FC878003

Overview
NameFC878003
Unique NameFC878003
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length849
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC878003 vs. ExPASy Swiss-Prot
Match: PCF2_ORYSJ (Transcription factor PCF2 OS=Oryza sativa subsp. japonica GN=PCF2 PE=1 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 5.167e-19
Identity = 44/57 (77.19%), Postives = 51/57 (89.47%), Query Frame = 3
Query:  261 LAKKP---SKDRHTKVDGRGRRIRMPAVCAARVFQLTRELGHKSDGETIEWLLQQAE 422
            + +KP   ++DRHTKV+GRGRRIRMPA CAAR+FQLTRELGHKSDGETI WLLQQ+E
Sbjct:   67 MVRKPPPRNRDRHTKVEGRGRRIRMPAACAARIFQLTRELGHKSDGETIRWLLQQSE 123          
BLAST of FC878003 vs. ExPASy Swiss-Prot
Match: PCF2_ORYSI (Transcription factor PCF2 OS=Oryza sativa subsp. indica GN=PCF2 PE=4 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 5.167e-19
Identity = 44/57 (77.19%), Postives = 51/57 (89.47%), Query Frame = 3
Query:  261 LAKKP---SKDRHTKVDGRGRRIRMPAVCAARVFQLTRELGHKSDGETIEWLLQQAE 422
            + +KP   ++DRHTKV+GRGRRIRMPA CAAR+FQLTRELGHKSDGETI WLLQQ+E
Sbjct:   67 MVRKPPPRNRDRHTKVEGRGRRIRMPAACAARIFQLTRELGHKSDGETIRWLLQQSE 123          
BLAST of FC878003 vs. ExPASy Swiss-Prot
Match: TCP9_ARATH (Transcription factor TCP9 OS=Arabidopsis thaliana GN=TCP9 PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 6.748e-19
Identity = 43/54 (79.63%), Postives = 48/54 (88.89%), Query Frame = 3
Query:  261 LAKKPSKDRHTKVDGRGRRIRMPAVCAARVFQLTRELGHKSDGETIEWLLQQAE 422
            L +  +KDRHTKV+GRGRRIRMPA CAAR+FQLTRELGHKSDGETI WLL+ AE
Sbjct:   70 LKRASTKDRHTKVEGRGRRIRMPATCAARIFQLTRELGHKSDGETIRWLLENAE 123          
BLAST of FC878003 vs. ExPASy Swiss-Prot
Match: TCP6_ARATH (Transcription factor TCP6 OS=Arabidopsis thaliana GN=TCP6 PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 6.748e-19
Identity = 40/52 (76.92%), Postives = 49/52 (94.23%), Query Frame = 3
Query:  267 KKPSKDRHTKVDGRGRRIRMPAVCAARVFQLTRELGHKSDGETIEWLLQQAE 422
            KKP+KDRH KV+GRGRR+R+P +CAAR++QLT+ELGHKSDGET+EWLLQ AE
Sbjct:   65 KKPNKDRHLKVEGRGRRVRLPPLCAARIYQLTKELGHKSDGETLEWLLQHAE 116          
BLAST of FC878003 vs. ExPASy Swiss-Prot
Match: PCF1_ORYSJ (Transcription factor PCF1 OS=Oryza sativa subsp. japonica GN=PCF1 PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 3.135e-16
Identity = 39/49 (79.59%), Postives = 46/49 (93.88%), Query Frame = 3
Query:  276 SKDRHTKVDGRGRRIRMPAVCAARVFQLTRELGHKSDGETIEWLLQQAE 422
            S DRH+KV GRGRR+R+PA+ AARVFQLTRELGH++DGETIEWLL+QAE
Sbjct:   56 SSDRHSKVAGRGRRVRIPAMVAARVFQLTRELGHRTDGETIEWLLRQAE 104          
BLAST of FC878003 vs. ExPASy Swiss-Prot
Match: TCP11_ARATH (Transcription factor TCP11 OS=Arabidopsis thaliana GN=TCP11 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 4.094e-16
Identity = 38/49 (77.55%), Postives = 45/49 (91.84%), Query Frame = 3
Query:  276 SKDRHTKVDGRGRRIRMPAVCAARVFQLTRELGHKSDGETIEWLLQQAE 422
            +KDRHTKV+GR RR+ MPA+ AAR+FQLTRELGHK++GETIEWLL QAE
Sbjct:   43 TKDRHTKVNGRSRRVTMPALAAARIFQLTRELGHKTEGETIEWLLSQAE 91          
BLAST of FC878003 vs. ExPASy Swiss-Prot
Match: TCP16_ARATH (Transcription factor TCP16 OS=Arabidopsis thaliana GN=TCP16 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.780e-11
Identity = 31/53 (58.49%), Postives = 41/53 (77.36%), Query Frame = 3
Query:  264 AKKPSKDRHTKVDGRGRRIRMPAVCAARVFQLTRELGHKSDGETIEWLLQQAE 422
            A++  KDRH K+ GR RRIR+P   A ++F+LT+ELG K+DGET+ WLLQ AE
Sbjct:   13 ARRTPKDRHLKIGGRDRRIRIPPSVAPQLFRLTKELGFKTDGETVSWLLQNAE 65          
The following BLAST results are available for this feature:
BLAST of FC878003 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
PCF2_ORYSJ5.167e-1977.19Transcription factor PCF2 OS=Oryza sativa subsp. j... [more]
PCF2_ORYSI5.167e-1977.19Transcription factor PCF2 OS=Oryza sativa subsp. i... [more]
TCP9_ARATH6.748e-1979.63Transcription factor TCP9 OS=Arabidopsis thaliana ... [more]
TCP6_ARATH6.748e-1976.92Transcription factor TCP6 OS=Arabidopsis thaliana ... [more]
PCF1_ORYSJ3.135e-1679.59Transcription factor PCF1 OS=Oryza sativa subsp. j... [more]
TCP11_ARATH4.094e-1677.55Transcription factor TCP11 OS=Arabidopsis thaliana... [more]
TCP16_ARATH1.780e-1158.49Transcription factor TCP16 OS=Arabidopsis thaliana... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAQ12YE03RM1 IVIA1 Citrus clementina cDNA clone KN0AAQ12YE03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878003 ID=FC878003; Name=FC878003; organism=Citrus clementina; type=EST; length=849bp
CTCACCTACTCTTCTTTCTCCTCTCTCACACACCAGTCAAACAAACAAAC
CTCAAAACCATCATTTTTTGTTTGCCAAGAAACTGATCAAAGAAAATTTA
TATATGATCCTTCGCATCTGGGAAAATTGAATAAGCAAAACCCCAGATGA
AAATAATGGAACACAACAACAACAACAACCAAACCACAGCGTCATCAAAT
AATTCAAACCCTAATACAACAACAACGACAACAAGTACAGTTTCAGCAGC
TACCAAAACCCTAGCCAAGAAGCCGTCAAAGGACCGGCACACCAAAGTGG
ACGGCCGGGGGCGACGGATACGGATGCCGGCAGTATGTGCAGCTAGGGTT
TTTCAGTTAACAAGAGAATTAGGGCACAAATCAGATGGTGAAACCATTGA
GTGGCTGCTGCAACAAGCTGAGCCTGCCATTATAGCTACCACGGGCACCG
GCACCATTCCTGCTAATTTTTCAACTCTTAATATCTCTTTACGTAGCAGT
GGCAGCTCCTCTCTTTCAGCGCCCGCTTCTAAATCATCACTCCACAGCGC
CGCCGCTGCTTTGGCACTTTACAACAACACCACCAACAACAACATTAATA
GTGGAGGTTTTTTTTGTGGGGCGTTTCAGCAGCAGCAGCAGCAACAATTG
TTGTATAATATTCATGAAACAGCGGCAGCAACAGCAAGTGCTTGTGCTTC
TTCATCTTCTTCTTCTTCTTCTGCTTCAGCAGCTGCTGCCGTGGCGGCAC
CTGCAGCTGCTATGTGGGCAGTGGCACCGGCTGCTGCTTCTAATGGGGGC
AACGGCTTCTGGATGCTACCGGAGGCACAGATGTGGACTTTTCCCGCTC
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