FC878003
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC878003 vs. ExPASy Swiss-Prot
Match: PCF2_ORYSJ (Transcription factor PCF2 OS=Oryza sativa subsp. japonica GN=PCF2 PE=1 SV=1) HSP 1 Score: 95.1301 bits (235), Expect = 5.167e-19 Identity = 44/57 (77.19%), Postives = 51/57 (89.47%), Query Frame = 3 Query: 261 LAKKP---SKDRHTKVDGRGRRIRMPAVCAARVFQLTRELGHKSDGETIEWLLQQAE 422 + +KP ++DRHTKV+GRGRRIRMPA CAAR+FQLTRELGHKSDGETI WLLQQ+E Sbjct: 67 MVRKPPPRNRDRHTKVEGRGRRIRMPAACAARIFQLTRELGHKSDGETIRWLLQQSE 123
BLAST of FC878003 vs. ExPASy Swiss-Prot
Match: PCF2_ORYSI (Transcription factor PCF2 OS=Oryza sativa subsp. indica GN=PCF2 PE=4 SV=1) HSP 1 Score: 95.1301 bits (235), Expect = 5.167e-19 Identity = 44/57 (77.19%), Postives = 51/57 (89.47%), Query Frame = 3 Query: 261 LAKKP---SKDRHTKVDGRGRRIRMPAVCAARVFQLTRELGHKSDGETIEWLLQQAE 422 + +KP ++DRHTKV+GRGRRIRMPA CAAR+FQLTRELGHKSDGETI WLLQQ+E Sbjct: 67 MVRKPPPRNRDRHTKVEGRGRRIRMPAACAARIFQLTRELGHKSDGETIRWLLQQSE 123
BLAST of FC878003 vs. ExPASy Swiss-Prot
Match: TCP9_ARATH (Transcription factor TCP9 OS=Arabidopsis thaliana GN=TCP9 PE=2 SV=1) HSP 1 Score: 94.7449 bits (234), Expect = 6.748e-19 Identity = 43/54 (79.63%), Postives = 48/54 (88.89%), Query Frame = 3 Query: 261 LAKKPSKDRHTKVDGRGRRIRMPAVCAARVFQLTRELGHKSDGETIEWLLQQAE 422 L + +KDRHTKV+GRGRRIRMPA CAAR+FQLTRELGHKSDGETI WLL+ AE Sbjct: 70 LKRASTKDRHTKVEGRGRRIRMPATCAARIFQLTRELGHKSDGETIRWLLENAE 123
BLAST of FC878003 vs. ExPASy Swiss-Prot
Match: TCP6_ARATH (Transcription factor TCP6 OS=Arabidopsis thaliana GN=TCP6 PE=2 SV=1) HSP 1 Score: 94.7449 bits (234), Expect = 6.748e-19 Identity = 40/52 (76.92%), Postives = 49/52 (94.23%), Query Frame = 3 Query: 267 KKPSKDRHTKVDGRGRRIRMPAVCAARVFQLTRELGHKSDGETIEWLLQQAE 422 KKP+KDRH KV+GRGRR+R+P +CAAR++QLT+ELGHKSDGET+EWLLQ AE Sbjct: 65 KKPNKDRHLKVEGRGRRVRLPPLCAARIYQLTKELGHKSDGETLEWLLQHAE 116
BLAST of FC878003 vs. ExPASy Swiss-Prot
Match: PCF1_ORYSJ (Transcription factor PCF1 OS=Oryza sativa subsp. japonica GN=PCF1 PE=1 SV=1) HSP 1 Score: 85.8853 bits (211), Expect = 3.135e-16 Identity = 39/49 (79.59%), Postives = 46/49 (93.88%), Query Frame = 3 Query: 276 SKDRHTKVDGRGRRIRMPAVCAARVFQLTRELGHKSDGETIEWLLQQAE 422 S DRH+KV GRGRR+R+PA+ AARVFQLTRELGH++DGETIEWLL+QAE Sbjct: 56 SSDRHSKVAGRGRRVRIPAMVAARVFQLTRELGHRTDGETIEWLLRQAE 104
BLAST of FC878003 vs. ExPASy Swiss-Prot
Match: TCP11_ARATH (Transcription factor TCP11 OS=Arabidopsis thaliana GN=TCP11 PE=2 SV=1) HSP 1 Score: 85.5001 bits (210), Expect = 4.094e-16 Identity = 38/49 (77.55%), Postives = 45/49 (91.84%), Query Frame = 3 Query: 276 SKDRHTKVDGRGRRIRMPAVCAARVFQLTRELGHKSDGETIEWLLQQAE 422 +KDRHTKV+GR RR+ MPA+ AAR+FQLTRELGHK++GETIEWLL QAE Sbjct: 43 TKDRHTKVNGRSRRVTMPALAAARIFQLTRELGHKTEGETIEWLLSQAE 91
BLAST of FC878003 vs. ExPASy Swiss-Prot
Match: TCP16_ARATH (Transcription factor TCP16 OS=Arabidopsis thaliana GN=TCP16 PE=2 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 1.780e-11 Identity = 31/53 (58.49%), Postives = 41/53 (77.36%), Query Frame = 3 Query: 264 AKKPSKDRHTKVDGRGRRIRMPAVCAARVFQLTRELGHKSDGETIEWLLQQAE 422 A++ KDRH K+ GR RRIR+P A ++F+LT+ELG K+DGET+ WLLQ AE Sbjct: 13 ARRTPKDRHLKIGGRDRRIRIPPSVAPQLFRLTKELGFKTDGETVSWLLQNAE 65 The following BLAST results are available for this feature:
BLAST of FC878003 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 17
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >FC878003 ID=FC878003; Name=FC878003; organism=Citrus clementina; type=EST; length=849bpback to top |