FC878063
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC878063 vs. ExPASy Swiss-Prot
Match: PP140_ARATH (Pentatricopeptide repeat-containing protein At2g01510, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H37 PE=2 SV=1) HSP 1 Score: 83.1889 bits (204), Expect = 1.388e-15 Identity = 46/170 (27.06%), Postives = 89/170 (52.35%), Query Frame = 1 Query: 166 LNELAYAHALFRQINAPSTNDFNAILRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHXXXXXXXXXXXXXXVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLG 675 + ++ YA +F +++ P +N + +G + P ++L Y++M R D T F +KA +++ +H+HV+++ +Y K GE+ SA+ +F+ M V+D+ +WNA +A Q ++ A++ F +M + V + + TV+ L+ACG LG Sbjct: 56 IGDMCYARQVFDEMHKPRIFLWNTLFKGYVRNQLPFESLLLYKKMRDLGVRPDEFTYPFVVKAISQLGDFSCGFALHAHVVKYGFGCLGIVATELVMMYMKFGELSSAEFLFESMQVKDLVAWNAFLAVCVQTGNSAIALEYFNKMCADAV-QFDSFTVVSMLSACGQLG 224 HSP 2 Score: 75.8702 bits (185), Expect = 2.216e-13 Identity = 47/168 (27.98%), Postives = 80/168 (47.62%), Query Frame = 1 Query: 172 ELAYAHALFRQINAPSTNDFNAILRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHXXXXXXXXXXXXXXVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLG 675 EL+ A LF + +NA L + A+ ++ +M + + D+ T L AC ++ +L +I+ + ++ K G +A+ +F+EM R++ SW+ +I G A + EA+ LF M+ EG+ +PN VT LG L+AC H G Sbjct: 159 ELSSAEFLFESMQVKDLVAWNAFLAVCVQTGNSAIALEYFNKMCADAVQFDSFTVVSMLSACGQLGSLEIGEEIYDRARKEEIDCNIIVENARLDMHLKCGNTEAARVLFEEMKQRNVVSWSTMIVGYAMNGDSREALTLFTTMQNEGL-RPNYVTFLGVLSACSHAG 325
BLAST of FC878063 vs. ExPASy Swiss-Prot
Match: PPR70_ARATH (Pentatricopeptide repeat-containing protein At1g33350 OS=Arabidopsis thaliana GN=PCMP-E57 PE=2 SV=1) HSP 1 Score: 82.8037 bits (203), Expect = 1.813e-15 Identity = 73/252 (28.97%), Postives = 115/252 (45.63%), Query Frame = 1 Query: 34 AVVMSHFSHI-HIKQLQAHLTTTGQFQSK-LCPVRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAILRGLAHSSKP---TNAVLWYRQML-RGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHXXXXXXXXXXXXXXVYAK-VGEIVSAKKVFDEMGVR-------------------------------DIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLG 675 + V+S H+ H+KQ+Q+ + +G S LC K++ F L N L+YA +F + + P+T+ + A+L + SS P ++A ++R M+ R R + LK+ + + F T +H+H+ + YA V I A+++FDEM R D+ SWNA++A Q L EAV LF+RM E +PNEVTV+ L+AC G Sbjct: 28 SAVISKSRHLNHLKQVQSFMIVSGLSHSHFLC---FKLLRFCTLRLCN-LSYARFIFDRFSFPNTHLYAAVLTAYS-SSLPLHASSAFSFFRLMVNRSVPRPNHFIYPLVLKSTPYLSSAFSTPLVHTHLFKSGFHLYVVVQTALLHSYASSVSHITLARQLFDEMSERNVVSWTAMLSGYARSGDISNAVALFEDMPERDVPSWNAILAACTQNGLFLEAVSLFRRMINEPSIRPNEVTVVCVLSACAQTG 274 HSP 2 Score: 68.5514 bits (166), Expect = 3.539e-11 Identity = 59/235 (25.11%), Postives = 100/235 (42.55%), Query Frame = 1 Query: 7 LISTHCYKNA-----VVMSHFSHIHIKQLQAHLTTTGQFQSKLCPVR----SKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAILRGLAHSSKPTNAVLWYRQMLRG-SHRSDALTCSFALKACARVLALFETLQIHSHVLRHXXXXXXXXXXXXXXVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGV--FKPNEVTVLGALAACGHLG 675 L+ TH +K+ VV + H + + +H+T Q ++ + ++ YA S +++ A ALF + +NAIL + AV +R+M+ S R + +T L ACA+ L IH+ R +Y K G + A VF + + +WN++I A + EA+ +F+ M + KP+ +T +G L AC H G Sbjct: 147 LVHTHLFKSGFHLYVVVQTALLHSYASSV-SHITLARQLFDEMSERNVVSWTAMLSGYARS--GDISNAVALFEDMPERDVPSWNAILAACTQNGLFLEAVSLFRRMINEPSIRPNEVTVVCVLSACAQTGTLQLAKGIHAFAYRRDLSSDVFVSNSLVDLYGKCGNLEEASSVFKMASKKSLTAWNSMINCFALHGRSEEAIAVFEEMMKLNINDIKPDHITFIGLLNACTHGG 378
BLAST of FC878063 vs. ExPASy Swiss-Prot
Match: PP415_ARATH (Pentatricopeptide repeat-containing protein At5g43790 OS=Arabidopsis thaliana GN=PCMP-E30 PE=2 SV=1) HSP 1 Score: 82.8037 bits (203), Expect = 1.813e-15 Identity = 56/206 (27.18%), Postives = 100/206 (48.54%), Query Frame = 1 Query: 58 HIHIKQLQAHLTTTGQFQSKLCPVRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAILRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHXXXXXXXXXXXXXXVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLG 675 H H + L AH+ + + V++ ++ FYA +L A +LF +I P +N +L A+S + + +R R + L+ +K+CA + + H +VL++ +Y+K G + A+KVFDEM RD++ +NA+I GLA E ++L+K + +G+ P+ T + ++AC H G Sbjct: 129 HRHGRALHAHVLKFLEPVNHDRFVQAALVGFYA--NCGKLREARSLFERIREPDLATWNTLLAAYANSEEIDSDEEVLLLFMRMQVRPNELSLVALIKSCANLGEFVRGVWAHVYVLKNNLTLNQFVGTSLIDLYSKCGCLSFARKVFDEMSQRDVSCYNAMIRGLAVHGFGQEGIELYKSLISQGLV-PDSATFVVTISACSHSG 331
BLAST of FC878063 vs. ExPASy Swiss-Prot
Match: PP276_ARATH (Pentatricopeptide repeat-containing protein At3g49740 OS=Arabidopsis thaliana GN=PCMP-E84 PE=2 SV=1) HSP 1 Score: 82.8037 bits (203), Expect = 1.813e-15 Identity = 51/176 (28.98%), Postives = 83/176 (47.16%), Query Frame = 1 Query: 154 ALSPLNELAYAHALFRQINAPSTNDFNAILRGLAHSSKPTNAVLWYRQMLRGSHR--SDALTCSFALKACARVLALFETLQIHSHVLRHXXXXXXXXXXXXXXVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLG 675 A S ++ A LF + + +NAI+ G H+ P + + +L R DA T S L C +L Q H++VLRH +Y++ G I ++ +VF++M +D+ SWN+LI+ ++ AV+ +K M+ EG P+ T L+AC H G Sbjct: 430 AYSKNGQIEKADLLFERSLRKNLISWNAIISGFYHNGFPFEGLERFSCLLESEVRILPDAYTLSTLLSICVSTSSLMLGSQTHAYVLRHGQFKETLIGNALINMYSQCGTIQNSLEVFNQMSEKDVVSWNSLISAYSRHGEGENAVNTYKTMQDEGKVIPDAATFSAVLSACSHAG 605
BLAST of FC878063 vs. ExPASy Swiss-Prot
Match: PP350_ARATH (Pentatricopeptide repeat-containing protein At4g35130, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H27 PE=2 SV=1) HSP 1 Score: 82.4185 bits (202), Expect = 2.368e-15 Identity = 59/184 (32.07%), Postives = 95/184 (51.63%), Query Frame = 1 Query: 124 PVRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAILRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHXXXXXXXXXXXXXXVYAKVGEIVSAKKVFDEMGVRDIASWNALIAG-LAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHL 672 P ++ + +A S L E A LF ++N +N +++G AV +Y +M+ ++D T F +K+ A + +L E +IH+ V++ +Y K+G A+KVF+EM RDI SWN++I+G LA G+ S + LFK M G FKP+ + + AL AC H+ Sbjct: 65 PALTRALRGFADSRLMEDALQ--LFDEMNKADAFLWNVMIKGFTSCGLYIEAVQFYSRMVFAGVKADTFTYPFVIKSVAGISSLEEGKKIHAMVIKLGFVSDVYVCNSLISLYMKLGCAWDAEKVFEEMPERDIVSWNSMISGYLALGDGFSSLM-LFKEMLKCG-FKPDRFSTMSALGACSHV 244
BLAST of FC878063 vs. ExPASy Swiss-Prot
Match: PP307_ARATH (Pentatricopeptide repeat-containing protein At4g13650 OS=Arabidopsis thaliana GN=PCMP-H42 PE=2 SV=2) HSP 1 Score: 82.4185 bits (202), Expect = 2.368e-15 Identity = 56/202 (27.72%), Postives = 98/202 (48.51%), Query Frame = 1 Query: 70 KQLQAHLTTTGQFQSKLCPVRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAILRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHXXXXXXXXXXXXXXVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLG 675 +Q+ A +G F S L P ++ ++ Y S ++ ++ F Q A +NA++ G S A+ + +M R ++ T A+KA + + + Q+H+ + + +YAK G I A+K F E+ ++ SWNA+I ++ SEA+D F +M V +PN VT++G L+AC H+G Sbjct: 611 QQIHAQACVSG-FSSDL-PFQNALVTLY--SRCGKIEESYLAFEQTEAGDNIAWNALVSGFQQSGNNEEALRVFVRMNREGIDNNNFTFGSAVKAASETANMKQGKQVHAVITKTGYDSETEVCNALISMYAKCGSISDAEKQFLEVSTKNEVSWNAIINAYSKHGFGSEALDSFDQMIHSNV-RPNHVTLVGVLSACSHIG 807 HSP 2 Score: 67.3958 bits (163), Expect = 7.883e-11 Identity = 49/199 (24.62%), Postives = 94/199 (47.24%), Query Frame = 1 Query: 67 IKQLQAHLTTTGQFQSKLCPVRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAILRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHXXXXXXXXXXXXXXVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAAC 663 ++Q+ A + G S + V + +I+ Y+ + +LA +F + + + A++ GL+ + A+ + M S L AC ++ +L Q+H VL+ +Y +G ++SA+ +F M RD ++N LI GL+Q +A++LFKRM ++G+ +P+ T+ + AC Sbjct: 206 VEQIHARILYQGLRDSTV--VCNPLIDLYSRNGFVDLA--RRVFDGLRLKDHSSWVAMISGLSKNECEAEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGNLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRMHLDGL-EPDSNTLASLVVAC 399
BLAST of FC878063 vs. ExPASy Swiss-Prot
Match: PPR15_ARATH (Pentatricopeptide repeat-containing protein At1g06145 OS=Arabidopsis thaliana GN=EMB1444 PE=2 SV=2) HSP 1 Score: 82.0333 bits (201), Expect = 3.093e-15 Identity = 47/170 (27.65%), Postives = 82/170 (48.24%), Query Frame = 1 Query: 166 LNELAYAHALFRQINAPSTNDFNAILRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHXXXXXXXXXXXXXXVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLG 675 L L A +LF Q+ + +++G + + + A+ + +M+ D +T S + ACA + L ++H + L++ +Y+K G + A VF + +++ WN++I GLA A EA+ +F +M+ME V KPN VT + AC H G Sbjct: 234 LGNLEQAESLFNQMPVKDIISWTTMIKGYSQNKRYREAIAVFYKMMEEGIIPDEVTMSTVISACAHLGVLEIGKEVHMYTLQNGFVLDVYIGSALVDMYSKCGSLERALLVFFNLPKKNLFCWNSIIEGLAAHGFAQEALKMFAKMEMESV-KPNAVTFVSVFTACTHAG 402
BLAST of FC878063 vs. ExPASy Swiss-Prot
Match: PP257_ARATH (Pentatricopeptide repeat-containing protein At3g26630, chloroplastic OS=Arabidopsis thaliana GN=PCMP-A6 PE=2 SV=1) HSP 1 Score: 82.0333 bits (201), Expect = 3.093e-15 Identity = 69/243 (28.40%), Postives = 104/243 (42.80%), Query Frame = 1 Query: 46 SHFSHIHIKQLQAHLTTTGQFQSKLCPVRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAILRGLAHSSKPTNAVLWYRQMLRGSHRS--DALTCSFALKACARVLALFETLQIHSHVLRHXXXXXXXXXXXXXXVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQG----------------NLAS---------------EAVDLFKRMKMEGVFKPNEVTVLGALAACGHLG 675 S IH K ++ +LT +L V S E YA +F Q+ +PST +N ++R L+ + KP A+L + M+ SH+S D T F +KAC ++ Q+H ++ +Y K G+ S +KVFD+M R I SW ++ GL N+ S EA LF+RM+++ V KPNE T++ L A LG Sbjct: 34 SQLKQIHTKIIKHNLTNDQLLVRQLISVSSSF---------GETQYASLVFNQLQSPSTFTWNLMIRSLSVNHKPREALLLFILMMI-SHQSQFDKFTFPFVIKACLASSSIRLGTQVHGLAIKAGFFNDVFFQNTLMDLYFKCGKPDSGRKVFDKMPGRSIVSWTTMLYGLVSNSQLDSAEIVFNQMPMRNVVSWTAMITAYVKNRRPDEAFQLFRRMQVDDV-KPNEFTIVNLLQASTQLG 265 HSP 2 Score: 74.7146 bits (182), Expect = 4.938e-13 Identity = 43/175 (24.57%), Postives = 83/175 (47.43%), Query Frame = 1 Query: 151 YALSPLNELAYAHALFRQINAPSTNDFNAILRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHXXXXXXXXXXXXXXVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLG 675 Y L ++L A +F Q+ + + A++ + +P A +R+M + + T L+A ++ +L +H + ++ +Y+K G + A+KVFD M + +A+WN++I L EA+ LF+ M+ E +P+ +T +G L+AC + G Sbjct: 193 YGLVSNSQLDSAEIVFNQMPMRNVVSWTAMITAYVKNRRPDEAFQLFRRMQVDDVKPNEFTIVNLLQASTQLGSLSMGRWVHDYAHKNGFVLDCFLGTALIDMYSKCGSLQDARKVFDVMQGKSLATWNSMITSLGVHGCGEEALSLFEEMEEEASVEPDAITFVGVLSACANTG 367
BLAST of FC878063 vs. ExPASy Swiss-Prot
Match: PP347_ARATH (Pentatricopeptide repeat-containing protein At4g33170 OS=Arabidopsis thaliana GN=PCMP-H53 PE=2 SV=1) HSP 1 Score: 81.2629 bits (199), Expect = 5.276e-15 Identity = 54/183 (29.51%), Postives = 87/183 (47.54%), Query Frame = 1 Query: 127 VRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAILRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHXXXXXXXXXXXXXXVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLG 675 V S I++ Y +++ A F I P + ++ G + + A + QM D T + KA + + AL + QIH++ L+ +YAK G I A +F + + +I +WNA++ GLAQ E + LFK+MK G+ KP++VT +G L+AC H G Sbjct: 554 VSSGILDMYV--KCGDMSAAQFAFDSIPVPDDVAWTTMISGCIENGEEERAFHVFSQMRLMGVLPDEFTIATLAKASSCLTALEQGRQIHANALKLNCTNDPFVGTSLVDMYAKCGSIDDAYCLFKRIEMMNITAWNAMLVGLAQHGEGKETLQLFKQMKSLGI-KPDKVTFIGVLSACSHSG 733
BLAST of FC878063 vs. ExPASy Swiss-Prot
Match: PP333_ARATH (Pentatricopeptide repeat-containing protein At4g21300 OS=Arabidopsis thaliana GN=PCMP-E36 PE=2 SV=1) HSP 1 Score: 81.2629 bits (199), Expect = 5.276e-15 Identity = 49/185 (26.49%), Postives = 89/185 (48.11%), Query Frame = 1 Query: 121 CPVRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAILRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHXXXXXXXXXXXXXXVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLG 675 C + +I+ YA LAY +F +++ +N+++ A S P+ A+ +RQM D ++ S AL ACA + + IH +++H +YAK G + +A VF M ++I SWN++IA +++ LF M + +P+++T L +++C H+G Sbjct: 476 CNIGCAVIDMYAKCGRMNLAYE--IFERLSKRDIVSWNSMITRCAQSDNPSAAIDIFRQMGVSGICYDCVSISAALSACANLPSESFGKAIHGFMIKHSLASDVYSESTLIDMYAKCGNLKAAMNVFKTMKEKNIVSWNSIIAACGNHGKLKDSLCLFHEMVEKSGIRPDQITFLEIISSCCHVG 658 HSP 2 Score: 70.8626 bits (172), Expect = 7.130e-12 Identity = 42/166 (25.30%), Postives = 84/166 (50.60%), Query Frame = 1 Query: 175 LAYAHALFRQINAPSTNDFNAILRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHXXXXXXXXXXXXXXVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHL 672 ++ A +F Q N+ F A++ G H+ +++ +R +++ + +T L +LAL ++H +++ +YAK G + A ++F+ + RDI SWN++I AQ + S A+D+F++M + G+ + V++ AL+AC +L Sbjct: 391 VSMAQNIFSQCNSVDVVVFTAMISGYLHNGLYIDSLEMFRWLVKVKISPNEITLVSILPVIGILLALKLGRELHGFIIKKGFDNRCNIGCAVIDMYAKCGRMNLAYEIFERLSKRDIVSWNSMITRCAQSDNPSAAIDIFRQMGVSGICY-DCVSISAALSACANL 555 The following BLAST results are available for this feature:
BLAST of FC878063 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 154
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >FC878063 ID=FC878063; Name=FC878063; organism=Citrus clementina; type=EST; length=676bpback to top |