L+ F+++ R+ +D   +E  + ++L+L  GL  +    H
Sbjct:    7 LVVGLGNPGPQYEKTRHNVGFMVAGVLSARMGGKFSA-HKKSGAEIVQGRFEGRPTILAKPRSFMNLSGSAVAGLARFFSVDPGNIVVIHDELDLDFGTIRLKQGGGEGGHNGLRSISSAL-GTKDYLRTRVGIGRPPGRMDPASYVLKPFSSVERKELDLVCEESADAVELVLRVGLEAAQNRLH 190          
BLAST of FC877996 vs. ExPASy Swiss-Prot
Match: PTH_BACSU (Peptidyl-tRNA hydrolase OS=Bacillus subtilis GN=spoVC PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 9.799e-27
Identity = 70/184 (38.04%), Postives = 92/184 (50.00%), Query Frame = 1
Query:  337 LFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFH 888
            +  GLGNPG  Y+ TRHNVGF +ID  A+   I +N       +G GFV    VLL KP TYMNLSGE   PL  YY +    + V +DD+ LP G                KS++ +  G  EF R+RIGIGRP   M    ++L  F       I+ A+ + V+  +  LSK   E    F+
Sbjct:    3 VIAGLGNPGKNYENTRHNVGFMVIDQLAKEWNIELNQNKFNGLYGTGFVSGKKVLLVKPLTYMNLSGECLRPLMDYYDVDNEDLTVIYDDLDLPTGKIRLRTKGSAGGHNGIKSLIQHL-GTSEFDRIRIGIGRPVNGMKVVDYVLGSFTKEEAPEIEEAVDKSVKACEASLSKPFLEVMNEFN 185          
The following BLAST results are available for this feature:
BLAST of FC877996 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
PTH_DEHE14.399e-2736.17Peptidyl-tRNA hydrolase OS=Dehalococcoides ethenog... [more]
PTH_BACCZ4.399e-2736.22Peptidyl-tRNA hydrolase OS=Bacillus cereus (strain... [more]
PTH_BACCR4.399e-2736.22Peptidyl-tRNA hydrolase OS=Bacillus cereus (strain... [more]
PTH_BACCQ4.399e-2736.22Peptidyl-tRNA hydrolase OS=Bacillus cereus (strain... [more]
PTH_BACC14.399e-2736.22Peptidyl-tRNA hydrolase OS=Bacillus cereus (strain... [more]
PTH_GEOKA5.745e-2740.37Peptidyl-tRNA hydrolase OS=Geobacillus kaustophilu... [more]
PTH_BACHK5.745e-2736.22Peptidyl-tRNA hydrolase OS=Bacillus thuringiensis ... [more]
PTH_BACAN5.745e-2736.22Peptidyl-tRNA hydrolase OS=Bacillus anthracis GN=p... [more]
PTH_RHOSR9.799e-2733.87Peptidyl-tRNA hydrolase OS=Rhodococcus sp. (strain... [more]
PTH_BACSU9.799e-2738.04Peptidyl-tRNA hydrolase OS=Bacillus subtilis GN=sp... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA18DF10RM1 IVIA1 Citrus clementina cDNA clone IC0AAA18DF10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877996 ID=FC877996; Name=FC877996; organism=Citrus clementina; type=EST; length=905bp
CCTAATCTTAGTGAAAGAGAGAACGACACATTCACTCACACACGTCCTCT
CTGCAGCCACAGCCGCCGCTTACAAACGCCCCTCTAACCCTAAGCTGACA
AACGCCCACGCCCACGCCCACGCTGCCGGCGCTGTCACTTTGGTTCAAGT
GTGCCGACGCTGCAGCTTCTAGCCGTTCTCGATTTGCTTCCTCGTTCCAG
CTGCTGCGCTGCCTCCGGCTTCGTTCGCCGTCGTCAGCCGCACAAGTGAA
GTGGAAGGAAACTGAGAACATTTGAGGAGATGCTTATTAACAGGTTTCTG
AGGCGTGGTTTCTGCACTGCTGTTGCTCGGCCATGGCTTTTTGTGGGGTT
GGGTAACCCGGGAGATAAATACAAAGGAACTAGACACAATGTGGGGTTTG
AGATGATCGACGCATTTGCTGAATCACAAGGGATTTCTATGAACACGGTT
CATTGCAAAGCTACTTTCGGACAAGGTTTTGTTGGTGATGCCCCTGTACT
CCTTGCAAAGCCACAGACTTACATGAATCTGAGCGGTGAATCTACTGGAC
CACTTGCAGCTTATTATAAGTTACCTCTTAATCGTGTTCTTGTGTTTCAT
GATGACATGGGCTTACCTTGTGGAGTGCTTCGTCTGCGCCACAATGGAGG
TCATGGAGGCCACAATGGGCTGAAGAGTGTGATGAACAACTTTCGAGGTA
ACCGAGAATTTGCTCGGCTAAGAATTGGTATTGGGAGGCCTCCTGGTCAA
ATGGATCCTAAAGCTTTCTTGCTGCAGAAGTTTAATGCAATAGCTCGAGA
GCGAATTGATACTGCTTTGCAAGAAGGGGTTGAGGTTCTGAAGCTGCTTT
TATCTAAAGGCTTGACAGAAAGTGCTAGACATTTTCACACCATACAAAAA
TACAA
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