FC878044

Overview
NameFC878044
Unique NameFC878044
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length961
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of FC878044 vs. ExPASy Swiss-Prot
Match: THRC_BACSL (Threonine synthase OS=Bacillus sp. (strain ULM1) GN=thrC PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 2.157e-27
Identity = 74/189 (39.15%), Postives = 112/189 (59.26%), Query Frame = 1 
Query:  316 LPEIDSDDIVSAFEGNSNLFWAERFGKEFLQMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLKKMNKPVIGVGCASTGDTSAALSAYCASAGVPSIVFLPANKISIAQLVQPIANGAFVLSLDTDFDGCMQLIREVTSELPIYLANSLNSLRLEGQKTAAIEILQQFDWEVPDWVIVPGGNLGNIYAF 882
            LP  +    VS  EGN+ L       K+      L+ K+ G + TGSFKD GM + V++    ++ ++ +I   CASTG+TSA+ +AY A  G+  I+ +P  KI+  +L Q +A GA ++S++ +FD  ++ +R + +E PI L NS+N  R+EGQKTAA EI  Q     PD + +P GN GNI A+
Sbjct:   13 LPVNEKTPDVSLMEGNTPLIPLLNISKQLGVQ--LYGKYEGANPTGSFKDRGMVMAVAKAK--EEGSEAII---CASTGNTSASAAAYAARLGMKCIIVIPEGKIAHGKLAQAVAYGAEIISIEGNFDDALKAVRNIAAEEPITLVNSVNPYRIEGQKTAAFEICDQLQ-NAPDVLAIPVGNAGNITAY 193
The following BLAST results are available for this feature:
BLAST of FC878044 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
THRC_BACSL2.157e-2739.15Threonine synthase OS=Bacillus sp. (strain ULM1) G... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA13DE09RM1 IVIA1 Citrus clementina cDNA clone IC0AAA13DE09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878044 ID=FC878044; Name=FC878044; organism=Citrus clementina; type=EST; length=961bp
CCGAAATACACAAACAGAGGTGGCGGCGGCAGTGGCATCAACATAAGGGA
CGAGGCACGTCGCCGGAATGTTATCTACACCCACAAGTTTTCTGCAAAGT
ACGTGCCATTCAATGCGGGGCCGTCTTGTACTGAGTCGTATTCTCTCGAC
GAGGTCGTGTACAGGTCCCAGTCTGGGGGACTTCTCGACGTGCAGCACGA
CATGGGCGCTTTGAAGCACTACGACGGCTCTTACTGGAAGGCGCTGTTCG
ATTCACGAGTCGGCAAAAGGACGTGGCCGTACGGATCAGGGGTTTGGTCA
AAGAAAGAGTGGGTGCTGCCCGAGATTGATAGTGATGATATCGTGAGCGC
TTTCGAAGGGAACTCGAATCTGTTCTGGGCTGAAAGATTTGGCAAAGAGT
TTTTGCAAATGAATGATTTGTGGGTTAAGCACTGTGGGATTAGTCATACA
GGAAGTTTTAAGGATCTGGGTATGACTGTTTTGGTGAGTCAAGTGAATAG
GTTAAAGAAAATGAACAAACCGGTTATTGGGGTTGGCTGTGCTTCAACTG
GCGATACCTCAGCTGCTCTGTCAGCTTATTGTGCCTCTGCTGGCGTTCCT
TCTATTGTGTTTTTGCCCGCTAATAAGATTTCAATTGCCCAGTTAGTGCA
GCCTATTGCAAATGGTGCTTTTGTTTTGAGTCTTGATACTGATTTTGATG
GCTGCATGCAGTTGATAAGGGAAGTTACTTCTGAGTTGCCTATTTATTTA
GCTAATTCTTTGAATAGTTTGAGGTTAGAGGGACAAAAGACTGCTGCTAT
TGAGATATTGCAGCAGTTTGATTGGGAAGTTCCCGATTGGGTGATAGTTC
CTGGTGGTAATTTGGGAAATATATATGCTTTTTTATAAGGGGTTCAAATG
TGCAAAGAGTTAGGGCTTGTTGATAGGATTCCTCGGCTTGTATGTGCACA
AGCTGCAAATG
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