FC878063
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC878063 vs. ExPASy Swiss-Prot
Match: PP258_ARATH (Pentatricopeptide repeat-containing protein At3g26782, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H34 PE=2 SV=1) HSP 1 Score: 80.1073 bits (196), Expect = 1.175e-14 Identity = 55/184 (29.89%), Postives = 89/184 (48.37%), Query Frame = 1 Query: 127 VRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAILRGLAHSSKPTNAVLWYRQMLRGSHRS-DALTCSFALKACARVLALFETLQIHSHVLRHXXXXXXXXXXXXXXVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLG 675 V + +++ YA +A A +F QI +N+I+ A S A +R++++ + +A+T S L A + AL IH V+R +Y K G + +A+K FD M +++ SW A+IAG A++A++LF M GV +PN +T + LAAC H G Sbjct: 220 VGNTLLDAYAKGGEGGVAVARKIFDQIVDKDRVSYNSIMSVYAQSGMSNEAFEVFRRLVKNKVVTFNAITLSTVLLAVSHSGALRIGKCIHDQVIRMGLEDDVIVGTSIIDMYCKCGRVETARKAFDRMKNKNVRSWTAMIAGYGMHGHAAKALELFPAMIDSGV-RPNYITFVSVLAACSHAG 402
BLAST of FC878063 vs. ExPASy Swiss-Prot
Match: PPR62_ARATH (Pentatricopeptide repeat-containing protein At1g28690, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E34 PE=2 SV=2) HSP 1 Score: 79.7221 bits (195), Expect = 1.535e-14 Identity = 49/165 (29.70%), Postives = 81/165 (49.09%), Query Frame = 1 Query: 184 AHALFRQINAPSTNDFNAILRGLAHSSKPTN-AVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHXXXXXXXXXXXXXXVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLG 675 A +F +NA++ G + S + +V Y M R + T + + AC+ + + Q+H+ +++ +YAK G I A++VFD+M +++ SW ++I G + EA++LF RMK E +PN VT LGAL+AC H G Sbjct: 225 AEEIFNTTKVKDIVVYNAMVEGFSRSGETAKRSVDMYISMQRAGFHPNISTFASVIGACSVLTSHEVGQQVHAQIMKSGVYTHIKMGSSLLDMYAKCGGINDARRVFDQMQEKNVFSWTSMIDGYGKNGNPEEALELFTRMK-EFRIEPNYVTFLGALSACSHSG 388
BLAST of FC878063 vs. ExPASy Swiss-Prot
Match: PP373_ARATH (Putative pentatricopeptide repeat-containing protein At5g09950 OS=Arabidopsis thaliana GN=PCMP-H35 PE=3 SV=1) HSP 1 Score: 79.7221 bits (195), Expect = 1.535e-14 Identity = 46/151 (30.46%), Postives = 79/151 (52.32%), Query Frame = 1 Query: 229 FNAILRGLAHSSKPTNAV--LWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHXXXXXXXXXXXXXXVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLG 675 +N+++ G H+ A+ +W+ ML+ R D+ + L A A V L +++H+ +R +Y+K G + A + F+ M VR+ SWN++I+G A+ EA+ LF+ MK++G P+ VT +G L+AC H G Sbjct: 587 WNSMISGYIHNELLAKALDLVWF--MLQTGQRLDSFMYATVLSAFASVATLERGMEVHACSVRACLESDVVVGSALVDMYSKCGRLDYALRFFNTMPVRNSYSWNSMISGYARHGQGEEALKLFETMKLDGQTPPDHVTFVGVLSACSHAG 735
BLAST of FC878063 vs. ExPASy Swiss-Prot
Match: PP168_ARATH (Pentatricopeptide repeat-containing protein At2g22070 OS=Arabidopsis thaliana GN=PCMP-H41 PE=2 SV=1) HSP 1 Score: 79.7221 bits (195), Expect = 1.535e-14 Identity = 49/171 (28.65%), Postives = 81/171 (47.37%), Query Frame = 1 Query: 166 LNELAYAHALFRQINAPSTNDFNAILRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHXXXXXXXXXXXXXXVYAKVGEIVSAKKVFDEMGV-RDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLG 675 L ++ A +F + + A++ G A+ +R M+ G R ++ T + L + + +L QIH ++ +YAK G I SA + FD + RD SW ++I LAQ A EA++LF+ M MEG+ +P+ +T +G +AC H G Sbjct: 360 LGDMNQAKNIFVSLKDRDVVAWTAMIVGYEQHGSYGEAINLFRSMVGGGQRPNSYTLAAMLSVASSLASLSHGKQIHGSAVKSGEIYSVSVSNALITMYAKAGNITSASRAFDLIRCERDTVSWTSMIIALAQHGHAEEALELFETMLMEGL-RPDHITYVGVFSACTHAG 529
BLAST of FC878063 vs. ExPASy Swiss-Prot
Match: PPR25_ARATH (Pentatricopeptide repeat-containing protein At1g09410 OS=Arabidopsis thaliana GN=PCMP-H18 PE=2 SV=2) HSP 1 Score: 79.337 bits (194), Expect = 2.005e-14 Identity = 47/173 (27.17%), Postives = 79/173 (45.66%), Query Frame = 1 Query: 157 LSPLNELAYAHALFRQINAPSTNDFNAILRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHXXXXXXXXXXXXXXVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLG 675 L E+A A +F + + + +++ + A+ + M + R T L CA + +L Q+H+ ++R +Y K GE+V +K +FD +DI WN++I+G A L EA+ +F M + G KPNEVT + L+AC + G Sbjct: 275 LGQKGEIAKARRVFDSMKERNDASWQTVIKIHERNGFELEALDLFILMQKQGVRPTFPTLISILSVCASLASLHHGKQVHAQLVRCQFDVDVYVASVLMTMYIKCGELVKSKLIFDRFPSKDIIMWNSIISGYASHGLGEEALKVFCEMPLSGSTKPNEVTFVATLSACSYAG 447
BLAST of FC878063 vs. ExPASy Swiss-Prot
Match: PP429_ARATH (Putative pentatricopeptide repeat-containing protein At5g52630 OS=Arabidopsis thaliana GN=PCMP-H52 PE=3 SV=1) HSP 1 Score: 79.337 bits (194), Expect = 2.005e-14 Identity = 49/183 (26.78%), Postives = 89/183 (48.63%), Query Frame = 1 Query: 127 VRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAILRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHXXXXXXXXXXXXXXVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLG 675 V S +++ YA E+ YA +F ++ + ++ ++ G A + A+ +++ L + + + S + CA L QIH ++ +Y+K G A +VF+E+ V+++ WNA++ AQ + + ++LFKRMK+ G+ KPN +T L L AC H G Sbjct: 153 VGSSLVDMYA--KCGEIVYARKMFDEMPQRNVVTWSGMMYGYAQMGENEEALWLFKEALFENLAVNDYSFSSVISVCANSTLLELGRQIHGLSIKSSFDSSSFVGSSLVSLYSKCGVPEGAYQVFNEVPVKNLGIWNAMLKAYAQHSHTQKVIELFKRMKLSGM-KPNFITFLNVLNACSHAG 332
BLAST of FC878063 vs. ExPASy Swiss-Prot
Match: PP385_ARATH (Pentatricopeptide repeat-containing protein At5g15300 OS=Arabidopsis thaliana GN=PCMP-E40 PE=2 SV=2) HSP 1 Score: 79.337 bits (194), Expect = 2.005e-14 Identity = 51/179 (28.49%), Postives = 81/179 (45.25%), Query Frame = 1 Query: 67 IKQLQAHLTTTGQFQSKLCPVRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAILRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHXXXXXXXXXXXXXXVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRM 603 +KQ+ A + G + V ++I +LS L YAH LF +I P + N +LRG A S KP V Y +M + D T +F LKAC+++ H V+RH +A G++ A ++FD+ +W+++ +G A+ EA+ LF M Sbjct: 28 LKQIHASMVVNGLMSN--LSVVGELIYSASLSVPGALKYAHKLFDEIPKPDVSICNHVLRGSAQSMKPEKTVSLYTEMEKRGVSPDRYTFTFVLKACSKLEWRSNGFAFHGKVVRHGFVLNEYVKNALILFHANCGDLGIASELFDDSAKAHKVAWSSMTSGYAKRGKIDEAMRLFDEM 204 HSP 2 Score: 71.2478 bits (173), Expect = 5.459e-12 Identity = 50/173 (28.90%), Postives = 82/173 (47.40%), Query Frame = 1 Query: 172 ELAYAHALFRQINAPSTNDFNAILRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLR-----HXXXXXXXXXXXXXXVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLG 675 E+ A LF + +NA++ G + P A+ +++M D +T L ACA + L ++H ++L +YAK G I A +VF + RD+++WN LI GLA + A ++++F+ M+ V+ PNEVT +G + AC H G Sbjct: 224 EMDSARELFDRFTEKDVVTWNAMISGYVNCGYPKEALGIFKEMRDAGEHPDVVTILSLLSACAVLGDLETGKRLHIYILETASVSSSIYVGTPIWNALIDMYAKCGSIDRAIEVFRGVKDRDLSTWNTLIVGLALHH-AEGSIEMFEEMQRLKVW-PNEVTFIGVILACSHSG 394
BLAST of FC878063 vs. ExPASy Swiss-Prot
Match: PP364_ARATH (Pentatricopeptide repeat-containing protein At5g04780 OS=Arabidopsis thaliana GN=PCMP-H16 PE=2 SV=2) HSP 1 Score: 79.337 bits (194), Expect = 2.005e-14 Identity = 48/183 (26.23%), Postives = 91/183 (49.73%), Query Frame = 1 Query: 127 VRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAILRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHXXXXXXXXXXXXXXVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLG 675 V + +++ YA + + A +F + S+ +++++ G + A+L YR+ R S + T S + AC+ + AL E Q+H+ + + +YAK G + + +F E+ +++ WN +I+G A+ E + LF++M+ +G+ PNEVT L+ CGH G Sbjct: 199 VGTALLDLYAKCGM--IKDAVQVFESMQDKSSVTWSSMVAGYVQNKNYEEALLLYRRAQRMSLEQNQFTLSSVICACSNLAALIEGKQMHAVICKSGFGSNVFVASSAVDMYAKCGSLRESYIIFSEVQEKNLELWNTIISGFAKHARPKEVMILFEKMQQDGM-HPNEVTFSSLLSVCGHTG 378
BLAST of FC878063 vs. ExPASy Swiss-Prot
Match: PP337_ARATH (Pentatricopeptide repeat-containing protein At4g25270, chloroplastic OS=Arabidopsis thaliana GN=PCMP-E53 PE=2 SV=1) HSP 1 Score: 79.337 bits (194), Expect = 2.005e-14 Identity = 50/179 (27.93%), Postives = 89/179 (49.72%), Query Frame = 1 Query: 127 VRSKIIEFYALSPLNELAYAHALFRQINAPSTNDF--NAILRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHXXXXXXXXXXXXXXVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALA 657 + SK++ YA E+A H +F +++ ++ F N+++ G A + +A+ Y QM + D T LKAC + ++ IH +++ +YAK G+IV A+ VFD + +D SWN+++ G L EA+D+F+ M G+ +P++V + LA Sbjct: 129 ISSKLVRLYASCGYAEVA--HEVFDRMSKRDSSPFAWNSLISGYAELGQYEDAMALYFQMAEDGVKPDRFTFPRVLKACGGIGSVQIGEAIHRDLVKEGFGYDVYVLNALVVMYAKCGDIVKARNVFDMIPHKDYVSWNSMLTGYLHHGLLHEALDIFRLMVQNGI-EPDKVAISSVLA 304
BLAST of FC878063 vs. ExPASy Swiss-Prot
Match: PP355_ARATH (Pentatricopeptide repeat-containing protein At4g38010 OS=Arabidopsis thaliana GN=PCMP-E45 PE=2 SV=1) HSP 1 Score: 78.5666 bits (192), Expect = 3.420e-14 Identity = 57/203 (28.08%), Postives = 87/203 (42.86%), Query Frame = 1 Query: 70 KQLQAHLTTTGQFQSKLCPVRSKIIEFYALSPLNELAYAHALFRQINAP-STNDFNAILRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHXXXXXXXXXXXXXXVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLG 675 KQ+Q L T + L + +K++ F S + +Y+ + I + S+ +N +L A KP + Y+ + D T KAC + + E QIH V + Y GE +A KVF EM VRD+ SW +I G + L EA+D F +M +E PN T + L + G +G Sbjct: 23 KQIQTQLITRDLLRDDL--IINKVVTFLGKSA-DFASYSSVILHSIRSVLSSFSYNTLLSSYAVCDKPRVTIFAYKTFVSNGFSPDMFTFPPVFKACGKFSGIREGKQIHGIVTKMGFYDDIYVQNSLVHFYGVCGESRNACKVFGEMPVRDVVSWTGIITGFTRTGLYKEALDTFSKMDVE----PNLATYVCVLVSSGRVG 218 HSP 2 Score: 73.1738 bits (178), Expect = 1.437e-12 Identity = 49/169 (28.99%), Postives = 82/169 (48.52%), Query Frame = 1 Query: 172 ELAYAHALFRQINAPSTNDFNAILRGLAHSSKPTNAVLWYRQMLRGSH-RSDALTCSFALKACARVLALFETLQIHSHVLRHXXXXXXXXXXXXXXVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLG 675 +L+ A +F ++ +N+++ GL H + A+ + M S + D + L ACA + A+ +H ++L +YAK G I +A ++F+ + +++ +WNAL+ GLA E++ F+ M G FKPN VT L AL AC H G Sbjct: 254 QLSDAMRVFGELEKKDKVSWNSMISGLVHCERSKEAIDLFSLMQTSSGIKPDGHILTSVLSACASLGAVDHGRWVHEYILTAGIKWDTHIGTAIVDMYAKCGYIETALEIFNGIRSKNVFTWNALLGGLAIHGHGLESLRYFEEMVKLG-FKPNLVTFLAALNACCHTG 421 The following BLAST results are available for this feature:
BLAST of FC878063 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 154
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >FC878063 ID=FC878063; Name=FC878063; organism=Citrus clementina; type=EST; length=676bpback to top |