FC877996

Overview
NameFC877996
Unique NameFC877996
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length905
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC877996 vs. ExPASy Swiss-Prot
Match: PTH_CLOB8 (Peptidyl-tRNA hydrolase OS=Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052) GN=pth PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 4.117e-25
Identity = 63/174 (36.21%), Postives = 98/174 (56.32%), Query Frame = 1
Query:  334 WLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKF----NAIARERIDTALQEGVEVLK 843
            +L VGLGNPG++Y+ TRHN+GF++ID  A+   I +N    K  +G+GF+    V+L KP TYMNLSGES   +  +Y L  + +LV +DD+ L  G                KS++ +   +  F+R+++G+G+P G  D    +L KF     AI  E I+ + +   E++K
Sbjct:    2 FLIVGLGNPGNEYENTRHNIGFKVIDNIAKEYNIEINRQKFKGMYGEGFINGKKVMLLKPTTYMNLSGESVREVVDFYNLNNDEILVIYDDISLEVGKLRIREKGSAGGHNGIKSIIAHL-NSEIFSRIKVGVGQPNG--DLVKHVLGKFTKEETAILSESIEASTKAAAEIIK 172          
BLAST of FC877996 vs. ExPASy Swiss-Prot
Match: PTH_KINRD (Peptidyl-tRNA hydrolase OS=Kineococcus radiotolerans (strain ATCC BAA-149 / DSM 14245 / SRS30216) GN=pth PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 5.377e-25
Identity = 62/192 (32.29%), Postives = 105/192 (54.69%), Query Frame = 1
Query:  334 WLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAP-------VLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFH 888
            WL VGLGNPG +Y+ TRHNVG  ++D  A     S       A   +  +G AP       V+LA P +YMN+SG     LA Y+ + +  ++V HD++ +P G                +S+  +  G++++AR+R+GIGRPPG+ DP  F+L++F++  ++ +   + +  + ++ L+ KG   + + FH
Sbjct:    5 WLVVGLGNPGAEYERTRHNVGQMVLDELASRTRGSFKRHRTGARTAEVRLGVAPGGAPGPRVVLAAPTSYMNVSGGPVAGLAKYFDVDVEHLVVVHDELDVPFGSVRLKRGGGEGGHNGLRSISKSL-GDKDYARVRVGIGRPPGRQDPADFVLKEFSSTEKKDMPFLVMDAADAVEELVIKGFEAAQQKFH 195          
BLAST of FC877996 vs. ExPASy Swiss-Prot
Match: PTH_CLOBB (Peptidyl-tRNA hydrolase OS=Clostridium botulinum (strain Eklund 17B / Type B) GN=pth PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 7.023e-25
Identity = 61/174 (35.06%), Postives = 96/174 (55.17%), Query Frame = 1
Query:  334 WLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFN----AIARERIDTALQEGVEVLK 843
            +L VGLGNPG KY  TRHN+GFE+ID  +    I +N    +  +G+GF+ +  V+L KP TYMNLSG+S   +A +YK+    ++V +DD+ L  G                KS++ N      F R+++G+G+P   +D   ++L KF+     + +E I+ A     E++K
Sbjct:    2 FLIVGLGNPGSKYDNTRHNIGFEVIDNISNEYNIDINRQKFRGVYGEGFIANNKVILLKPTTYMNLSGDSVREVANFYKISNENIIVIYDDISLDIGRLRIREKGSAGGHNGIKSIIANL-STDVFPRIKVGVGQP--NIDLVNYVLGKFSKEEKEVLKESIEVATNSVEEIIK 172          
BLAST of FC877996 vs. ExPASy Swiss-Prot
Match: PTH_BACA2 (Peptidyl-tRNA hydrolase OS=Bacillus amyloliquefaciens (strain FZB42) GN=pth PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 7.023e-25
Identity = 67/184 (36.41%), Postives = 90/184 (48.91%), Query Frame = 1
Query:  337 LFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFH 888
            +  GLGNPG  Y+ TRHNVGF  ID  ++   I +N       +G GFV    VLL KP TYMNLSGE   P+  YY      + V +DD+ LP G                KS++ +  G  EF R+RIGIGRP   M    ++L  F       I+ A+ + V+  +  L+K   E    F+
Sbjct:    3 VIAGLGNPGKTYENTRHNVGFMAIDELSKEWNIELNKTKFNGLYGMGFVSGKKVLLVKPLTYMNLSGECLRPILDYYDADHEDLKVIYDDLDLPTGKIRLRTKGSAGGHNGIKSLIQHL-GTPEFDRVRIGIGRPVNGMKVVDYVLGAFTKEEAPHINDAVSKTVKACEASLTKPFLEVMNEFN 185          
BLAST of FC877996 vs. ExPASy Swiss-Prot
Match: PTH_THETN (Peptidyl-tRNA hydrolase OS=Thermoanaerobacter tengcongensis GN=pth PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 9.172e-25
Identity = 63/185 (34.05%), Postives = 101/185 (54.59%), Query Frame = 1
Query:  334 WLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFH 888
            ++  GLGNPG +Y+GTRHNVGF +IDA ++  GI ++ +  K+  G+G      V+L KPQT+MNLSGE+      +YK+PL  V+V +DD  L  G                 S++     + +F R+RIGIG+P    D    +L +F+   ++ ID A++   E +  ++  G+  +   F+
Sbjct:    2 YIIAGLGNPGKEYEGTRHNVGFMVIDALSKKLGIEVSRLKFKSLMGEGHFKGEKVILLKPQTFMNLSGEALYDAVNFYKIPLENVIVVYDDKDLEVGKIRIRRKGSSGGHNGMNSII-YLLNSEDFPRVRIGIGKPE-DGDLVRHVLGRFSDEEKKVIDEAVERAAEAVIDIMENGIEHAMSRFN 184          
BLAST of FC877996 vs. ExPASy Swiss-Prot
Match: PTH_SYNJB (Peptidyl-tRNA hydrolase OS=Synechococcus sp. GN=pth PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 9.172e-25
Identity = 66/187 (35.29%), Postives = 97/187 (51.87%), Query Frame = 1
Query:  337 LFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTV-HCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFHTI 894
            L VGLGNPG +Y  TRHN GF ++D  A+  GI +      + ++G+GF       L KP+TYMN SG+S   +  +YKL L  VLV +DDM LP G                KS++ +  G+  F RLR+G+G+P G  D    +L  F    +E ++  L   VE ++    +GL  +   F+ +
Sbjct:   16 LVVGLGNPGPQYANTRHNCGFMVVDRLAQRWGIPLVLEKRFQGSYGEGFALGGKRRLLKPETYMNRSGQSVRAVLDWYKLDLASVLVVYDDMDLPLGRLRLRGSGSAGGHNGMKSIIQHL-GSEAFPRLRLGVGKPKGSQDVVGHVLGGFAPAEQEVLERVLDVAVEAVECCWQEGLRTAMNRFNPL 201          
BLAST of FC877996 vs. ExPASy Swiss-Prot
Match: PTH_MYCA9 (Peptidyl-tRNA hydrolase OS=Mycobacterium abscessus (strain ATCC 19977 / DSM 44196) GN=pth PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 9.172e-25
Identity = 63/186 (33.87%), Postives = 96/186 (51.61%), Query Frame = 1
Query:  337 LFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFV--GDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFH 888
            L VGLGNPG  Y  TRHN+GF + D  A   G +    H K+      +  G   V LAKP+T+MN SG     LA ++ +P   V+V HD++ L  G                +SV  +  G +++ R+R+G+GRPPG+ DP AF+L+ F     +++    ++G +  +LL+  GL  +    H
Sbjct:   10 LVVGLGNPGPNYAKTRHNLGFMVADLLAAKDGATFKP-HKKSGAEATTIRLGGRAVNLAKPRTFMNTSGPQVAALAKFFSVPPANVIVMHDELDLDFGTVRLKLGGGEGGHNGLRSVSQSL-GTKDYLRVRLGVGRPPGRKDPAAFVLENFAKAETDQVPLLCEQGADAAELLIRLGLEAAQNQVH 193          
BLAST of FC877996 vs. ExPASy Swiss-Prot
Match: PTH_MANSM (Peptidyl-tRNA hydrolase OS=Mannheimia succiniciproducens (strain MBEL55E) GN=pth PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 9.172e-25
Identity = 65/188 (34.57%), Postives = 95/188 (50.53%), Query Frame = 1
Query:  337 LFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATF----GQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFH 888
            L VGLGNPGDKY  TRHN G  +++  A     ++     +A F     +  +G   V    P T+MNLSG++ G LA +Y++    +LV HD++ LP GV               K  +     N+ F RLRIGIG P  +    A++L K + I R  ID AL E    +++LL  G+T++    +
Sbjct:    6 LIVGLGNPGDKYADTRHNAGEWLVERLARRFNFNLKD---EAKFFGKTARAVIGGEEVRFLIPTTFMNLSGKAVGALATFYRIKPEEILVIHDELDLPPGVAKIKQGGGHGGHNGLKDTIAQLANNKNFYRLRIGIGHPGDKNLVSAYVLSKPSPIDRSAIDKALDEAASCMEILLKDGITKATNRLN 190          
BLAST of FC877996 vs. ExPASy Swiss-Prot
Match: PTH_CLOBA (Peptidyl-tRNA hydrolase OS=Clostridium botulinum (strain Alaska E43 / Type E3) GN=pth PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 9.172e-25
Identity = 58/185 (31.35%), Postives = 100/185 (54.05%), Query Frame = 1
Query:  334 WLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFH 888
            +L VGLGNPG KY  TRHN+GFE+ID  +    I +N    K  +G+GF+ +  V+L KP TYMNLSG+S   +A +YK+    ++V +DD+ L  G                KS++ N      F R+++G+G+P   +    ++L KF+   +E +  +++     ++ ++ + +  +   F+
Sbjct:    2 FLIVGLGNPGSKYDNTRHNIGFEVIDNISNEYNIDINRQKFKGVYGEGFIANNKVILLKPTTYMNLSGDSVREVANFYKISNENIIVIYDDISLDIGRLRIREKGSAGGHNGIKSIIANL-STDVFPRIKVGVGQPNDNL--VDYVLGKFSKEEKEVLKESIEAATNSVEEIIKQDINSAMNKFN 183          
BLAST of FC877996 vs. ExPASy Swiss-Prot
Match: PTH_EUBR3 (Peptidyl-tRNA hydrolase OS=Eubacterium rectale (strain ATCC 33656 / VPI 0990) GN=pth PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 1.198e-24
Identity = 65/186 (34.95%), Postives = 103/186 (55.38%), Query Frame = 1
Query:  334 WLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKL-PLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFH 888
            ++ VGLGNP  KY+ TRHN+GF++IDA A+   IS+     KA  G G +    VLL KPQTYMNLSGES   +  +YKL P   ++V  DD+ L  G                KS++    G + F+R+++G+G  P   D    +L +F++  R +++ A+   ++   +L+ +G T+ A + +
Sbjct:    2 YVIVGLGNPDKKYEHTRHNIGFDVIDALADKYNISVTDKKHKALCGSGVIEGMKVLLVKPQTYMNLSGESVAEVMNFYKLDPDEEMIVIFDDISLEPGRIRIRKKGSAGGHNGIKSII-AMTGTQGFSRIKVGVGEKPQGWDLADHVLGRFSSEDRAKVEEAIGHAMDA-AVLMMQGETDKAMNIY 185          
The following BLAST results are available for this feature:
BLAST of FC877996 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
PTH_CLOB84.117e-2536.21Peptidyl-tRNA hydrolase OS=Clostridium beijerincki... [more]
PTH_KINRD5.377e-2532.29Peptidyl-tRNA hydrolase OS=Kineococcus radiotolera... [more]
PTH_CLOBB7.023e-2535.06Peptidyl-tRNA hydrolase OS=Clostridium botulinum (... [more]
PTH_BACA27.023e-2536.41Peptidyl-tRNA hydrolase OS=Bacillus amyloliquefaci... [more]
PTH_THETN9.172e-2534.05Peptidyl-tRNA hydrolase OS=Thermoanaerobacter teng... [more]
PTH_SYNJB9.172e-2535.29Peptidyl-tRNA hydrolase OS=Synechococcus sp. GN=pt... [more]
PTH_MYCA99.172e-2533.87Peptidyl-tRNA hydrolase OS=Mycobacterium abscessus... [more]
PTH_MANSM9.172e-2534.57Peptidyl-tRNA hydrolase OS=Mannheimia succinicipro... [more]
PTH_CLOBA9.172e-2531.35Peptidyl-tRNA hydrolase OS=Clostridium botulinum (... [more]
PTH_EUBR31.198e-2434.95Peptidyl-tRNA hydrolase OS=Eubacterium rectale (st... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA18DF10RM1 IVIA1 Citrus clementina cDNA clone IC0AAA18DF10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877996 ID=FC877996; Name=FC877996; organism=Citrus clementina; type=EST; length=905bp
CCTAATCTTAGTGAAAGAGAGAACGACACATTCACTCACACACGTCCTCT
CTGCAGCCACAGCCGCCGCTTACAAACGCCCCTCTAACCCTAAGCTGACA
AACGCCCACGCCCACGCCCACGCTGCCGGCGCTGTCACTTTGGTTCAAGT
GTGCCGACGCTGCAGCTTCTAGCCGTTCTCGATTTGCTTCCTCGTTCCAG
CTGCTGCGCTGCCTCCGGCTTCGTTCGCCGTCGTCAGCCGCACAAGTGAA
GTGGAAGGAAACTGAGAACATTTGAGGAGATGCTTATTAACAGGTTTCTG
AGGCGTGGTTTCTGCACTGCTGTTGCTCGGCCATGGCTTTTTGTGGGGTT
GGGTAACCCGGGAGATAAATACAAAGGAACTAGACACAATGTGGGGTTTG
AGATGATCGACGCATTTGCTGAATCACAAGGGATTTCTATGAACACGGTT
CATTGCAAAGCTACTTTCGGACAAGGTTTTGTTGGTGATGCCCCTGTACT
CCTTGCAAAGCCACAGACTTACATGAATCTGAGCGGTGAATCTACTGGAC
CACTTGCAGCTTATTATAAGTTACCTCTTAATCGTGTTCTTGTGTTTCAT
GATGACATGGGCTTACCTTGTGGAGTGCTTCGTCTGCGCCACAATGGAGG
TCATGGAGGCCACAATGGGCTGAAGAGTGTGATGAACAACTTTCGAGGTA
ACCGAGAATTTGCTCGGCTAAGAATTGGTATTGGGAGGCCTCCTGGTCAA
ATGGATCCTAAAGCTTTCTTGCTGCAGAAGTTTAATGCAATAGCTCGAGA
GCGAATTGATACTGCTTTGCAAGAAGGGGTTGAGGTTCTGAAGCTGCTTT
TATCTAAAGGCTTGACAGAAAGTGCTAGACATTTTCACACCATACAAAAA
TACAA
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