FC878063
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC878063 vs. ExPASy Swiss-Prot
Match: PPR48_ARATH (Pentatricopeptide repeat-containing protein At1g18485 OS=Arabidopsis thaliana GN=PCMP-H8 PE=2 SV=2) HSP 1 Score: 83.5741 bits (205), Expect = 1.063e-15 Identity = 51/168 (30.36%), Postives = 81/168 (48.21%), Query Frame = 1 Query: 172 ELAYAHALFRQINAPSTNDFNAILRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHXXXXXXXXXXXXXXVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLG 675 EL ALF + S +N ++ G + P A+ +RQM+ + ++ AC+ + +L + H++ L+H +YAK G I + KVF+ + + ASWNA+I G LA EA+ LF+ M+ G P+++T LG L AC H G Sbjct: 546 ELCTVQALFDAMEDKSLVSWNTVITGYLQNGFPDRALGVFRQMVLYGIQLCGISMMPVFGACSLLPSLRLGREAHAYALKHLLEDDAFIACSLIDMYAKNGSITQSSKVFNGLKEKSTASWNAMIMGYGIHGLAKEAIKLFEEMQRTG-HNPDDLTFLGVLTACNHSG 712 HSP 2 Score: 72.4034 bits (176), Expect = 2.451e-12 Identity = 38/148 (25.68%), Postives = 73/148 (49.32%), Query Frame = 1 Query: 175 LAYAHALFRQINAPSTNDFNAILRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHXXXXXXXXXXXXXXVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGV 618 L+YA +F I + + N +NA++ G A S+ P ++ + QM D+ T L AC+++ +L ++H ++R+ +Y GE+ + + +FD M + + SWN +I G Q A+ +F++M + G+ Sbjct: 446 LSYAQRVFHGIRSKTVNSWNALIGGHAQSNDPRLSLDAHLQMKISGLLPDSFTVCSLLSACSKLKSLRLGKEVHGFIIRNWLERDLFVYLSVLSLYIHCGELCTVQALFDAMEDKSLVSWNTVITGYLQNGFPDRALGVFRQMVLYGI 593
BLAST of FC878063 vs. ExPASy Swiss-Prot
Match: PP449_ARATH (Pentatricopeptide repeat-containing protein At5g66520 OS=Arabidopsis thaliana GN=PCMP-H61 PE=2 SV=1) HSP 1 Score: 83.5741 bits (205), Expect = 1.063e-15 Identity = 66/235 (28.09%), Postives = 103/235 (43.83%), Query Frame = 1 Query: 67 IKQLQAHLTTTGQFQSKLCPVRSKIIEFYALSPLNE-LAYAHALFRQINAPSTNDFNAILRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHXXXXXXXXXXXXXXVYAKVGEIVSAKKVFDEM------------------GVRDIA-------------SWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLG 675 +KQ+ A + TG Q +K + F S ++ L YA +F + P T +N ++RG + S +P ++L Y++ML S +A T LKAC+ + A ET QIH+ + + YA G A +FD + G DIA SW +I+G Q ++ EA+ LF M+ V +P+ V++ AL+AC LG Sbjct: 30 LKQIHARMLKTGLMQDSYAI--TKFLSFCISSTSSDFLPYAQIVFDGFDRPDTFLWNLMIRGFSCSDEPERSLLLYQRMLCSSAPHNAYTFPSLLKACSNLSAFEETTQIHAQITKLGYENDVYAVNSLINSYAVTGNFKLAHLLFDRIPEPDDVSWNSVIKGYVKAGKMDIALTLFRKMAEKNAISWTTMISGYVQADMNKEALQLFHEMQNSDV-EPDNVSLANALSACAQLG 261 HSP 2 Score: 76.6406 bits (187), Expect = 1.299e-13 Identity = 60/232 (25.86%), Postives = 101/232 (43.53%), Query Frame = 1 Query: 73 QLQAHLTTTGQFQSKLCPVRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAILRGLAHSSK------------PTNAVLW-------------------YRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHXXXXXXXXXXXXXXVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLG 675 Q+ A +T G +++ + V S +I YA++ AH LF +I P +N++++G + K NA+ W + +M D ++ + AL ACA++ AL + IHS++ + +YAK GE+ A +VF + + + +W ALI+G A EA+ F M+ G+ KPN +T L AC + G Sbjct: 136 QIHAQITKLG-YENDVYAVNS-LINSYAVT--GNFKLAHLLFDRIPEPDDVSWNSVIKGYVKAGKMDIALTLFRKMAEKNAISWTTMISGYVQADMNKEALQLFHEMQNSDVEPDNVSLANALSACAQLGALEQGKWIHSYLNKTRIRMDSVLGCVLIDMYAKCGEMEEALEVFKNIKKKSVQAWTALISGYAYHGHGREAISKFMEMQKMGI-KPNVITFTAVLTACSYTG 362
BLAST of FC878063 vs. ExPASy Swiss-Prot
Match: PP377_ARATH (Putative pentatricopeptide repeat-containing protein At5g13230, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H89 PE=3 SV=1) HSP 1 Score: 83.5741 bits (205), Expect = 1.063e-15 Identity = 54/183 (29.51%), Postives = 93/183 (50.82%), Query Frame = 1 Query: 127 VRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAILRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHXXXXXXXXXXXXXXVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLG 675 V + +I+ YA ++ A LF ++++ + +N ++ G + + A +R+ LR +T S AL ACA + ++ +Q+H ++ +YAK G+I A+ VF+EM D+ASWNALI+G + L +A+ + MK + KPN +T LG L+ C + G Sbjct: 385 VSNALIDVYA--KCEKMDTAVKLFAELSSKNEVSWNTVIVGYENLGEGGKAFSMFREALRNQVSVTEVTFSSALGACASLASMDLGVQVHGLAIKTNNAKKVAVSNSLIDMYAKCGDIKFAQSVFNEMETIDVASWNALISGYSTHGLGRQALRILDIMK-DRDCKPNGLTFLGVLSGCSNAG 564
BLAST of FC878063 vs. ExPASy Swiss-Prot
Match: PP354_ARATH (Pentatricopeptide repeat-containing protein At4g37380, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H48 PE=2 SV=1) HSP 1 Score: 83.5741 bits (205), Expect = 1.063e-15 Identity = 60/199 (30.15%), Postives = 88/199 (44.22%), Query Frame = 1 Query: 172 ELAYAHALFRQINAPSTNDFNAILRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHXXXXXXXXXXXXXXVYAKVGEIVSAKKVFDEMGVR-------------------------------DIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLG 675 ++ ++ ALF Q P F A + + + A L Y Q+L + T S LK+C+ IH+HVL+ VYAK G++VSA+KVFD M R DI SWN +I G AQ ++A+ LF+++ EG KP+E+TV+ AL+AC +G Sbjct: 79 KIRHSLALFHQTIDPDLFLFTAAINTASINGLKDQAFLLYVQLLSSEINPNEFTFSSLLKSCSTKSGKL----IHTHVLKFGLGIDPYVATGLVDVYAKGGDVVSAQKVFDRMPERSLVSSTAMITCYAKQGNVEAARALFDSMCERDIVSWNVMIDGYAQHGFPNDALMLFQKLLAEGKPKPDEITVVAALSACSQIG 273 HSP 2 Score: 81.6481 bits (200), Expect = 4.039e-15 Identity = 49/165 (29.70%), Postives = 81/165 (49.09%), Query Frame = 1 Query: 184 AHALFRQINAPSTNDFNAILRGLAHSSKPTNAVLWYRQML-RGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHXXXXXXXXXXXXXXVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLG 675 A ALF + +N ++ G A P +A++ ++++L G + D +T AL AC+++ AL IH V +Y+K G + A VF++ +DI +WNA+IAG A + +A+ LF M+ +P ++T +G L AC H G Sbjct: 211 ARALFDSMCERDIVSWNVMIDGYAQHGFPNDALMLFQKLLAEGKPKPDEITVVAALSACSQIGALETGRWIHVFVKSSRIRLNVKVCTGLIDMYSKCGSLEEAVLVFNDTPRKDIVAWNAMIAGYAMHGYSQDALRLFNEMQGITGLQPTDITFIGTLQACAHAG 375
BLAST of FC878063 vs. ExPASy Swiss-Prot
Match: PP316_ARATH (Pentatricopeptide repeat-containing protein At4g16835, mitochondrial OS=Arabidopsis thaliana GN=DYW10 PE=2 SV=2) HSP 1 Score: 83.5741 bits (205), Expect = 1.063e-15 Identity = 58/193 (30.05%), Postives = 96/193 (49.74%), Query Frame = 1 Query: 115 KLCPVRSKI-----IEFYALSPLNELAYAHALFRQINA-PSTNDFNAILRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHXXXXXXXXXXXXXXVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLG 675 K+ PVR + I Y + ELA A+F+ + + +NA++ G +S+P + + +R ML R ++ S AL C+ + AL QIH V + +Y K GE+ A K+F+ M +D+ +WNA+I+G AQ A +A+ LF+ M ++ +P+ +T + L AC H G Sbjct: 210 KVAPVRGVVAWTAMITGYMKAKKVELA--EAMFKDMTVNKNLVTWNAMISGYVENSRPEDGLKLFRAMLEEGIRPNSSGLSSALLGCSELSALQLGRQIHQIVSKSTLCNDVTALTSLISMYCKCGELGDAWKLFEVMKKKDVVAWNAMISGYAQHGNADKALCLFREM-IDNKIRPDWITFVAVLLACNHAG 399
BLAST of FC878063 vs. ExPASy Swiss-Prot
Match: PP151_ARATH (Pentatricopeptide repeat-containing protein At2g13600 OS=Arabidopsis thaliana GN=PCMP-E76 PE=2 SV=1) HSP 1 Score: 83.5741 bits (205), Expect = 1.063e-15 Identity = 58/193 (30.05%), Postives = 92/193 (47.67%), Query Frame = 1 Query: 124 PVRSKIIEFYALSPLNELAYAHA---LFRQINAPSTNDFNAILRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHXXXXXXXXXXXXXX------VYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLG 675 P+R+ I E +S A A +F ++ + +NA++ G + + A+ + + R S + + LKACA + L +Q H HVL+H +Y K G + VF +M RD SWNA+I G AQ +EA++LF+ M +E KP+ +T++G L+ACGH G Sbjct: 316 PIRNVIAETSMISGYAMAASTKAARLMFTKMAERNVVSWNALIAGYTQNGENEEALSLFCLLKRESVCPTHYSFANILKACADLAELHLGMQAHVHVLKHGFKFQSGEEDDIFVGNSLIDMYVKCGCVEEGYLVFRKMMERDCVSWNAMIIGFAQNGYGNEALELFREM-LESGEKPDHITMIGVLSACGHAG 507 HSP 2 Score: 83.1889 bits (204), Expect = 1.388e-15 Identity = 49/172 (28.49%), Postives = 89/172 (51.74%), Query Frame = 1 Query: 157 LSPLNELAYAHALFRQINAPSTNDFNAILRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHXXXXXXXXXXXXXXVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHL 672 L+ L L A +LFR + +N+++ G A + A+ ++ M + + + + L AC+ + + + +Q+HS + + +Y+K G + A++VFDEMG R++ SWN+LI Q A EA+D+F +M +E +P+EVT+ ++AC L Sbjct: 96 LTKLGFLDEADSLFRSMPERDQCTWNSMVSGFAQHDRCEEALCYFAMMHKEGFVLNEYSFASVLSACSGLNDMNKGVQVHSLIAKSPFLSDVYIGSALVDMYSKCGNVNDAQRVFDEMGDRNVVSWNSLITCFEQNGPAVEALDVF-QMMLESRVEPDEVTLASVISACASL 266
BLAST of FC878063 vs. ExPASy Swiss-Prot
Match: PPR8_ARATH (Pentatricopeptide repeat-containing protein At1g03540 OS=Arabidopsis thaliana GN=PCMP-E4 PE=2 SV=1) HSP 1 Score: 83.1889 bits (204), Expect = 1.388e-15 Identity = 54/202 (26.73%), Postives = 96/202 (47.52%), Query Frame = 1 Query: 70 KQLQAHLTTTGQFQSKLCPVRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAILRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHXXXXXXXXXXXXXXVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLG 675 K++ L T G + + V S +++ Y + A +F ++ ++ ++A+L G + + A+ +R+M D LKACA + A+ +IH +R +Y K G I SA +V+ +M +R++ +WNA+++ LAQ EAV F M +G+ KP+ ++ + L ACGH G Sbjct: 285 KEIHGKLITNGIGSNVV--VESSLLDMYG--KCGSVREARQVFNGMSKKNSVSWSALLGGYCQNGEHEKAIEIFREM----EEKDLYCFGTVLKACAGLAAVRLGKEIHGQYVRRGCFGNVIVESALIDLYGKSGCIDSASRVYSKMSIRNMITWNAMLSALAQNGRGEEAVSFFNDMVKKGI-KPDYISFIAILTACGHTG 477
BLAST of FC878063 vs. ExPASy Swiss-Prot
Match: PP301_ARATH (Pentatricopeptide repeat-containing protein At4g02750 OS=Arabidopsis thaliana GN=PCMP-H24 PE=2 SV=1) HSP 1 Score: 83.1889 bits (204), Expect = 1.388e-15 Identity = 51/168 (30.36%), Postives = 83/168 (49.40%), Query Frame = 1 Query: 172 ELAYAHALFRQINAPSTNDFNAILRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHXXXXXXXXXXXXXXVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLG 675 +++ A LF ++ + A++ G + S A+ + QM R R + + S AL CA V+AL Q+H +++ +Y K G I A +F EM +DI SWN +IAG ++ A+ F+ MK EG+ KP++ T++ L+AC H G Sbjct: 358 KISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHSFEALRLFVQMEREGGRLNRSSFSSALSTCADVVALELGKQLHGRLVKGGYETGCFVGNALLLMYCKCGSIEEANDLFKEMAGKDIVSWNTMIAGYSRHGFGEVALRFFESMKREGL-KPDDATMVAVLSACSHTG 524
BLAST of FC878063 vs. ExPASy Swiss-Prot
Match: PP172_ARATH (Pentatricopeptide repeat-containing protein At2g27610 OS=Arabidopsis thaliana GN=PCMP-H60 PE=2 SV=1) HSP 1 Score: 83.1889 bits (204), Expect = 1.388e-15 Identity = 59/215 (27.44%), Postives = 104/215 (48.37%), Query Frame = 1 Query: 34 AVVMSHFSHIHIKQLQAHLTTTGQFQSKLCPVRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAILRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLA-LFETLQIHSHVLRHXXXXXXXXXXXXXXVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLG 675 +V+++ I ++ A + T +S V + +++ Y L ++ A +F I+ ++A+L G A + + A+ + ++ +G + + T S L CA A + + Q H ++ +YAK G I SA++VF +D+ SWN++I+G AQ A +A+D+FK MK V K + VT +G AAC H G Sbjct: 401 SVILTALPVISPSEVHAQVVKTNYERSST--VGTALLDAYV--KLGKVEEAAKVFSGIDDKDIVAWSAMLAGYAQTGETEAAIKMFGELTKGGIKPNEFTFSSILNVCAATNASMGQGKQFHGFAIKSRLDSSLCVSSALLTMYAKKGNIESAEEVFKRQREKDLVSWNSMISGYAQHGQAMKALDVFKEMKKRKV-KMDGVTFIGVFAACTHAG 610 HSP 2 Score: 75.0998 bits (183), Expect = 3.781e-13 Identity = 55/196 (28.06%), Postives = 87/196 (44.39%), Query Frame = 1 Query: 76 LQAHLTTTGQFQSKLCPVRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAILRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHXXXXXXXXXXXXXXVYAKVGEIVSAKKVFDEMG-VRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAA 660 LQ H K PV + +I Y + A LF + S +N+++ G A + A+ + M R + + +K CA + L T Q+H V+++ Y+K ++ A ++F E+G V ++ SW A+I+G Q + EAVDLF MK +GV +PNE T L A Sbjct: 214 LQVHTVVVKNGLDKTIPVSNSLINLYL--KCGNVRKARILFDKTEVKSVVTWNSMISGYAANGLDLEALGMFYSMRLNYVRLSESSFASVIKLCANLKELRFTEQLHCSVVKYGFLFDQNIRTALMVAYSKCTAMLDALRLFKEIGCVGNVVSWTAMISGFLQNDGKEEAVDLFSEMKRKGV-RPNEFTYSVILTA 406
BLAST of FC878063 vs. ExPASy Swiss-Prot
Match: PP148_ARATH (Pentatricopeptide repeat-containing protein At2g04860 OS=Arabidopsis thaliana GN=PCMP-E74 PE=2 SV=2) HSP 1 Score: 83.1889 bits (204), Expect = 1.388e-15 Identity = 47/162 (29.01%), Postives = 83/162 (51.23%), Query Frame = 1 Query: 193 LFRQINAPSTNDFNAILRGLAHSSKPTNAV-LWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHXXXXXXXXXXXXXXVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLG 675 LF Q+ +N+++ G S + + A ++++ ML G DA+T + L C+++ L ++H + LR+ +YAK G V A+ VF + A+WN++I+G + L A+ + M+ +G+ KP+E+T LG L+AC H G Sbjct: 354 LFEQLQETPLISWNSVISGCVQSGRASTAFEVFHQMMLTGGLLPDAITIASLLAGCSQLCCLNLGKELHGYTLRNNFENENFVCTALIDMYAKCGNEVQAESVFKSIKAPCTATWNSMISGYSLSGLQHRALSCYLEMREKGL-KPDEITFLGVLSACNHGG 514 The following BLAST results are available for this feature:
BLAST of FC878063 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 154
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >FC878063 ID=FC878063; Name=FC878063; organism=Citrus clementina; type=EST; length=676bpback to top |