FC878063
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC878063 vs. ExPASy Swiss-Prot
Match: PP423_ARATH (Putative pentatricopeptide repeat-containing protein At5g47460 OS=Arabidopsis thaliana GN=PCMP-E103 PE=3 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 4.622e-11 Identity = 42/152 (27.63%), Postives = 71/152 (46.71%), Query Frame = 1 Query: 214 PSTNDFNAILRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHXXXXXXXXXXXXXXVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGH 669 P+++ +N IL G +S K A ++ +M R D + S L A A + + IH+ + +Y+K G + A+ +F M +++ WN +I+G A+ + EA+ LF ++K E KP+ T L LA C H Sbjct: 283 PNSSSWNTILTGYVNSEKSGEATEFFTKMHSSGVRFDEYSLSIVLAAVAALAVVPWGSLIHACAHKLGLDSRVVVASALIDMYSKCGMLKHAELMFWTMPRKNLIVWNEMISGYARNGDSIEAIKLFNQLKQERFLKPDRFTFLNLLAVCSH 434
BLAST of FC878063 vs. ExPASy Swiss-Prot
Match: PP394_ARATH (Pentatricopeptide repeat-containing protein At5g19020, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E42 PE=2 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 4.622e-11 Identity = 48/168 (28.57%), Postives = 80/168 (47.62%), Query Frame = 1 Query: 184 AHALFRQINAPSTNDFNAILRGLAHSSKPTNAVLWYRQMLRGSH-RSDALTCSFALKACARVLALFETLQIHSHVLRHXXXXXXXXXXXXXXVYAKVGEIVSAKKVFDE---MGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLG 675 A +F Q + +NA++ G A S P A+ +R+M+ S + DA+T A + + +L E + H ++ +YAK G I +A +F + + I+ WNA+I G A A A+DL+ ++ + KPN +T +G L+AC H G Sbjct: 390 AREVFDQTHDKDIFSWNAMISGYAQSLSPQLALHLFREMISSSQVKPDAITMVSVFSAISSLGSLEEGKRAHDYLNFSTIPPNDNLTAAIIDMYAKCGSIETALNIFHQTKNISSSTISPWNAIICGSATHGHAKLALDLYSDLQSLPI-KPNSITFVGVLSACCHAG 556
BLAST of FC878063 vs. ExPASy Swiss-Prot
Match: PP390_ARATH (Pentatricopeptide repeat-containing protein At5g16860 OS=Arabidopsis thaliana GN=PCMP-H92 PE=2 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 6.036e-11 Identity = 56/189 (29.63%), Postives = 88/189 (46.56%), Query Frame = 1 Query: 127 VRSKIIEFYALSPLNELAYAHALFRQINAPSTND---FNAILRGLAHSSKPTNAVLWYRQMLRGS--HRSDALTCSFALKACARVLALFETLQIHSHVLRHXXXXXXXXXXXXXX-VYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLG 675 V +++I+ YA ++ A A+F ++ P D + ++ G + A+ +M R +A T S AL ACA + AL QIH++ LR+ +YAK G I A+ VFD M ++ +W +L+ G EA+ +F M+ G FK + VT+L L AC H G Sbjct: 409 VINQLIDMYA--KCKKVDTARAMFDSLS-PKERDVVTWTVMIGGYSQHGDANKALELLSEMFEEDCQTRPNAFTISCALVACASLAALRIGKQIHAYALRNQQNAVPLFVSNCLIDMYAKCGSISDARLVFDNMMAKNEVTWTSLMTGYGMHGYGEEALGIFDEMRRIG-FKLDGVTLLVVLYACSHSG 593
BLAST of FC878063 vs. ExPASy Swiss-Prot
Match: PP189_ARATH (Pentatricopeptide repeat-containing protein At2g36980, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E73 PE=2 SV=1) HSP 1 Score: 67.3958 bits (163), Expect = 7.883e-11 Identity = 40/157 (25.48%), Postives = 69/157 (43.95%), Query Frame = 1 Query: 211 APSTN--DFNAILRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHXXXXXXXXXXXXXXVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLG 675 AP N + ++ G + A+ ++ +M++ SD L AC+ + L IH ++ +YAK G+I A + F ++ +D+ SWN ++ LA +A+ L+ M G+ KP+ VT +G L C H G Sbjct: 297 APEKNIVTWTTMITGYGRNGDGEQALRFFVEMMKSGVDSDHFAYGAVLHACSGLALLGHGKMIHGCLIHCGFQGYAYVGNALVNLYAKCGDIKEADRAFGDIANKDLVSWNTMLFAFGVHGLADQALKLYDNMIASGI-KPDNVTFIGLLTTCSHSG 452 The following BLAST results are available for this feature:
BLAST of FC878063 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 154
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Sequences
The
following sequences are available for this feature:
EST sequence >FC878063 ID=FC878063; Name=FC878063; organism=Citrus clementina; type=EST; length=676bpback to top |