FC878063

Overview
NameFC878063
Unique NameFC878063
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length676
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC878063 vs. ExPASy Swiss-Prot
Match: PP258_ARATH (Pentatricopeptide repeat-containing protein At3g26782, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H34 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.175e-14
Identity = 55/184 (29.89%), Postives = 89/184 (48.37%), Query Frame = 1
Query:  127 VRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAILRGLAHSSKPTNAVLWYRQMLRGSHRS-DALTCSFALKACARVLALFETLQIHSHVLRHXXXXXXXXXXXXXXVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLG 675
            V + +++ YA      +A A  +F QI       +N+I+   A S     A   +R++++    + +A+T S  L A +   AL     IH  V+R               +Y K G + +A+K FD M  +++ SW A+IAG      A++A++LF  M   GV +PN +T +  LAAC H G
Sbjct:  220 VGNTLLDAYAKGGEGGVAVARKIFDQIVDKDRVSYNSIMSVYAQSGMSNEAFEVFRRLVKNKVVTFNAITLSTVLLAVSHSGALRIGKCIHDQVIRMGLEDDVIVGTSIIDMYCKCGRVETARKAFDRMKNKNVRSWTAMIAGYGMHGHAAKALELFPAMIDSGV-RPNYITFVSVLAACSHAG 402          
BLAST of FC878063 vs. ExPASy Swiss-Prot
Match: PPR62_ARATH (Pentatricopeptide repeat-containing protein At1g28690, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E34 PE=2 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 1.535e-14
Identity = 49/165 (29.70%), Postives = 81/165 (49.09%), Query Frame = 1
Query:  184 AHALFRQINAPSTNDFNAILRGLAHSSKPTN-AVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHXXXXXXXXXXXXXXVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLG 675
            A  +F          +NA++ G + S +    +V  Y  M R     +  T +  + AC+ + +     Q+H+ +++               +YAK G I  A++VFD+M  +++ SW ++I G  +     EA++LF RMK E   +PN VT LGAL+AC H G
Sbjct:  225 AEEIFNTTKVKDIVVYNAMVEGFSRSGETAKRSVDMYISMQRAGFHPNISTFASVIGACSVLTSHEVGQQVHAQIMKSGVYTHIKMGSSLLDMYAKCGGINDARRVFDQMQEKNVFSWTSMIDGYGKNGNPEEALELFTRMK-EFRIEPNYVTFLGALSACSHSG 388          
BLAST of FC878063 vs. ExPASy Swiss-Prot
Match: PP373_ARATH (Putative pentatricopeptide repeat-containing protein At5g09950 OS=Arabidopsis thaliana GN=PCMP-H35 PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.535e-14
Identity = 46/151 (30.46%), Postives = 79/151 (52.32%), Query Frame = 1
Query:  229 FNAILRGLAHSSKPTNAV--LWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHXXXXXXXXXXXXXXVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLG 675
            +N+++ G  H+     A+  +W+  ML+   R D+   +  L A A V  L   +++H+  +R               +Y+K G +  A + F+ M VR+  SWN++I+G A+     EA+ LF+ MK++G   P+ VT +G L+AC H G
Sbjct:  587 WNSMISGYIHNELLAKALDLVWF--MLQTGQRLDSFMYATVLSAFASVATLERGMEVHACSVRACLESDVVVGSALVDMYSKCGRLDYALRFFNTMPVRNSYSWNSMISGYARHGQGEEALKLFETMKLDGQTPPDHVTFVGVLSACSHAG 735          
BLAST of FC878063 vs. ExPASy Swiss-Prot
Match: PP168_ARATH (Pentatricopeptide repeat-containing protein At2g22070 OS=Arabidopsis thaliana GN=PCMP-H41 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.535e-14
Identity = 49/171 (28.65%), Postives = 81/171 (47.37%), Query Frame = 1
Query:  166 LNELAYAHALFRQINAPSTNDFNAILRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHXXXXXXXXXXXXXXVYAKVGEIVSAKKVFDEMGV-RDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLG 675
            L ++  A  +F  +       + A++ G         A+  +R M+ G  R ++ T +  L   + + +L    QIH   ++               +YAK G I SA + FD +   RD  SW ++I  LAQ   A EA++LF+ M MEG+ +P+ +T +G  +AC H G
Sbjct:  360 LGDMNQAKNIFVSLKDRDVVAWTAMIVGYEQHGSYGEAINLFRSMVGGGQRPNSYTLAAMLSVASSLASLSHGKQIHGSAVKSGEIYSVSVSNALITMYAKAGNITSASRAFDLIRCERDTVSWTSMIIALAQHGHAEEALELFETMLMEGL-RPDHITYVGVFSACTHAG 529          
BLAST of FC878063 vs. ExPASy Swiss-Prot
Match: PPR25_ARATH (Pentatricopeptide repeat-containing protein At1g09410 OS=Arabidopsis thaliana GN=PCMP-H18 PE=2 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 2.005e-14
Identity = 47/173 (27.17%), Postives = 79/173 (45.66%), Query Frame = 1
Query:  157 LSPLNELAYAHALFRQINAPSTNDFNAILRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHXXXXXXXXXXXXXXVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLG 675
            L    E+A A  +F  +   +   +  +++    +     A+  +  M +   R    T    L  CA + +L    Q+H+ ++R               +Y K GE+V +K +FD    +DI  WN++I+G A   L  EA+ +F  M + G  KPNEVT +  L+AC + G
Sbjct:  275 LGQKGEIAKARRVFDSMKERNDASWQTVIKIHERNGFELEALDLFILMQKQGVRPTFPTLISILSVCASLASLHHGKQVHAQLVRCQFDVDVYVASVLMTMYIKCGELVKSKLIFDRFPSKDIIMWNSIISGYASHGLGEEALKVFCEMPLSGSTKPNEVTFVATLSACSYAG 447          
BLAST of FC878063 vs. ExPASy Swiss-Prot
Match: PP429_ARATH (Putative pentatricopeptide repeat-containing protein At5g52630 OS=Arabidopsis thaliana GN=PCMP-H52 PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.005e-14
Identity = 49/183 (26.78%), Postives = 89/183 (48.63%), Query Frame = 1
Query:  127 VRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAILRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHXXXXXXXXXXXXXXVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLG 675
            V S +++ YA     E+ YA  +F ++   +   ++ ++ G A   +   A+  +++ L  +   +  + S  +  CA    L    QIH   ++               +Y+K G    A +VF+E+ V+++  WNA++   AQ +   + ++LFKRMK+ G+ KPN +T L  L AC H G
Sbjct:  153 VGSSLVDMYA--KCGEIVYARKMFDEMPQRNVVTWSGMMYGYAQMGENEEALWLFKEALFENLAVNDYSFSSVISVCANSTLLELGRQIHGLSIKSSFDSSSFVGSSLVSLYSKCGVPEGAYQVFNEVPVKNLGIWNAMLKAYAQHSHTQKVIELFKRMKLSGM-KPNFITFLNVLNACSHAG 332          
BLAST of FC878063 vs. ExPASy Swiss-Prot
Match: PP385_ARATH (Pentatricopeptide repeat-containing protein At5g15300 OS=Arabidopsis thaliana GN=PCMP-E40 PE=2 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 2.005e-14
Identity = 51/179 (28.49%), Postives = 81/179 (45.25%), Query Frame = 1
Query:   67 IKQLQAHLTTTGQFQSKLCPVRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAILRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHXXXXXXXXXXXXXXVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRM 603
            +KQ+ A +   G   +    V  ++I   +LS    L YAH LF +I  P  +  N +LRG A S KP   V  Y +M +     D  T +F LKAC+++         H  V+RH               +A  G++  A ++FD+       +W+++ +G A+     EA+ LF  M
Sbjct:   28 LKQIHASMVVNGLMSN--LSVVGELIYSASLSVPGALKYAHKLFDEIPKPDVSICNHVLRGSAQSMKPEKTVSLYTEMEKRGVSPDRYTFTFVLKACSKLEWRSNGFAFHGKVVRHGFVLNEYVKNALILFHANCGDLGIASELFDDSAKAHKVAWSSMTSGYAKRGKIDEAMRLFDEM 204          

HSP 2 Score: 71.2478 bits (173), Expect = 5.459e-12
Identity = 50/173 (28.90%), Postives = 82/173 (47.40%), Query Frame = 1
Query:  172 ELAYAHALFRQINAPSTNDFNAILRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLR-----HXXXXXXXXXXXXXXVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLG 675
            E+  A  LF +        +NA++ G  +   P  A+  +++M       D +T    L ACA +  L    ++H ++L                     +YAK G I  A +VF  +  RD+++WN LI GLA  + A  ++++F+ M+   V+ PNEVT +G + AC H G
Sbjct:  224 EMDSARELFDRFTEKDVVTWNAMISGYVNCGYPKEALGIFKEMRDAGEHPDVVTILSLLSACAVLGDLETGKRLHIYILETASVSSSIYVGTPIWNALIDMYAKCGSIDRAIEVFRGVKDRDLSTWNTLIVGLALHH-AEGSIEMFEEMQRLKVW-PNEVTFIGVILACSHSG 394          
BLAST of FC878063 vs. ExPASy Swiss-Prot
Match: PP364_ARATH (Pentatricopeptide repeat-containing protein At5g04780 OS=Arabidopsis thaliana GN=PCMP-H16 PE=2 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 2.005e-14
Identity = 48/183 (26.23%), Postives = 91/183 (49.73%), Query Frame = 1
Query:  127 VRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAILRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHXXXXXXXXXXXXXXVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLG 675
            V + +++ YA   +  +  A  +F  +   S+  +++++ G   +     A+L YR+  R S   +  T S  + AC+ + AL E  Q+H+ + +               +YAK G +  +  +F E+  +++  WN +I+G A+     E + LF++M+ +G+  PNEVT    L+ CGH G
Sbjct:  199 VGTALLDLYAKCGM--IKDAVQVFESMQDKSSVTWSSMVAGYVQNKNYEEALLLYRRAQRMSLEQNQFTLSSVICACSNLAALIEGKQMHAVICKSGFGSNVFVASSAVDMYAKCGSLRESYIIFSEVQEKNLELWNTIISGFAKHARPKEVMILFEKMQQDGM-HPNEVTFSSLLSVCGHTG 378          
BLAST of FC878063 vs. ExPASy Swiss-Prot
Match: PP337_ARATH (Pentatricopeptide repeat-containing protein At4g25270, chloroplastic OS=Arabidopsis thaliana GN=PCMP-E53 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.005e-14
Identity = 50/179 (27.93%), Postives = 89/179 (49.72%), Query Frame = 1
Query:  127 VRSKIIEFYALSPLNELAYAHALFRQINAPSTNDF--NAILRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHXXXXXXXXXXXXXXVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALA 657
            + SK++  YA     E+A  H +F +++   ++ F  N+++ G A   +  +A+  Y QM     + D  T    LKAC  + ++     IH  +++               +YAK G+IV A+ VFD +  +D  SWN+++ G     L  EA+D+F+ M   G+ +P++V +   LA
Sbjct:  129 ISSKLVRLYASCGYAEVA--HEVFDRMSKRDSSPFAWNSLISGYAELGQYEDAMALYFQMAEDGVKPDRFTFPRVLKACGGIGSVQIGEAIHRDLVKEGFGYDVYVLNALVVMYAKCGDIVKARNVFDMIPHKDYVSWNSMLTGYLHHGLLHEALDIFRLMVQNGI-EPDKVAISSVLA 304          
BLAST of FC878063 vs. ExPASy Swiss-Prot
Match: PP355_ARATH (Pentatricopeptide repeat-containing protein At4g38010 OS=Arabidopsis thaliana GN=PCMP-E45 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.420e-14
Identity = 57/203 (28.08%), Postives = 87/203 (42.86%), Query Frame = 1
Query:   70 KQLQAHLTTTGQFQSKLCPVRSKIIEFYALSPLNELAYAHALFRQINAP-STNDFNAILRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHXXXXXXXXXXXXXXVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLG 675
            KQ+Q  L T    +  L  + +K++ F   S  +  +Y+  +   I +  S+  +N +L   A   KP   +  Y+  +      D  T     KAC +   + E  QIH  V +                Y   GE  +A KVF EM VRD+ SW  +I G  +  L  EA+D F +M +E    PN  T +  L + G +G
Sbjct:   23 KQIQTQLITRDLLRDDL--IINKVVTFLGKSA-DFASYSSVILHSIRSVLSSFSYNTLLSSYAVCDKPRVTIFAYKTFVSNGFSPDMFTFPPVFKACGKFSGIREGKQIHGIVTKMGFYDDIYVQNSLVHFYGVCGESRNACKVFGEMPVRDVVSWTGIITGFTRTGLYKEALDTFSKMDVE----PNLATYVCVLVSSGRVG 218          

HSP 2 Score: 73.1738 bits (178), Expect = 1.437e-12
Identity = 49/169 (28.99%), Postives = 82/169 (48.52%), Query Frame = 1
Query:  172 ELAYAHALFRQINAPSTNDFNAILRGLAHSSKPTNAVLWYRQMLRGSH-RSDALTCSFALKACARVLALFETLQIHSHVLRHXXXXXXXXXXXXXXVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLG 675
            +L+ A  +F ++       +N+++ GL H  +   A+  +  M   S  + D    +  L ACA + A+     +H ++L                +YAK G I +A ++F+ +  +++ +WNAL+ GLA      E++  F+ M   G FKPN VT L AL AC H G
Sbjct:  254 QLSDAMRVFGELEKKDKVSWNSMISGLVHCERSKEAIDLFSLMQTSSGIKPDGHILTSVLSACASLGAVDHGRWVHEYILTAGIKWDTHIGTAIVDMYAKCGYIETALEIFNGIRSKNVFTWNALLGGLAIHGHGLESLRYFEEMVKLG-FKPNLVTFLAALNACCHTG 421          
The following BLAST results are available for this feature:
BLAST of FC878063 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 154
Match NameE-valueIdentityDescription
PP258_ARATH1.175e-1429.89Pentatricopeptide repeat-containing protein At3g26... [more]
PPR62_ARATH1.535e-1429.70Pentatricopeptide repeat-containing protein At1g28... [more]
PP373_ARATH1.535e-1430.46Putative pentatricopeptide repeat-containing prote... [more]
PP168_ARATH1.535e-1428.65Pentatricopeptide repeat-containing protein At2g22... [more]
PPR25_ARATH2.005e-1427.17Pentatricopeptide repeat-containing protein At1g09... [more]
PP429_ARATH2.005e-1426.78Putative pentatricopeptide repeat-containing prote... [more]
PP385_ARATH2.005e-1428.49Pentatricopeptide repeat-containing protein At5g15... [more]
PP364_ARATH2.005e-1426.23Pentatricopeptide repeat-containing protein At5g04... [more]
PP337_ARATH2.005e-1427.93Pentatricopeptide repeat-containing protein At4g25... [more]
PP355_ARATH3.420e-1428.08Pentatricopeptide repeat-containing protein At4g38... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAQ12YE14RM1 IVIA1 Citrus clementina cDNA clone KN0AAQ12YE14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878063 ID=FC878063; Name=FC878063; organism=Citrus clementina; type=EST; length=676bp
AATGCGCTAATCTCAACGCACTGTTACAAAAATGCAGTAGTAATGTCCCA
TTTCTCTCACATTCACATAAAGCAACTACAAGCTCACCTTACTACCACCG
GCCAATTCCAATCCAAATTGTGCCCCGTTCGATCCAAAATCATCGAATTT
TACGCGCTTTCTCCTCTCAACGAGCTCGCTTACGCACACGCTTTGTTCCG
CCAAATCAACGCGCCTTCCACCAACGACTTTAACGCTATCCTCCGAGGCC
TCGCCCACTCTTCGAAACCCACGAACGCCGTCCTATGGTACCGCCAAATG
TTACGCGGGTCCCACAGGTCCGACGCGCTCACGTGCTCGTTTGCTCTCAA
AGCATGCGCGCGTGTCCTGGCTTTGTTTGAGACTTTACAGATTCATTCGC
ACGTTTTGCGTCATGGGTTCTTGGCTGATGCGTTGTTGGGTACTACTTTG
TTGGATGTCTATGCGAAAGTTGGCGAGATTGTAAGTGCTAAGAAGGTGTT
TGATGAAATGGGTGTGAGAGACATTGCGTCGTGGAATGCGTTGATTGCTG
GGTTGGCTCAGGGGAATTTGGCGAGTGAAGCAGTTGATTTGTTTAAGAGG
ATGAAAATGGAGGGTGTTTTTAAGCCTAATGAGGTTACGGTTCTGGGAGC
TTTGGCGGCGTGTGGTCATTTGGGTG
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