FC878063

Overview
NameFC878063
Unique NameFC878063
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length676
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC878063 vs. ExPASy Swiss-Prot
Match: PP423_ARATH (Putative pentatricopeptide repeat-containing protein At5g47460 OS=Arabidopsis thaliana GN=PCMP-E103 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.622e-11
Identity = 42/152 (27.63%), Postives = 71/152 (46.71%), Query Frame = 1
Query:  214 PSTNDFNAILRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHXXXXXXXXXXXXXXVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGH 669
            P+++ +N IL G  +S K   A  ++ +M     R D  + S  L A A +  +     IH+   +               +Y+K G +  A+ +F  M  +++  WN +I+G A+   + EA+ LF ++K E   KP+  T L  LA C H
Sbjct:  283 PNSSSWNTILTGYVNSEKSGEATEFFTKMHSSGVRFDEYSLSIVLAAVAALAVVPWGSLIHACAHKLGLDSRVVVASALIDMYSKCGMLKHAELMFWTMPRKNLIVWNEMISGYARNGDSIEAIKLFNQLKQERFLKPDRFTFLNLLAVCSH 434          
BLAST of FC878063 vs. ExPASy Swiss-Prot
Match: PP394_ARATH (Pentatricopeptide repeat-containing protein At5g19020, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E42 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.622e-11
Identity = 48/168 (28.57%), Postives = 80/168 (47.62%), Query Frame = 1
Query:  184 AHALFRQINAPSTNDFNAILRGLAHSSKPTNAVLWYRQMLRGSH-RSDALTCSFALKACARVLALFETLQIHSHVLRHXXXXXXXXXXXXXXVYAKVGEIVSAKKVFDE---MGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLG 675
            A  +F Q +      +NA++ G A S  P  A+  +R+M+  S  + DA+T      A + + +L E  + H ++                 +YAK G I +A  +F +   +    I+ WNA+I G A    A  A+DL+  ++   + KPN +T +G L+AC H G
Sbjct:  390 AREVFDQTHDKDIFSWNAMISGYAQSLSPQLALHLFREMISSSQVKPDAITMVSVFSAISSLGSLEEGKRAHDYLNFSTIPPNDNLTAAIIDMYAKCGSIETALNIFHQTKNISSSTISPWNAIICGSATHGHAKLALDLYSDLQSLPI-KPNSITFVGVLSACCHAG 556          
BLAST of FC878063 vs. ExPASy Swiss-Prot
Match: PP390_ARATH (Pentatricopeptide repeat-containing protein At5g16860 OS=Arabidopsis thaliana GN=PCMP-H92 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.036e-11
Identity = 56/189 (29.63%), Postives = 88/189 (46.56%), Query Frame = 1
Query:  127 VRSKIIEFYALSPLNELAYAHALFRQINAPSTND---FNAILRGLAHSSKPTNAVLWYRQMLRGS--HRSDALTCSFALKACARVLALFETLQIHSHVLRHXXXXXXXXXXXXXX-VYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLG 675
            V +++I+ YA     ++  A A+F  ++ P   D   +  ++ G +       A+    +M       R +A T S AL ACA + AL    QIH++ LR+               +YAK G I  A+ VFD M  ++  +W +L+ G        EA+ +F  M+  G FK + VT+L  L AC H G
Sbjct:  409 VINQLIDMYA--KCKKVDTARAMFDSLS-PKERDVVTWTVMIGGYSQHGDANKALELLSEMFEEDCQTRPNAFTISCALVACASLAALRIGKQIHAYALRNQQNAVPLFVSNCLIDMYAKCGSISDARLVFDNMMAKNEVTWTSLMTGYGMHGYGEEALGIFDEMRRIG-FKLDGVTLLVVLYACSHSG 593          
BLAST of FC878063 vs. ExPASy Swiss-Prot
Match: PP189_ARATH (Pentatricopeptide repeat-containing protein At2g36980, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E73 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.883e-11
Identity = 40/157 (25.48%), Postives = 69/157 (43.95%), Query Frame = 1
Query:  211 APSTN--DFNAILRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHXXXXXXXXXXXXXXVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLG 675
            AP  N   +  ++ G   +     A+ ++ +M++    SD       L AC+ +  L     IH  ++                +YAK G+I  A + F ++  +D+ SWN ++       LA +A+ L+  M   G+ KP+ VT +G L  C H G
Sbjct:  297 APEKNIVTWTTMITGYGRNGDGEQALRFFVEMMKSGVDSDHFAYGAVLHACSGLALLGHGKMIHGCLIHCGFQGYAYVGNALVNLYAKCGDIKEADRAFGDIANKDLVSWNTMLFAFGVHGLADQALKLYDNMIASGI-KPDNVTFIGLLTTCSHSG 452          
The following BLAST results are available for this feature:
BLAST of FC878063 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 154
Match NameE-valueIdentityDescription
PP423_ARATH4.622e-1127.63Putative pentatricopeptide repeat-containing prote... [more]
PP394_ARATH4.622e-1128.57Pentatricopeptide repeat-containing protein At5g19... [more]
PP390_ARATH6.036e-1129.63Pentatricopeptide repeat-containing protein At5g16... [more]
PP189_ARATH7.883e-1125.48Pentatricopeptide repeat-containing protein At2g36... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAQ12YE14RM1 IVIA1 Citrus clementina cDNA clone KN0AAQ12YE14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878063 ID=FC878063; Name=FC878063; organism=Citrus clementina; type=EST; length=676bp
AATGCGCTAATCTCAACGCACTGTTACAAAAATGCAGTAGTAATGTCCCA
TTTCTCTCACATTCACATAAAGCAACTACAAGCTCACCTTACTACCACCG
GCCAATTCCAATCCAAATTGTGCCCCGTTCGATCCAAAATCATCGAATTT
TACGCGCTTTCTCCTCTCAACGAGCTCGCTTACGCACACGCTTTGTTCCG
CCAAATCAACGCGCCTTCCACCAACGACTTTAACGCTATCCTCCGAGGCC
TCGCCCACTCTTCGAAACCCACGAACGCCGTCCTATGGTACCGCCAAATG
TTACGCGGGTCCCACAGGTCCGACGCGCTCACGTGCTCGTTTGCTCTCAA
AGCATGCGCGCGTGTCCTGGCTTTGTTTGAGACTTTACAGATTCATTCGC
ACGTTTTGCGTCATGGGTTCTTGGCTGATGCGTTGTTGGGTACTACTTTG
TTGGATGTCTATGCGAAAGTTGGCGAGATTGTAAGTGCTAAGAAGGTGTT
TGATGAAATGGGTGTGAGAGACATTGCGTCGTGGAATGCGTTGATTGCTG
GGTTGGCTCAGGGGAATTTGGCGAGTGAAGCAGTTGATTTGTTTAAGAGG
ATGAAAATGGAGGGTGTTTTTAAGCCTAATGAGGTTACGGTTCTGGGAGC
TTTGGCGGCGTGTGGTCATTTGGGTG
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