FC878063
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC878063 vs. ExPASy Swiss-Prot
Match: PP206_ARATH (Putative pentatricopeptide repeat-containing protein At2g01510 OS=Arabidopsis thaliana GN=PCMP-H36 PE=3 SV=1) HSP 1 Score: 81.2629 bits (199), Expect = 5.276e-15 Identity = 52/183 (28.42%), Postives = 87/183 (47.54%), Query Frame = 1 Query: 127 VRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAILRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHXXXXXXXXXXXXXXVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLG 675 V + +++ YA + E A +F+ + +T + A++ G + + +M + R+D T + LKA A +L Q+H+ ++R +YAK G I A +VF+EM R+ SWNALI+ A A+ F +M +E +P+ V++LG L AC H G Sbjct: 388 VGNSLVDMYAKCEMFE--EAELIFKSLPQRTTVSWTALISGYVQKGLHGAGLKLFTKMRGSNLRADQSTFATVLKASASFASLLLGKQLHAFIIRSGNLENVFSGSGLVDMYAKCGSIKDAVQVFEEMPDRNAVSWNALISAHADNGDGEAAIGAFAKM-IESGLQPDSVSILGVLTACSHCG 567
BLAST of FC878063 vs. ExPASy Swiss-Prot
Match: PP285_ARATH (Pentatricopeptide repeat-containing protein At3g57430, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H81 PE=2 SV=2) HSP 1 Score: 80.8777 bits (198), Expect = 6.890e-15 Identity = 51/194 (26.29%), Postives = 96/194 (49.48%), Query Frame = 1 Query: 127 VRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAILRGLAHSSKPTNAVLWYRQML-----------RGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHXXXXXXXXXXXXXXVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLG 675 V++ +++ Y S L ++ A +F ++ +N ++ G S +A+L +M R S + +++T L +CA + AL + +IH++ +++ +YAK G + ++KVFD++ +++ +WN +I EA+DL + M ++GV KPNEVT + AAC H G Sbjct: 442 VQNTLMDMY--SRLGKIDIAMRIFGKMEDRDLVTWNTMITGYVFSEHHEDALLLLHKMQNLERKVSKGASRVSLKPNSITLMTILPSCAALSALAKGKEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIPQKNVITWNVIIMAYGMHGNGQEAIDLLRMMMVQGV-KPNEVTFISVFAACSHSG 632 HSP 2 Score: 67.781 bits (164), Expect = 6.036e-11 Identity = 51/203 (25.12%), Postives = 88/203 (43.35%), Query Frame = 1 Query: 70 KQLQAHLTTTGQFQSKLCPVRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAILRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHXXXXXXXXXXXXXX-VYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLG 675 KQ+ A+ G+ S + + ++ Y L +LA + L +N +L L + + A+ + R+M+ D T S L AC+ + L ++H++ L++ +Y +++S ++VFD M R I WNA+IAG +Q EA+ LF M+ N T+ G + AC G Sbjct: 222 KQVHAYGLRKGELNSFII---NTLVAMYG--KLGKLASSKVLLGSFGGRDLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSG 419
BLAST of FC878063 vs. ExPASy Swiss-Prot
Match: PP223_ARATH (Putative pentatricopeptide repeat-containing protein At3g11460 OS=Arabidopsis thaliana GN=PCMP-H52 PE=3 SV=1) HSP 1 Score: 80.8777 bits (198), Expect = 6.890e-15 Identity = 55/204 (26.96%), Postives = 99/204 (48.53%), Query Frame = 1 Query: 70 KQLQAHLTTTGQFQSKLCPVRSKIIEFYALSPLNELAYAHALFRQINAPSTND--FNAILRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHXXXXXXXXXXXXXXVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLG 675 +QL H+T G V + +I Y L +A A +F + S +NA++ G +SK T+A +R+M D++T + C L+ +H ++ +Y K G + + +++FDEM V+ + +WNA+I+G +Q LA + ++L+++MK GV P+ T++ L++C HLG Sbjct: 73 QQLHCHVTKGGCETEPF--VLTALISMYCKCGL--VADARKVFEENPQSSQLSVCYNALISGYTANSKVTDAAYMFRRMKETGVSVDSVTMLGLVPLCTVPEYLWLGRSLHGQCVKGGLDSEVAVLNSFITMYMKCGSVEAGRRLFDEMPVKGLITWNAVISGYSQNGLAYDVLELYEQMKSSGVC-PDPFTLVSVLSSCAHLG 271 HSP 2 Score: 75.0998 bits (183), Expect = 3.781e-13 Identity = 49/155 (31.61%), Postives = 76/155 (49.03%), Query Frame = 1 Query: 205 INAPSTNDFNAILRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHXXXXXXXXXXXXXXVYAKVGEIVSAKKVFDEMGVRDIAS--WNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAAC 663 + A ++ +N LR LA+ S + ++ YR MLR DA + F LK+CA + Q+H HV + +Y K G + A+KVF+E S +NALI+G + ++A +F+RMK GV + VT+LG + C Sbjct: 13 VAAVASTPWNVRLRELAYQSLFSESISLYRSMLRSGSSPDAFSFPFILKSCASLSLPVSGQQLHCHVTKGGCETEPFVLTALISMYCKCGLVADARKVFEENPQSSQLSVCYNALISGYTANSKVTDAAYMFRRMKETGV-SVDSVTMLGLVPLC 166
BLAST of FC878063 vs. ExPASy Swiss-Prot
Match: PP207_ARATH (Pentatricopeptide repeat-containing protein At3g02330 OS=Arabidopsis thaliana GN=PCMP-E90 PE=2 SV=2) HSP 1 Score: 80.8777 bits (198), Expect = 6.890e-15 Identity = 43/149 (28.86%), Postives = 75/149 (50.34%), Query Frame = 1 Query: 229 FNAILRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHXXXXXXXXXXXXXXVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLG 675 +N+I+ G + +A + + +M+ D T + L CA + + QIH+ V++ +Y+K G++ ++ +F++ RD +WNA+I G A EA+ LF+RM +E + KPN VT + L AC H+G Sbjct: 571 WNSIISGYVMKEQSEDAQMLFTRMMEMGITPDKFTYATVLDTCANLASAGLGKQIHAQVIKKELQSDVYICSTLVDMYSKCGDLHDSRLMFEKSLRRDFVTWNAMICGYAHHGKGEEAIQLFERMILENI-KPNHVTFISILRACAHMG 718 HSP 2 Score: 72.4034 bits (176), Expect = 2.451e-12 Identity = 53/185 (28.65%), Postives = 82/185 (44.32%), Query Frame = 1 Query: 127 VRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAILRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHXXXXXXXXXXXXXXVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAAC--GHLG 675 VR+ ++ YA + + A LF + +NA++ G + A+L + +++ D ++ S +ACA V L E LQI+ ++ +Y K + A +VFDEM RD SWNA+IA Q E + LF M + +P+E T L AC G LG Sbjct: 318 VRTATLDMYA--KCDNMQDAQILFDNSENLNRQSYNAMITGYSQEEHGFKALLLFHRLMSSGLGFDEISLSGVFRACALVKGLSEGLQIYGLAIKSSLSLDVCVANAAIDMYGKCQALAEAFRVFDEMRRRDAVSWNAIIAAHEQNGKGYETLFLFVSM-LRSRIEPDEFTFGSILKACTGGSLG 499
BLAST of FC878063 vs. ExPASy Swiss-Prot
Match: PP305_ARATH (Pentatricopeptide repeat-containing protein At4g08210 OS=Arabidopsis thaliana GN=PCMP-E100 PE=2 SV=1) HSP 1 Score: 80.4925 bits (197), Expect = 8.999e-15 Identity = 50/164 (30.49%), Postives = 77/164 (46.95%), Query Frame = 1 Query: 184 AHALFRQINAPSTNDFNAILRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHXXXXXXXXXXXXXXVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLG 675 AH LF ++ F+ ++RG S + A +R++++ +D S LK C+ + +L QIH ++ +Y K GEI + +FD M RD+ SW +I G Q EA F +M G+ +PN+VT LG L+AC H G Sbjct: 396 AHKLFHRLPNKDIIAFSGLIRGCVKSGFNSLAFYLFRELIKLGLDADQFIVSNILKVCSSLASLGWGKQIHGLCIKKGYESEPVTATALVDMYVKCGEIDNGVVLFDGMLERDVVSWTGIIVGFGQNGRVEEAFRYFHKMINIGI-EPNKVTFLGLLSACRHSG 558
BLAST of FC878063 vs. ExPASy Swiss-Prot
Match: PP272_ARATH (Pentatricopeptide repeat-containing protein At3g49170, chloroplastic OS=Arabidopsis thaliana GN=EMB2261 PE=2 SV=1) HSP 1 Score: 80.4925 bits (197), Expect = 8.999e-15 Identity = 58/199 (29.15%), Postives = 90/199 (45.23%), Query Frame = 1 Query: 88 LTTTGQFQSKLCPVRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAILRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHXXXXXXXXXXXXXXVYAKV---GEIVSAKKVFDEMGVRDIASWNALIAGLAQG-NLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHL 672 L TG F+S +C V +I+ + N A+ +F +++ + + ++ P A+ ++ M+ SD T S ACA + L Q+HS +R +YAK G + +KVFD M + SW ALI G + NLA+EA++LF M +G +PN T A ACG+L Sbjct: 192 LMKTGHFESDVC-VGCSLIDMFVKGE-NSFENAYKVFDKMSELNVVTWTLMITRCMQMGFPREAIRFFLDMVLSGFESDKFTLSSVFSACAELENLSLGKQLHSWAIRSGLVDDVECSLVD--MYAKCSADGSVDDCRKVFDRMEDHSVMSWTALITGYMKNCNLATEAINLFSEMITQGHVEPNHFTFSSAFKACGNL 386 HSP 2 Score: 73.559 bits (179), Expect = 1.100e-12 Identity = 50/183 (27.32%), Postives = 84/183 (45.90%), Query Frame = 1 Query: 127 VRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAILRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHXXXXXXXXXXXXXXVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLG 675 V + +I + S + + A F ++ + +N L G + A ++ A T + L A V ++ + QIHS V++ +Y+K G I +A +VF+ M R++ SW ++I G A+ A ++ F +M EGV KPNEVT + L+AC H+G Sbjct: 410 VANSVISMFVKS--DRMEDAQRAFESLSEKNLVSYNTFLDGTCRNLNFEQAFKLLSEITERELGVSAFTFASLLSGVANVGSIRKGEQIHSQVVKLGLSCNQPVCNALISMYSKCGSIDTASRVFNFMENRNVISWTSMITGFAKHGFAIRVLETFNQMIEEGV-KPNEVTYVAILSACSHVG 589
BLAST of FC878063 vs. ExPASy Swiss-Prot
Match: PP259_ARATH (Putative pentatricopeptide repeat-containing protein At3g28640 OS=Arabidopsis thaliana GN=PCMP-E79 PE=3 SV=1) HSP 1 Score: 80.4925 bits (197), Expect = 8.999e-15 Identity = 60/203 (29.56%), Postives = 95/203 (46.80%), Query Frame = 1 Query: 70 KQLQAHLTTTGQFQSKLCPVRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAILRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHXXXXXXXXXXXXXX-VYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLG 675 KQ+ + G F S V++ ++ Y L L A +F +I P ++ ++ G + + +R+ML D + + AL ACA+V AL + IH V + +YAK G I +A +VF ++ R++ SW ALI G A A +A+ +R++ E KP+ V +LG LAAC H G Sbjct: 136 KQIHCWVVKNGVFLSD-SHVQTGVLRIYVEDKL--LLDARKVFDEIPQPDVVKWDVLMNGYVRCGLGSEGLEVFREMLVKGLEPDEFSVTTALTACAQVGALAQGKWIHEFVKKKSWIESDVFVGTALVDMYAKCGCIETAVEVFKKLTRRNVFSWAALIGGYAAYGYAKKAMTCLERLEREDGIKPDSVVLLGVLAACAHGG 335
BLAST of FC878063 vs. ExPASy Swiss-Prot
Match: PP185_ARATH (Pentatricopeptide repeat-containing protein At2g35030, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E15 PE=2 SV=1) HSP 1 Score: 80.4925 bits (197), Expect = 8.999e-15 Identity = 52/171 (30.41%), Postives = 87/171 (50.88%), Query Frame = 1 Query: 172 ELAYAHALFRQINAPSTNDFNAILRGLAHSSKPTNAVLWYRQMLR-GSHRSDALTCSFALKACARVLALFETLQIHSHVLRHXXXXXXXXXXXXXXVYAKVGEIVSAKKVFDEMGV--RDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLG 675 E+ A LF ++ + + ++ G + + A+ + +MLR GS + + T L AC+ + L E QIH + + +Y+K GE+++A+K+FD V RD+ SWN++IA A EA++++ +M+ G FKP+ VT L L AC H G Sbjct: 279 EMNKACGLFDRMPEKNVISWTTMITGYVENKENEEALNVFSKMLRDGSVKPNVGTYVSILSACSDLAGLVEGQQIHQLISKSVHQKNEIVTSALLNMYSKSGELIAARKMFDNGLVCQRDLISWNSMIAVYAHHGHGKEAIEMYNQMRKHG-FKPSAVTYLNLLFACSHAG 448
BLAST of FC878063 vs. ExPASy Swiss-Prot
Match: PPR14_ARATH (Pentatricopeptide repeat-containing protein At1g06140, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E61 PE=2 SV=1) HSP 1 Score: 80.1073 bits (196), Expect = 1.175e-14 Identity = 53/183 (28.96%), Postives = 87/183 (47.54%), Query Frame = 1 Query: 127 VRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAILRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHXXXXXXXXXXXXXXVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLG 675 +++ II+ Y L L A LF + + ++ G A + A +RQMLR S + T + L +C+ + +L +H +++R+ +YA+ G I A+ VFD M R++ SW+++I L EA+D F +MK + V PN VT + L+AC H G Sbjct: 248 LQASIIDMYVKCRL--LDNARKLFETSVDRNVVMWTTLISGFAKCERAVEAFDLFRQMLRESILPNQCTLAAILVSCSSLGSLRHGKSVHGYMIRNGIEMDAVNFTSFIDMYARCGNIQMARTVFDMMPERNVISWSSMINAFGINGLFEEALDCFHKMKSQNVV-PNSVTFVSLLSACSHSG 427
BLAST of FC878063 vs. ExPASy Swiss-Prot
Match: PP435_ARATH (Putative pentatricopeptide repeat-containing protein At5g59200, chloroplastic OS=Arabidopsis thaliana GN=PCMP-E41 PE=3 SV=1) HSP 1 Score: 80.1073 bits (196), Expect = 1.175e-14 Identity = 56/203 (27.59%), Postives = 90/203 (44.33%), Query Frame = 1 Query: 160 SPLNELAYAHALFRQINAPSTNDFNAILRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHXXXXXXXXXXXXXXVYAKVGEIVSAKKVFDEM-------------------------------GVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLG 675 S L+ + YA+ +F ++ P+ + A++ G S + + V Y +M+ S D + LKAC L +IH+ VL+ +Y K GE+V+AKK+FDEM ++D W A+I GL + ++A++LF+ M+ME V NE T + L+AC LG Sbjct: 72 STLDSVDYAYDVFSYVSNPNVYLYTAMIDGFVSSGRSADGVSLYHRMIHNSVLPDNYVITSVLKACD----LKVCREIHAQVLKLGFGSSRSVGLKMMEIYGKSGELVNAKKMFDEMPDRDHVAATVMINCYSECGFIKEALELFQDVKIKDTVCWTAMIDGLVRNKEMNKALELFREMQMENV-SANEFTAVCVLSACSDLG 269 HSP 2 Score: 76.6406 bits (187), Expect = 1.299e-13 Identity = 47/161 (29.19%), Postives = 82/161 (50.93%), Query Frame = 1 Query: 193 LFRQINAPSTNDFNAILRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHXXXXXXXXXXXXXXVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLG 675 LF+ + T + A++ GL + + A+ +R+M + ++ T L AC+ + AL +HS V +Y++ G+I A++VF M +D+ S+N +I+GLA + EA++ F+ M G F+PN+VT++ L AC H G Sbjct: 211 LFQDVKIKDTVCWTAMIDGLVRNKEMNKALELFREMQMENVSANEFTAVCVLSACSDLGALELGRWVHSFVENQRMELSNFVGNALINMYSRCGDINEARRVFRVMRDKDVISYNTMISGLAMHGASVEAINEFRDMVNRG-FRPNQVTLVALLNACSHGG 370 The following BLAST results are available for this feature:
BLAST of FC878063 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 154
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >FC878063 ID=FC878063; Name=FC878063; organism=Citrus clementina; type=EST; length=676bpback to top |