FC878040

Overview
NameFC878040
Unique NameFC878040
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length865
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC878040 vs. ExPASy Swiss-Prot
Match: ASK14_ARATH (SKP1-like protein 14 OS=Arabidopsis thaliana GN=ASK14 PE=1 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 5.354e-19
Identity = 56/112 (50.00%), Postives = 68/112 (60.71%), Query Frame = 2
Query:   38 MSSPKMIVLKSCDGESFEVEEAVALESTTIKHMIEDDCADNGIPLPNVTGKILAKVVEYCKKHVEVPATQDXXXXXXXXXXXXXXXXEEDLKSWDTDFV-KVDQATLFDLIL 370
            MSS K IVL S DGESFEVEEAVA +   ++HMIEDDC    +PL NVTGKIL+ VVEYCKKHV                        ++ K+WD +F+ K DQ T+F L+L
Sbjct:    1 MSSNK-IVLSSSDGESFEVEEAVARKLKIVEHMIEDDCVVTEVPLQNVTGKILSIVVEYCKKHV-------------------VDEESDEFKTWDEEFMKKFDQPTVFQLLL 92          
BLAST of FC878040 vs. ExPASy Swiss-Prot
Match: ASK19_ARATH (SKP1-like protein 19 OS=Arabidopsis thaliana GN=ASK19 PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 6.992e-19
Identity = 57/132 (43.18%), Postives = 68/132 (51.52%), Query Frame = 2
Query:   44 SPKMIVLKSCDGESFEVEEAVALESTTIKHMIEDDCADNGIPLPNVTGKILAKVVEYCKKHVE----------------------VPATQDXXXXXXXXXXXXXXXXEEDLKSWDTDFVK-VDQATLFDLIL 370
            S K IVL S DGESF+VEE VA +   + H+IEDDCA N IP+PNVTG+ILAKV+EYCKKHVE                           D                +E L  WD  F+K  D  T+FD+IL
Sbjct:    2 SSKKIVLTSSDGESFKVEEVVARKLQIVGHIIEDDCATNKIPIPNVTGEILAKVIEYCKKHVEDDDDVVETHESSTKGDKTVEEAKKKPDDVAVPESTEGDDEAEDKKEKLNEWDAKFMKDFDIKTIFDIIL 133          
BLAST of FC878040 vs. ExPASy Swiss-Prot
Match: ASK15_ARATH (SKP1-like protein 15 OS=Arabidopsis thaliana GN=ASK15 PE=2 SV=2)

HSP 1 Score: 94.7449 bits (234), Expect = 6.992e-19
Identity = 54/112 (48.21%), Postives = 70/112 (62.50%), Query Frame = 2
Query:   38 MSSPKMIVLKSCDGESFEVEEAVALESTTIKHMIEDDCADNGIPLPNVTGKILAKVVEYCKKHVEVPATQDXXXXXXXXXXXXXXXXEEDLKSWDTDFVK-VDQATLFDLIL 370
            MSS K IVL S DGESF+VEE VA +   +KH++EDDC  N IPL NVTG IL+ V+EYCKKHV+     D                +++L +WD +F+K +D  T+F LIL
Sbjct:    1 MSSNK-IVLTSSDGESFQVEEVVARKLQIVKHLLEDDCVINEIPLQNVTGNILSIVLEYCKKHVD--DVVDDDASEEPKKKKPDDEAKQNLDAWDAEFMKNIDMETIFKLIL 109          
BLAST of FC878040 vs. ExPASy Swiss-Prot
Match: ASK18_ARATH (SKP1-like protein 18 OS=Arabidopsis thaliana GN=ASK18 PE=1 SV=2)

HSP 1 Score: 91.2781 bits (225), Expect = 7.731e-18
Identity = 57/126 (45.24%), Postives = 75/126 (59.52%), Query Frame = 2
Query:   38 MSSPKMIVLKSCDGESFEVEEAVALESTTIKHMIEDDCADNGIPLPNVTGKILAKVVEYCKKHVEVPATQDXXXXXXXXXXXXXXXXEEDLKSWDTDFV-KVDQATLFDLILVGIVYLFA*SKLGF 412
            MSS K I+L S DGESFE++EAVA +   I HM+ED+CA   IPL NVTG IL+K++EY K HV  P+ +D                +++L SWD  F+ K+D  T+F +IL    YL     LGF
Sbjct:    1 MSSNK-ILLTSSDGESFEIDEAVARKFLIIVHMMEDNCAGEAIPLENVTGDILSKIIEYAKMHVNEPSEED-----------EDEEAKKNLDSWDAKFMEKLDLETIFKIILAA-NYLNFEGLLGF 113          
BLAST of FC878040 vs. ExPASy Swiss-Prot
Match: ASK5_ARATH (SKP1-like protein 5 OS=Arabidopsis thaliana GN=ASK5 PE=1 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.319e-17
Identity = 49/106 (46.23%), Postives = 65/106 (61.32%), Query Frame = 2
Query:   56 IVLKSCDGESFEVEEAVALESTTIKHMIEDDCADNGIPLPNVTGKILAKVVEYCKKHVEVPATQDXXXXXXXXXXXXXXXXEEDLKSWDTDFVKVDQAT-LFDLIL 370
            I+LKS DG+SFE++E VA +S  I HM+ED CA + IPL NVT KIL  V++YC+KHV+                      EEDLK WD DF+K  + T LFD+++
Sbjct:    5 IMLKSSDGKSFEIDEDVARKSIAINHMVEDGCATDVIPLRNVTSKILKIVIDYCEKHVK-------------------SKEEEDLKEWDADFMKTIETTILFDVMM 91          
BLAST of FC878040 vs. ExPASy Swiss-Prot
Match: ASK7_ARATH (SKP1-like protein 7 OS=Arabidopsis thaliana GN=ASK7 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.722e-17
Identity = 49/108 (45.37%), Postives = 63/108 (58.33%), Query Frame = 2
Query:   44 SPKMIVLKSCDGESFEVEEAVALESTTIKHMIEDDCADNGIPLPNVTGKILAKVVEYCKKHVEVPATQDXXXXXXXXXXXXXXXXEEDLKSWDTDFVKVDQATLFDLI 367
            S K I+LKS DG+ FE+EE  A +  TI HMIE +C DN IP+ NVT +IL  V+EYC KH  V A                   +EDLK WD +F++ DQ T+F L+
Sbjct:    2 STKKIMLKSSDGKMFEIEEETARQCQTIAHMIEAECTDNVIPVSNVTSEILEMVIEYCNKH-HVDAAN--------------PCSDEDLKKWDKEFMEKDQYTIFHLM 94          
BLAST of FC878040 vs. ExPASy Swiss-Prot
Match: ASK17_ARATH (SKP1-like protein 17 OS=Arabidopsis thaliana GN=ASK17 PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.938e-17
Identity = 49/109 (44.95%), Postives = 63/109 (57.80%), Query Frame = 2
Query:   44 SPKMIVLKSCDGESFEVEEAVALESTTIKHMIEDDCADNGIPLPNVTGKILAKVVEYCKKHVEVPATQDXXXXXXXXXXXXXXXXEEDLKSWDTDFVK-VDQATLFDLI 367
            S K IVL S D E FE++EAVA +   + HMI+DDCAD  I L NVTGKILA ++EYCKKHV+                      + +  +WD +FVK +D  TLF L+
Sbjct:    2 SSKKIVLTSSDDECFEIDEAVARKMQMVAHMIDDDCADKAIRLQNVTGKILAIIIEYCKKHVD------------------DVEAKNEFVTWDAEFVKNIDMDTLFKLL 92          
BLAST of FC878040 vs. ExPASy Swiss-Prot
Match: SKP1A_DICDI (SCF ubiquitin ligase complex protein SKP1a OS=Dictyostelium discoideum GN=fpaA PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 1.045e-14
Identity = 46/107 (42.99%), Postives = 65/107 (60.75%), Query Frame = 2
Query:   53 MIVLKSCDGESFEVEEAVALESTTIKHMIED-DCADNGIPLPNVTGKILAKVVEYCKKHVEVPATQDXXXXXXXXXXXXXXXXEEDLKSWDTDFVKVDQATLFDLIL 370
            ++ L+S D + FE+E+ +A  S TIK+MIED   +D+ IPLPNVT  IL KV++YC+ H + P+ Q                  +D+  +D DF KVDQ TLF+LIL
Sbjct:    3 LVKLESSDEKVFEIEKEIACMSVTIKNMIEDIGESDSPIPLPNVTSTILEKVLDYCRHHHQHPSPQGDDKKDEKRL--------DDIPPYDRDFCKVDQPTLFELIL 101          
BLAST of FC878040 vs. ExPASy Swiss-Prot
Match: SKP1B_DICDI (SCF ubiquitin ligase complex protein SKP1b OS=Dictyostelium discoideum GN=fpaB-1 PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.328e-14
Identity = 46/107 (42.99%), Postives = 64/107 (59.81%), Query Frame = 2
Query:   53 MIVLKSCDGESFEVEEAVALESTTIKHMIED-DCADNGIPLPNVTGKILAKVVEYCKKHVEVPATQDXXXXXXXXXXXXXXXXEEDLKSWDTDFVKVDQATLFDLIL 370
            ++ L+S D + FE+E+ +A  S TIK+MIED   +D  IPLPNVT  IL KV++YC+ H + P+ Q                  +D+  +D DF KVDQ TLF+LIL
Sbjct:    3 LVKLESSDEKVFEIEKEIACMSVTIKNMIEDIGESDAPIPLPNVTSTILEKVLDYCRHHHQHPSPQGDDKKDEKRL--------DDIPPYDRDFCKVDQPTLFELIL 101          
BLAST of FC878040 vs. ExPASy Swiss-Prot
Match: ASK6_ARATH (SKP1-like protein 6 OS=Arabidopsis thaliana GN=ASK6 PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 3.040e-14
Identity = 42/83 (50.60%), Postives = 51/83 (61.45%), Query Frame = 2
Query:  125 IKHMIEDDCADNGIPLPNVTGKILAKVVEYCKKHVEVPATQDXXXXXXXXXXXXXXXXEEDLKSWDTDFV-KVDQATLFDLIL 370
            IK M EDDCADNGIPLPNVT KIL  V+EYCKKHV                       EEDLK WD +F+ K++Q+ LFD+++
Sbjct:    3 IKGMAEDDCADNGIPLPNVTSKILLLVIEYCKKHV-------------------VESKEEDLKKWDAEFMKKMEQSILFDVMM 66          
The following BLAST results are available for this feature:
BLAST of FC878040 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 30
Match NameE-valueIdentityDescription
ASK14_ARATH5.354e-1950.00SKP1-like protein 14 OS=Arabidopsis thaliana GN=AS... [more]
ASK19_ARATH6.992e-1943.18SKP1-like protein 19 OS=Arabidopsis thaliana GN=AS... [more]
ASK15_ARATH6.992e-1948.21SKP1-like protein 15 OS=Arabidopsis thaliana GN=AS... [more]
ASK18_ARATH7.731e-1845.24SKP1-like protein 18 OS=Arabidopsis thaliana GN=AS... [more]
ASK5_ARATH1.319e-1746.23SKP1-like protein 5 OS=Arabidopsis thaliana GN=ASK... [more]
ASK7_ARATH1.722e-1745.37SKP1-like protein 7 OS=Arabidopsis thaliana GN=ASK... [more]
ASK17_ARATH2.938e-1744.95SKP1-like protein 17 OS=Arabidopsis thaliana GN=AS... [more]
SKP1A_DICDI1.045e-1442.99SCF ubiquitin ligase complex protein SKP1a OS=Dict... [more]
SKP1B_DICDI2.328e-1442.99SCF ubiquitin ligase complex protein SKP1b OS=Dict... [more]
ASK6_ARATH3.040e-1450.60SKP1-like protein 6 OS=Arabidopsis thaliana GN=ASK... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA8CB06RM1 IVIA1 Citrus clementina cDNA clone IC0AAA8CB06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878040 ID=FC878040; Name=FC878040; organism=Citrus clementina; type=EST; length=865bp
AGACATAGCTAGATTTGTTTTCTTTCTTCTCGAAACGATGTCGTCTCCTA
AGATGATCGTACTCAAGAGCTGTGACGGCGAGTCGTTCGAGGTCGAGGAG
GCTGTCGCGCTTGAGTCGACGACCATCAAGCACATGATCGAGGACGACTG
CGCCGATAACGGCATCCCGTTACCGAACGTGACGGGCAAGATCCTGGCGA
AGGTGGTTGAGTATTGCAAGAAACACGTGGAGGTTCCTGCGACCCAGGAT
AGCAACAACAGCGGCGCCAACAGCAACGGTACTGCCACTAACGGTGGTGA
GGAGGATCTCAAAAGCTGGGACACTGACTTCGTCAAAGTTGACCAGGCCA
CTCTCTTCGATCTCATCCTGGTCGGTATTGTTTATCTCTTTGCTTGATCA
AAGTTAGGGTTTGAAATCCTAATATGAAAATTTTGGCTTTATCTCTTTTC
ATTCTCTAATACTGATTGCTTTGGGTAATATTGCCAATATTTTTTATGTT
AGGGTTTGTAAGGTATGTTTTTGTTGTGATCTTGCATCTCCTAATTGTTT
GCTCCGTCCGTAATTCTGCAATTATATTTTGTGATTTAGTGAGTTAATTA
GTATTTTACTTGCTCAAAAGCTTACGAATTTATGATGTTTTTCAAATCTG
ATTGCTGATAACAATTGTAGGACTTTGTAGTTAAGTGATATTGTTGTGGG
CACTGTCTTTATGGGTGTGATTCTAGGATCATTTTTATGAAGGAAATTGA
CCGTTCGTTTTGTGCTTGCATGCATGTTGTATTTCATGTATTCACACTCC
ACTTTGTGTTTAAGGTTTCCTGTTTTGTGCGATTGTCTCGTTTTGAAAAT
GCTTGCCGGTGGTAA
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