FC877996

Overview
NameFC877996
Unique NameFC877996
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length905
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC877996 vs. ExPASy Swiss-Prot
Match: PTH_BACLD (Peptidyl-tRNA hydrolase OS=Bacillus licheniformis (strain DSM 13 / ATCC 14580) GN=pth PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 1.280e-26
Identity = 68/184 (36.96%), Postives = 93/184 (50.54%), Query Frame = 1
Query:  337 LFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFH 888
            +F GLGNPG  Y+ TRHNVGF  ID  ++   I ++       +G GFV    VLL KP TYMNLSGE   PL  YY++P++ + V +DD+ LP G                KS + +  G  EF R+RIGIGRP   M    ++L  F       I  A+++  +  +  L K   E    F+
Sbjct:    3 VFAGLGNPGKTYENTRHNVGFMTIDELSKEWNIPLDKTKFNGQYGIGFVSGKKVLLVKPLTYMNLSGECLRPLLDYYEIPVDNLKVIYDDLDLPTGRIRLRTKGSAGGHNGIKSTIQHL-GTSEFNRIRIGIGRPVNGMKVVDYVLGAFTDEEEPAIKEAVRQSAKACEASLEKPFLEVMNEFN 185          
BLAST of FC877996 vs. ExPASy Swiss-Prot
Match: PTH_RHOE4 (Peptidyl-tRNA hydrolase OS=Rhodococcus erythropolis (strain PR4 / NBRC 100887) GN=pth PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 2.183e-26
Identity = 64/186 (34.41%), Postives = 102/186 (54.84%), Query Frame = 1
Query:  337 LFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCK--ATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFH 888
            L +GLGNPG +Y+ TRHNVGF +    A   G   N VH K  A   +G +    V+L KP++YMNLSG +   LA ++ +    ++V HD++ L  G                +S+ ++    +++ R R+GIGRPPG+MDP  ++L+ F++  R+ +D   +E  + ++LLL  GL  +    H
Sbjct:    7 LVIGLGNPGPQYEKTRHNVGFMVAGTLAGRMGGKFN-VHKKSGAEIVEGRLAGRRVILGKPRSYMNLSGGAVAGLARFFSVDAANIIVVHDELDLDFGTIRLKLGGGEGGHNGLRSISSSLT-TKDYLRTRVGIGRPPGRMDPADYVLKPFSSTERKELDLVCEEAADAVELLLELGLEAAQNRLH 190          
BLAST of FC877996 vs. ExPASy Swiss-Prot
Match: PTH_DESRM (Peptidyl-tRNA hydrolase OS=Desulfotomaculum reducens (strain MI-1) GN=pth PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 2.183e-26
Identity = 73/189 (38.62%), Postives = 102/189 (53.97%), Query Frame = 1
Query:  337 LFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPP-GQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFHTIQK 900
            L VGLGNPG +Y  TRHN+GF +ID  A+   +S      KA   Q  +G   V+LAKPQTYMNLSG+S   L  +YKL  + + V  DDM LP GV               K+++    G ++F R+R+GIGRP  G +D    +L K +    E I+ A+Q  VE +K+ + +G   +   F+   K
Sbjct:    3 LIVGLGNPGTEYAKTRHNIGFMVIDRLADESRVSTEKNQHKAQICQITIGSEKVILAKPQTYMNLSGQSVVALMNWYKLSPDELFVITDDMDLPPGVLRIRKNGSAGGQRGLKNII-ELLGTQQFPRMRVGIGRPEHGAVD---HVLGKISEAEAELINPAIQTAVEAVKVWVLEGTQAAMNKFNQKNK 187          
BLAST of FC877996 vs. ExPASy Swiss-Prot
Match: PTH_CLOK5 (Peptidyl-tRNA hydrolase OS=Clostridium kluyveri (strain ATCC 8527 / DSM 555 / NCIMB 10680) GN=pth PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 2.183e-26
Identity = 65/185 (35.14%), Postives = 103/185 (55.68%), Query Frame = 1
Query:  334 WLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFH 888
            +L VGLGN G KY  TRHN+GF+ ID  ++   I++N    K  +G+GF+G   V+L KP TYMNLSGES      +YK+  +R+++ +DD+ +  G                K+++ N  G   F R++IGIG P   +D  +++L KF+   R  I+  L+  VE L+ ++  G+  +   F+
Sbjct:    2 FLIVGLGNIGVKYHRTRHNIGFDFIDLVSKKYNITLNREKFKGNYGEGFIGQNKVILLKPGTYMNLSGESVREAVNFYKIENDRMIIIYDDIDIDIGRFRIRHRGSAGGHNGIKNIILNL-GTDVFPRIKIGIGHP--NVDLVSYVLGKFSEDDRINIEKVLKTSVEALECIMDFGIEVAMNKFN 183          
BLAST of FC877996 vs. ExPASy Swiss-Prot
Match: PTH_CLOK1 (Peptidyl-tRNA hydrolase OS=Clostridium kluyveri (strain NBRC 12016) GN=pth PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 2.183e-26
Identity = 65/185 (35.14%), Postives = 103/185 (55.68%), Query Frame = 1
Query:  334 WLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFH 888
            +L VGLGN G KY  TRHN+GF+ ID  ++   I++N    K  +G+GF+G   V+L KP TYMNLSGES      +YK+  +R+++ +DD+ +  G                K+++ N  G   F R++IGIG P   +D  +++L KF+   R  I+  L+  VE L+ ++  G+  +   F+
Sbjct:    2 FLIVGLGNIGVKYHRTRHNIGFDFIDLVSKKYNITLNREKFKGNYGEGFIGQNKVILLKPGTYMNLSGESVREAVNFYKIENDRMIIIYDDIDIDIGRFRIRHRGSAGGHNGIKNIILNL-GTDVFPRIKIGIGHP--NVDLVSYVLGKFSEDDRINIEKVLKTSVEALECIMDFGIEVAMNKFN 183          
BLAST of FC877996 vs. ExPASy Swiss-Prot
Match: PTH_ARTCA (Peptidyl-tRNA hydrolase OS=Arthrobacter chlorophenolicus (strain A6 / ATCC 700700 / DSM 12829 / JCM 12360) GN=pth PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 2.183e-26
Identity = 62/187 (33.16%), Postives = 99/187 (52.94%), Query Frame = 1
Query:  334 WLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGF--VGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFH 888
            WL VGLGNPG +Y+G RHNVG  ++D  A   G    +   +A   +G   +G   V+LAKP TYMN+SG     LA +Y +  + V+  HD++ +P                  + +       +++ R+R+G+GRPPG+MD   ++L+ F     + +   L E  + ++LLL +GLT + + FH
Sbjct:    5 WLIVGLGNPGAQYQGNRHNVGQMVLDELAGRVGAGFKSHKARAQVVEGRLGIGGPRVVLAKPMTYMNVSGGPVSALANFYGISPDHVVAVHDEIDIPFNTVKLKIGGGEGGHNGLRDISKAL-ATKDYLRVRVGVGRPPGRMDTADYVLRDFGTAELKELPFLLDEAADAVELLLQEGLTAAQQKFH 190          
BLAST of FC877996 vs. ExPASy Swiss-Prot
Match: PTH_CLOBK (Peptidyl-tRNA hydrolase OS=Clostridium botulinum (strain Okra / Type B1) GN=pth PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 2.851e-26
Identity = 63/188 (33.51%), Postives = 104/188 (55.32%), Query Frame = 1
Query:  334 WLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFHTIQ 897
            +L VGLGN G +YK TRHN+GF+++D  AE   I +N    K ++G+G +G+  ++L KP TYMNLSGES    A +YK+    ++V +DDM +  G                K+++ +   +  F R+R+GIG+P   +    ++L KF+   RE ID  L    +    ++  G+TE+   ++ ++
Sbjct:    2 YLVVGLGNIGKEYKKTRHNIGFDVVDIIAEKYNIEINRQKFKGSYGEGRIGNEKIILLKPSTYMNLSGESVIEAANFYKIDKENIIVIYDDMSIDIGKLRVRGKGSAGGHNGIKNIIQHLNSD-IFPRVRVGIGQPDENV--VNYVLGKFSKDQREIIDKVLAMSAKACISIVEDGVTEAMNKYNGVK 186          
BLAST of FC877996 vs. ExPASy Swiss-Prot
Match: PTH_MOOTA (Peptidyl-tRNA hydrolase OS=Moorella thermoacetica (strain ATCC 39073) GN=pth PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 3.724e-26
Identity = 68/180 (37.78%), Postives = 96/180 (53.33%), Query Frame = 1
Query:  337 LFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESA 876
            + VGLGNPG +Y  TRHN GF ++D  A+  GI+++    +A  GQG VG+  VLL KPQTYMN SG++  PLA +Y +    +LV HDD+ L  G                +S++ +  G     RL+IGIGRPP   +   ++L+ F+    E I   L E     + LL  G  + A
Sbjct:    6 MVVGLGNPGPRYATTRHNAGFMVVDLLADDLGITLDRTREQALTGQGLVGNNRVLLVKPQTYMNNSGQAVAPLARWYGIAPEAILVIHDDLDLAPGRLRLRRGGSSGGHRGLQSIITHL-GTTAVPRLKIGIGRPPLGQNVIDYVLKPFSEGDWELIRPVLLEAARAARFLLEGGSMDEA 184          
BLAST of FC877996 vs. ExPASy Swiss-Prot
Match: PTH_EXIS2 (Peptidyl-tRNA hydrolase OS=Exiguobacterium sibiricum (strain DSM 17290 / JCM 13490 / 255-15) GN=pth PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 3.724e-26
Identity = 63/165 (38.18%), Postives = 89/165 (53.94%), Query Frame = 1
Query:  343 VGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEV 837
            VGLGNPG KY  TRHN+GF  IDA A+  GI +     KA FG G +    V+L KP TYMNLSGE+  PL  +YK+ +  VLV +DD+ LP                  KS++ +  G ++  RL++G+GRPP  +    ++L  F    +  +   L + V +
Sbjct:    5 VGLGNPGAKYTNTRHNIGFLAIDALAKEHGIKLTESKFKAVFGTGMIKGERVVLVKPLTYMNLSGEAVRPLLDFYKIAVEDVLVIYDDLDLPLEKMRLRSKGSAGGHNGVKSLIQHL-GTQDIKRLKLGVGRPPAPIQVIDWVLMPFAKSEQTTLQHVLSDSVNI 168          
BLAST of FC877996 vs. ExPASy Swiss-Prot
Match: PTH_ANASK (Peptidyl-tRNA hydrolase OS=Anaeromyxobacter sp. (strain K) GN=pth PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 3.724e-26
Identity = 67/175 (38.29%), Postives = 96/175 (54.86%), Query Frame = 1
Query:  337 LFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKG 861
            L VGLGNPG++Y  TRHNVGF + D  A+  G S +     A   +  +G   V + KPQTYMN SGE+ G    ++KL L+ ++V HDD+ L                   KSV N   G+ E+AR+R+G+GRPP +MDP  ++L KF       +D  +++ VE  +L +  G
Sbjct:    3 LVVGLGNPGEEYARTRHNVGFVVADRLAQLAGASFSAKKFAAELAEARLGPERVWIMKPQTYMNHSGEAVGAALRFWKLGLDDLVVVHDDLELDPYRVQLKVGGGHGGHNGVKSV-NAHVGSPEYARVRVGVGRPPPRMDPADYVLGKFAKGEDAELDLCVEQAVEATRLAVELG 176          
The following BLAST results are available for this feature:
BLAST of FC877996 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
PTH_BACLD1.280e-2636.96Peptidyl-tRNA hydrolase OS=Bacillus licheniformis ... [more]
PTH_RHOE42.183e-2634.41Peptidyl-tRNA hydrolase OS=Rhodococcus erythropoli... [more]
PTH_DESRM2.183e-2638.62Peptidyl-tRNA hydrolase OS=Desulfotomaculum reduce... [more]
PTH_CLOK52.183e-2635.14Peptidyl-tRNA hydrolase OS=Clostridium kluyveri (s... [more]
PTH_CLOK12.183e-2635.14Peptidyl-tRNA hydrolase OS=Clostridium kluyveri (s... [more]
PTH_ARTCA2.183e-2633.16Peptidyl-tRNA hydrolase OS=Arthrobacter chlorophen... [more]
PTH_CLOBK2.851e-2633.51Peptidyl-tRNA hydrolase OS=Clostridium botulinum (... [more]
PTH_MOOTA3.724e-2637.78Peptidyl-tRNA hydrolase OS=Moorella thermoacetica ... [more]
PTH_EXIS23.724e-2638.18Peptidyl-tRNA hydrolase OS=Exiguobacterium sibiric... [more]
PTH_ANASK3.724e-2638.29Peptidyl-tRNA hydrolase OS=Anaeromyxobacter sp. (s... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA18DF10RM1 IVIA1 Citrus clementina cDNA clone IC0AAA18DF10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877996 ID=FC877996; Name=FC877996; organism=Citrus clementina; type=EST; length=905bp
CCTAATCTTAGTGAAAGAGAGAACGACACATTCACTCACACACGTCCTCT
CTGCAGCCACAGCCGCCGCTTACAAACGCCCCTCTAACCCTAAGCTGACA
AACGCCCACGCCCACGCCCACGCTGCCGGCGCTGTCACTTTGGTTCAAGT
GTGCCGACGCTGCAGCTTCTAGCCGTTCTCGATTTGCTTCCTCGTTCCAG
CTGCTGCGCTGCCTCCGGCTTCGTTCGCCGTCGTCAGCCGCACAAGTGAA
GTGGAAGGAAACTGAGAACATTTGAGGAGATGCTTATTAACAGGTTTCTG
AGGCGTGGTTTCTGCACTGCTGTTGCTCGGCCATGGCTTTTTGTGGGGTT
GGGTAACCCGGGAGATAAATACAAAGGAACTAGACACAATGTGGGGTTTG
AGATGATCGACGCATTTGCTGAATCACAAGGGATTTCTATGAACACGGTT
CATTGCAAAGCTACTTTCGGACAAGGTTTTGTTGGTGATGCCCCTGTACT
CCTTGCAAAGCCACAGACTTACATGAATCTGAGCGGTGAATCTACTGGAC
CACTTGCAGCTTATTATAAGTTACCTCTTAATCGTGTTCTTGTGTTTCAT
GATGACATGGGCTTACCTTGTGGAGTGCTTCGTCTGCGCCACAATGGAGG
TCATGGAGGCCACAATGGGCTGAAGAGTGTGATGAACAACTTTCGAGGTA
ACCGAGAATTTGCTCGGCTAAGAATTGGTATTGGGAGGCCTCCTGGTCAA
ATGGATCCTAAAGCTTTCTTGCTGCAGAAGTTTAATGCAATAGCTCGAGA
GCGAATTGATACTGCTTTGCAAGAAGGGGTTGAGGTTCTGAAGCTGCTTT
TATCTAAAGGCTTGACAGAAAGTGCTAGACATTTTCACACCATACAAAAA
TACAA
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