FC878063

Overview
NameFC878063
Unique NameFC878063
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length676
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC878063 vs. ExPASy Swiss-Prot
Match: PPR21_ARATH (Pentatricopeptide repeat-containing protein At1g08070 OS=Arabidopsis thaliana GN=PCMP-H12 PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.070e-19
Identity = 70/213 (32.86%), Postives = 103/213 (48.36%), Query Frame = 1
Query:  133 SKIIEFYALSPLNE-LAYAHALFRQINAPSTNDFNAILRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHXXXXXXXXXXXXXXV-------------------------------YAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLG 675
            SK+IEF  LSP  E L YA ++F+ I  P+   +N + RG A SS P +A+  Y  M+      ++ T  F LK+CA+  A  E  QIH HVL+               +                               YA  G I +A+K+FDE+ V+D+ SWNA+I+G A+     EA++LFK M    V +P+E T++  ++AC   G
Sbjct:   69 SKLIEFCILSPHFEGLPYAISVFKTIQEPNLLIWNTMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFVLKSCAKSKAFKEGQQIHGHVLKLGCDLDLYVHTSLISMYVQNGRLEDAHKVFDKSPHRDVVSYTALIKGYASRGYIENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNV-RPDESTMVTVVSACAQSG 280          

HSP 2 Score: 85.5001 bits (210), Expect = 2.797e-16
Identity = 57/201 (28.36%), Postives = 97/201 (48.26%), Query Frame = 1
Query:   79 QAHLTTTGQFQSKLCPVRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAILRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHXXXXXXXXXXXXXXV--YAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLG 675
            Q HL            + + +I+ Y  S   EL  A  LF ++       +N ++ G  H +    A+L +++MLR     + +T    L ACA + A+     IH ++ +               +  YAK G+I +A +VF+ +  + ++SWNA+I G A    A  + DLF RM+  G+ +P+++T +G L+AC H G
Sbjct:  287 QVHLWIDDHGFGSNLKIVNALIDLY--SKCGELETACGLFERLPYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIFGFAMHGRADASFDLFSRMRKIGI-QPDDITFVGLLSACSHSG 484          

HSP 3 Score: 85.1149 bits (209), Expect = 3.653e-16
Identity = 51/164 (31.10%), Postives = 81/164 (49.39%), Query Frame = 1
Query:  184 AHALFRQINAPSTNDFNAILRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHXXXXXXXXXXXXXXVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLG 675
            A  LF +I       +NA++ G A +     A+  ++ M++ + R D  T    + ACA+  ++    Q+H  +  H              +Y+K GE+ +A  +F+ +  +D+ SWN LI G    NL  EA+ LF+ M   G   PN+VT+L  L AC HLG
Sbjct:  219 AQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSACAQSGSIELGRQVHLWIDDHGFGSNLKIVNALIDLYSKCGELETACGLFERLPYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGE-TPNDVTMLSILPACAHLG 381          
BLAST of FC878063 vs. ExPASy Swiss-Prot
Match: PP367_ARATH (Pentatricopeptide repeat-containing protein At5g06540 OS=Arabidopsis thaliana GN=PCMP-H88 PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.703e-19
Identity = 58/202 (28.71%), Postives = 94/202 (46.53%), Query Frame = 1
Query:  163 PLNELAYAHALFRQINAPSTNDFNAILRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHXXXXXXXXXXXXXXVYAKVGEIVSAKKVFDEMGVRDIASWNALIA-------------------------------GLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLG 675
            P N L YA+ +F QI  P+   FN ++R  +  ++P+ A  +Y QML+     D +T  F +KA + +  +    Q HS ++R               +YA  G I +A ++F +MG RD+ SW +++A                               G A+ N   +A+DLF+ MK EGV   NE  ++  +++C HLG
Sbjct:   63 PTNLLGYAYGIFSQIQNPNLFVFNLLIRCFSTGAEPSKAFGFYTQMLKSRIWPDNITFPFLIKASSEMECVLVGEQTHSQIVRFGFQNDVYVENSLVHMYANCGFIAAAGRIFGQMGFRDVVSWTSMVAGYCKCGMVENAREMFDEMPHRNLFTWSIMINGYAKNNCFEKAIDLFEFMKREGVV-ANETVMVSVISSCAHLG 263          
BLAST of FC878063 vs. ExPASy Swiss-Prot
Match: PP330_ARATH (Pentatricopeptide repeat-containing protein At4g21065 OS=Arabidopsis thaliana GN=PCMP-H28 PE=2 SV=2)

HSP 1 Score: 95.5153 bits (236), Expect = 2.703e-19
Identity = 54/183 (29.51%), Postives = 92/183 (50.27%), Query Frame = 1
Query:  127 VRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAILRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHXXXXXXXXXXXXXXVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLG 675
            V++ ++  YA     ++A A+ +F ++       +N+++ G A + KP  A+  Y +M     + D  T    L ACA++ AL    ++H ++++               +YA+ G +  AK +FDEM  ++  SW +LI GLA      EA++LFK M+      P E+T +G L AC H G
Sbjct:  158 VQNSLLHLYA--NCGDVASAYKVFDKMPEKDLVAWNSVINGFAENGKPEEALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYMIKVGLTRNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVNGFGKEAIELFKYMESTEGLLPCEITFVGILYACSHCG 338          

HSP 2 Score: 87.4261 bits (215), Expect = 7.361e-17
Identity = 53/169 (31.36%), Postives = 87/169 (51.48%), Query Frame = 1
Query:  175 LAYAHALFRQINAP-STNDFNAILRGLAHSSKPTNAVLWYRQM-LRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHXXXXXXXXXXXXXXVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLG 675
            ++YAH +F +I  P +   +N ++RG A      +A   YR+M + G    D  T  F +KA   +  +     IHS V+R               +YA  G++ SA KVFD+M  +D+ +WN++I G A+     EA+ L+  M  +G+ KP+  T++  L+AC  +G
Sbjct:   69 MSYAHKVFSKIEKPINVFIWNTLIRGYAEIGNSISAFSLYREMRVSGLVEPDTHTYPFLIKAVTTMADVRLGETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVINGFAENGKPEEALALYTEMNSKGI-KPDGFTIVSLLSACAKIG 236          
BLAST of FC878063 vs. ExPASy Swiss-Prot
Match: PP165_ARATH (Pentatricopeptide repeat-containing protein At2g20540 OS=Arabidopsis thaliana GN=PCMP-E78 PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.703e-19
Identity = 63/234 (26.92%), Postives = 113/234 (48.29%), Query Frame = 1
Query:   70 KQLQAHLTTTGQFQSKLCPVRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAILRGLAHSSKPTNAVLWYRQMLRGSHR-SDALTCSFALKACARVLALFETLQIHSHVLRHXXXXXXXXXXXXXXVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQ-GNLAS------------------------------EAVDLFKRMKMEGVFKPNEVTVLGALAACGHLG 675
            K++ A +   G  QS    + +K+++F     + ++ YA  LF Q++ P+   +N+I+R   H+S   + +  Y+Q+LR S    D  T  F  K+CA + + +   Q+H H+ +               +Y K  ++V A KVFDEM  RD+ SWN+L++G A+ G +                                EA+D F+ M++ G+ +P+E++++  L +C  LG
Sbjct:   27 KKINASIIIHGLSQSSF--MVTKMVDF--CDKIEDMDYATRLFNQVSNPNVFLYNSIIRAYTHNSLYCDVIRIYKQLLRKSFELPDRFTFPFMFKSCASLGSCYLGKQVHGHLCKFGPRFHVVTENALIDMYMKFDDLVDAHKVFDEMYERDVISWNSLLSGYARLGQMKKAKGLFHLMLDKTIVSWTAMISGYTGIGCYVEAMDFFREMQLAGI-EPDEISLISVLPSCAQLG 255          

HSP 2 Score: 69.707 bits (169), Expect = 1.588e-11
Identity = 46/170 (27.06%), Postives = 80/170 (47.06%), Query Frame = 1
Query:  166 LNELAYAHALFRQINAPSTNDFNAILRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHXXXXXXXXXXXXXXVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLG 675
            L ++  A  LF  +   +   + A++ G         A+ ++R+M       D ++    L +CA++ +L     IH +  R               +Y+K G I  A ++F +M  +D+ SW+ +I+G A    A  A++ F  M+   V KPN +T LG L+AC H+G
Sbjct:  188 LGQMKKAKGLFHLMLDKTIVSWTAMISGYTGIGCYVEAMDFFREMQLAGIEPDEISLISVLPSCAQLGSLELGKWIHLYAERRGFLKQTGVCNALIEMYSKCGVISQAIQLFGQMEGKDVISWSTMISGYAYHGNAHGAIETFNEMQRAKV-KPNGITFLGLLSACSHVG 356          
BLAST of FC878063 vs. ExPASy Swiss-Prot
Match: PP321_ARATH (Pentatricopeptide repeat-containing protein At4g18840 OS=Arabidopsis thaliana GN=PCMP-E101 PE=2 SV=2)

HSP 1 Score: 95.1301 bits (235), Expect = 3.530e-19
Identity = 60/185 (32.43%), Postives = 91/185 (49.19%), Query Frame = 1
Query:   67 IKQLQAHLTTTGQFQSKLCPVRSKIIEFYALSPLNE-LAYAHALFRQINAPSTNDFNAILRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHXXXXXXXXXXXXXXVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGV 618
            I+Q  A +  TG F        SK++ F A +P  + ++YAH++  +I +P+    N+++R  A+SS P  A+  +R+ML G    D  + +F LKACA      E  QIH   ++               VY + G    A+KV D M VRD  SWN+L++   +  L  EA  LF  M+   V
Sbjct:   55 IQQAHAFMLKTGLFHDTFSA--SKLVAFAATNPEPKTVSYAHSILNRIGSPNGFTHNSVIRAYANSSTPEVALTVFREMLLGPVFPDKYSFTFVLKACAAFCGFEEGRQIHGLFIKSGLVTDVFVENTLVNVYGRSGYFEIARKVLDRMPVRDAVSWNSLLSAYLEKGLVDEARALFDEMEERNV 237          

HSP 2 Score: 82.4185 bits (202), Expect = 2.368e-15
Identity = 48/165 (29.09%), Postives = 83/165 (50.30%), Query Frame = 1
Query:  184 AHALFRQINAPSTNDFNAILRGLAHSSKPTNAVLWYRQMLRGS-HRSDALTCSFALKACARVLALFETLQIHSHVLRHXXXXXXXXXXXXXXVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLG 675
            A  +F  +       +NA++   AH       +  + +ML  S  + D  T    L ACA + +L +   +H ++ +H              +Y+K G+I  A +VF     RD+++WN++I+ L+   L  +A+++F  M  EG FKPN +T +G L+AC H+G
Sbjct:  256 AKEVFDSMPVRDVVSWNAMVTAYAHVGCYNEVLEVFNKMLDDSTEKPDGFTLVSVLSACASLGSLSQGEWVHVYIDKHGIEIEGFLATALVDMYSKCGKIDKALEVFRATSKRDVSTWNSIISDLSVHGLGKDALEIFSEMVYEG-FKPNGITFIGVLSACNHVG 419          
BLAST of FC878063 vs. ExPASy Swiss-Prot
Match: PPR85_ARATH (Pentatricopeptide repeat-containing protein At1g59720, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H51 PE=2 SV=2)

HSP 1 Score: 94.3597 bits (233), Expect = 6.022e-19
Identity = 66/206 (32.04%), Postives = 101/206 (49.03%), Query Frame = 1
Query:   67 IKQLQAH-LTTTGQFQSKLCPVRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAILRGLAHS-SKPTNAVLWYRQML-RGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHXXXXXXXXXXXXXXVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLG 675
            +KQL A  L TT   +     +  KI++    S  +++ YA  +F  I   S+  +N ++R  AH  S+   A + YR+ML RG    D  T  F LKACA +    E  Q+H  +++H              +Y   G +  A+KVFDEM  R + SWN++I  L +      A+ LF+ M+    F+P+  T+   L+AC  LG
Sbjct:   64 LKQLHAFTLRTTYPEEPATLFLYGKILQLS--SSFSDVNYAFRVFDSIENHSSFMWNTLIRACAHDVSRKEEAFMLYRKMLERGESSPDKHTFPFVLKACAYIFGFSEGKQVHCQIVKHGFGGDVYVNNGLIHLYGSCGCLDLARKVFDEMPERSLVSWNSMIDALVRFGEYDSALQLFREMQRS--FEPDGYTMQSVLSACAGLG 265          

HSP 2 Score: 77.411 bits (189), Expect = 7.618e-14
Identity = 57/172 (33.14%), Postives = 83/172 (48.26%), Query Frame = 1
Query:  175 LAYAHALFRQINAPSTNDFNAILRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHXXXXXXXXXXXXXXV---YAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRM--KMEGVFKPNEVTVLGALAACGHLG 675
            L  A  +F ++   S   +N+++  L    +  +A+  +R+M R S   D  T    L ACA + +L      H+ +LR               +   Y K G +  A++VF  M  RD+ASWNA+I G A    A EA++ F RM  K E V +PN VT +G L AC H G
Sbjct:  202 LDLARKVFDEMPERSLVSWNSMIDALVRFGEYDSALQLFREMQR-SFEPDGYTMQSVLSACAGLGSLSLGTWAHAFLLRKCDVDVAMDVLVKNSLIEMYCKCGSLRMAEQVFQGMQKRDLASWNAMILGFATHGRAEEAMNFFDRMVDKRENV-RPNSVTFVGLLIACNHRG 371          
BLAST of FC878063 vs. ExPASy Swiss-Prot
Match: PP237_ARATH (Pentatricopeptide repeat-containing protein At3g16610 OS=Arabidopsis thaliana GN=PCMP-E91 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 7.865e-19
Identity = 58/183 (31.69%), Postives = 85/183 (46.45%), Query Frame = 1
Query:  127 VRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAILRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHXXXXXXXXXXXXXXVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLG 675
            V++ II FYA      L  A   F +I       +N+++ G   + +P  +   + +M     R D  T    L AC+ + AL      H + + H              +Y K G++  AK+VFD M  RDI SWN ++ G     L  EA+ LF  M+  GV  P+EVT+L  L+AC H G
Sbjct:  345 VQNTIISFYA--KYGSLCDAFRQFSEIGLKDVISYNSLITGCVVNCRPEESFRLFHEMRTSGIRPDITTLLGVLTACSHLAALGHGSSCHGYCVVHGYAVNTSICNALMDMYTKCGKLDVAKRVFDTMHKRDIVSWNTMLFGFGIHGLGKEALSLFNSMQETGV-NPDEVTLLAILSACSHSG 524          

HSP 2 Score: 85.1149 bits (209), Expect = 3.653e-16
Identity = 65/226 (28.76%), Postives = 100/226 (44.25%), Query Frame = 1
Query:    4 ALISTHCYKNAVVMSHFSHIHIKQLQAHLTTTGQFQSKLCPVRSKIIEFYALSPLNELAYAHALFRQINAPSTND--FNAILRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHXXXXXXXXXXXXXXVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLG 675
            +L+ T      +V+    H H+ +    L+++         V   +   YA    NE+  A  +F +I  P  N   ++ ++R  A +     A+  Y +ML    R    T  F LKACA + A+ +   IHSHV                  YAK GE+  A KVFDEM  RD+ +WNA+I+G +     ++ + LF  M+      PN  T++G   A G  G
Sbjct:    4 SLLETCIRSRNLVLGQVIHQHLLKRSLTLSSS--------TVLVNLTRLYA--SCNEVELARHVFDEIPHPRINPIAWDLMIRAYASNDFAEKALDLYYKMLNSGVRPTKYTYPFVLKACAGLRAIDDGKLIHSHVNCSDFATDMYVCTALVDFYAKCGELEMAIKVFDEMPKRDMVAWNAMISGFSLHCCLTDVIGLFLDMRRIDGLSPNLSTIVGMFPALGRAG 219          
BLAST of FC878063 vs. ExPASy Swiss-Prot
Match: PP280_ARATH (Pentatricopeptide repeat-containing protein At3g53360, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E86 PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.752e-18
Identity = 52/156 (33.33%), Postives = 77/156 (49.36%), Query Frame = 1
Query:  208 NAPSTNDFNAILRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHXXXXXXXXXXXXXXVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLG 675
            NA S + +N IL       +P   +  ++ ML      D +T    L+ C  + +L    Q+H + L+               +YAK G +  A+++FD M  RD+ SW+ LI G AQ     EA+ LFK MK  G+ +PN VT +G L AC H+G
Sbjct:  435 NADSVS-WNTILTACLQHEQPVEMLRLFKLMLVSECEPDHITMGNLLRGCVEISSLKLGSQVHCYSLKTGLAPEQFIKNGLIDMYAKCGSLGQARRIFDSMDNRDVVSWSTLIVGYAQSGFGEEALILFKEMKSAGI-EPNHVTFVGVLTACSHVG 588          

HSP 2 Score: 68.5514 bits (166), Expect = 3.539e-11
Identity = 47/165 (28.48%), Postives = 80/165 (48.48%), Query Frame = 1
Query:  169 NELAYAHALFRQINAPSTNDFNAILRGLAHSSKPTNAVLWYRQMLR-GSHRSDALTCSFALKACARVLALFETLQIHSHVLRHXXXXXXXXXXXXXXVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAA 660
            N+++ A  +F  I       +++I+ G +       A+   ++ML  G    +      +LKAC+ +L      QIH   ++               +YA+ G + SA++VFD++   D ASWN +IAGLA    A EAV +F +M+  G F P+ +++   L A
Sbjct:  217 NQMSDASRVFYGIPMKDLISWSSIIAGFSQLGFEFEALSHLKEMLSFGVFHPNEYIFGSSLKACSSLLRPDYGSQIHGLCIKSELAGNAIAGCSLCDMYARCGFLNSARRVFDQIERPDTASWNVIIAGLANNGYADEAVSVFSQMRSSG-FIPDAISLRSLLCA 380          
BLAST of FC878063 vs. ExPASy Swiss-Prot
Match: PP369_ARATH (Pentatricopeptide repeat-containing protein At5g08305 OS=Arabidopsis thaliana GN=PCMP-E105 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.098e-18
Identity = 60/216 (27.78%), Postives = 101/216 (46.76%), Query Frame = 1
Query:  124 PVRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAILRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARV---------------------LALFETLQIHSH-----------VLRHXXXXXXXXXXXXXXVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLG 675
            P  S+ + F ALS   ++ YA+    +++ P    +N ++RG ++S  P  ++  Y QMLR     D +T  F +K+ +R+                     L +  TL IH +           +                  YAK G++VSA+ VFDEM  RD+ +W+++I G  +    ++A+++F +M   G  K NEVT++  + AC HLG
Sbjct:   41 PFVSQTLSFSALSSSGDVDYAYKFLSKLSDPPNYGWNFVIRGFSNSRNPEKSISVYIQMLRFGLLPDHMTYPFLMKSSSRLSNRKLGGSLHCSVVKSGLEWDLFICNTL-IHMYGSFRDQASARKLFDEMPHKNLVTWNSILDAYAKSGDVVSARLVFDEMSERDVVTWSSMIDGYVKRGEYNKALEIFDQMMRMGSSKANEVTMVSVICACAHLG 255          

HSP 2 Score: 73.1738 bits (178), Expect = 1.437e-12
Identity = 53/184 (28.80%), Postives = 89/184 (48.37%), Query Frame = 1
Query:  133 SKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAILRGLAHSSKPTNAVLWYRQMLR-GSHRSDALTCSFALKACARVLALFETLQIHSHVLRHXXXXXXXXXXXXXXVYAKVGEIVSAKKVFDEMGVR--DIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLG 675
            + I++ YA S   ++  A  +F +++      +++++ G     +   A+  + QM+R GS +++ +T    + ACA + AL     +H ++L                +YAK G I  A  VF    V+  D   WNA+I GLA      E++ LF +M+ E    P+E+T L  LAAC H G
Sbjct:  178 NSILDAYAKS--GDVVSARLVFDEMSERDVVTWSSMIDGYVKRGEYNKALEIFDQMMRMGSSKANEVTMVSVICACAHLGALNRGKTVHRYILDVHLPLTVILQTSLIDMYAKCGSIGDAWSVFYRASVKETDALMWNAIIGGLASHGFIRESLQLFHKMR-ESKIDPDEITFLCLLAACSHGG 358          
BLAST of FC878063 vs. ExPASy Swiss-Prot
Match: PP224_ARATH (Pentatricopeptide repeat-containing protein At3g12770 OS=Arabidopsis thaliana GN=PCMP-H43 PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 6.658e-18
Identity = 52/168 (30.95%), Postives = 88/168 (52.38%), Query Frame = 1
Query:  172 ELAYAHALFRQINAPSTNDFNAILRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHXXXXXXXXXXXXXXVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLG 675
            ++A A  LF ++ +P+   +NA++ G A +     A+  + +M+    R D ++ + A+ ACA+V +L +   ++ +V R               ++AK G +  A+ VFD    RD+  W+A+I G      A EA+ L++ M+  GV  PN+VT LG L AC H G
Sbjct:  272 QVATAKILFDKMKSPNLILWNAMISGYAKNGYAREAIDMFHEMINKDVRPDTISITSAISACAQVGSLEQARSMYEYVGRSDYRDDVFISSALIDMFAKCGSVEGARLVFDRTLDRDVVVWSAMIVGYGLHGRAREAISLYRAMERGGV-HPNDVTFLGLLMACNHSG 438          

HSP 2 Score: 75.8702 bits (185), Expect = 2.216e-13
Identity = 61/223 (27.35%), Postives = 106/223 (47.53%), Query Frame = 1
Query:    1 NALISTHCYKNAVVMSHFSHIHIKQLQAHLTTTG-QFQSKLCPVRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAILRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHXXXXXXXXXXXXXXVYAKVGEIVSAKKVFDEMGV--RDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAA 660
            N+ I +  +  +++ S      +KQ+ A L   G QF   L    +K+I  +A S   ++ +A  +F  +  P    +NAI+RG + ++   +A+L Y  M       D+ T    LKAC+ +  L     +H+ V R               +YAK   + SA+ VF+ + +  R I SW A+++  AQ     EA+++F +M+   V KP+ V ++  L A
Sbjct:   15 NSGIHSDSFYASLIDSATHKAQLKQIHARLLVLGLQFSGFLI---TKLI--HASSSFGDITFARQVFDDLPRPQIFPWNAIIRGYSRNNHFQDALLMYSNMQLARVSPDSFTFPHLLKACSGLSHLQMGRFVHAQVFRLGFDADVFVQNGLIALYAKCRRLGSARTVFEGLPLPERTIVSWTAIVSAYAQNGEPMEALEIFSQMRKMDV-KPDWVALVSVLNA 231          

HSP 3 Score: 74.3294 bits (181), Expect = 6.449e-13
Identity = 49/185 (26.49%), Postives = 90/185 (48.65%), Query Frame = 1
Query:  127 VRSKIIEFYALSPLNELAYAHALFRQINAPSTN--DFNAILRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHXXXXXXXXXXXXXXVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLG 675
            V++ +I  YA      L  A  +F  +  P      + AI+   A + +P  A+  + QM +   + D +     L A   +  L +   IH+ V++               +YAK G++ +AK +FD+M   ++  WNA+I+G A+   A EA+D+F  M  + V +P+ +++  A++AC  +G
Sbjct:  156 VQNGLIALYA--KCRRLGSARTVFEGLPLPERTIVSWTAIVSAYAQNGEPMEALEIFSQMRKMDVKPDWVALVSVLNAFTCLQDLKQGRSIHASVVKMGLEIEPDLLISLNTMYAKCGQVATAKILFDKMKSPNLILWNAMISGYAKNGYAREAIDMFHEMINKDV-RPDTISITSAISACAQVG 337          
The following BLAST results are available for this feature:
BLAST of FC878063 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 154
Match NameE-valueIdentityDescription
PPR21_ARATH2.070e-1932.86Pentatricopeptide repeat-containing protein At1g08... [more]
PP367_ARATH2.703e-1928.71Pentatricopeptide repeat-containing protein At5g06... [more]
PP330_ARATH2.703e-1929.51Pentatricopeptide repeat-containing protein At4g21... [more]
PP165_ARATH2.703e-1926.92Pentatricopeptide repeat-containing protein At2g20... [more]
PP321_ARATH3.530e-1932.43Pentatricopeptide repeat-containing protein At4g18... [more]
PPR85_ARATH6.022e-1932.04Pentatricopeptide repeat-containing protein At1g59... [more]
PP237_ARATH7.865e-1931.69Pentatricopeptide repeat-containing protein At3g16... [more]
PP280_ARATH1.752e-1833.33Pentatricopeptide repeat-containing protein At3g53... [more]
PP369_ARATH5.098e-1827.78Pentatricopeptide repeat-containing protein At5g08... [more]
PP224_ARATH6.658e-1830.95Pentatricopeptide repeat-containing protein At3g12... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAQ12YE14RM1 IVIA1 Citrus clementina cDNA clone KN0AAQ12YE14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878063 ID=FC878063; Name=FC878063; organism=Citrus clementina; type=EST; length=676bp
AATGCGCTAATCTCAACGCACTGTTACAAAAATGCAGTAGTAATGTCCCA
TTTCTCTCACATTCACATAAAGCAACTACAAGCTCACCTTACTACCACCG
GCCAATTCCAATCCAAATTGTGCCCCGTTCGATCCAAAATCATCGAATTT
TACGCGCTTTCTCCTCTCAACGAGCTCGCTTACGCACACGCTTTGTTCCG
CCAAATCAACGCGCCTTCCACCAACGACTTTAACGCTATCCTCCGAGGCC
TCGCCCACTCTTCGAAACCCACGAACGCCGTCCTATGGTACCGCCAAATG
TTACGCGGGTCCCACAGGTCCGACGCGCTCACGTGCTCGTTTGCTCTCAA
AGCATGCGCGCGTGTCCTGGCTTTGTTTGAGACTTTACAGATTCATTCGC
ACGTTTTGCGTCATGGGTTCTTGGCTGATGCGTTGTTGGGTACTACTTTG
TTGGATGTCTATGCGAAAGTTGGCGAGATTGTAAGTGCTAAGAAGGTGTT
TGATGAAATGGGTGTGAGAGACATTGCGTCGTGGAATGCGTTGATTGCTG
GGTTGGCTCAGGGGAATTTGGCGAGTGAAGCAGTTGATTTGTTTAAGAGG
ATGAAAATGGAGGGTGTTTTTAAGCCTAATGAGGTTACGGTTCTGGGAGC
TTTGGCGGCGTGTGGTCATTTGGGTG
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