FC878075
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_DEIRA (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Deinococcus radiodurans GN=gatA PE=3 SV=1) HSP 1 Score: 110.923 bits (276), Expect = 9.099e-24 Identity = 78/243 (32.10%), Postives = 120/243 (49.38%), Query Frame = 2 Query: 44 TVLDYSKAYSSGDITPRMVAERFITAVRESSNPPMKMSFFINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWL-HKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQPTVSLP 769 T ++A SG+ TP+ + + R + + +N++ E+ QA R + GE + L GV I VKD I+ + TT G++ L + V P T A +L+ GA++VGK NM E G+S + G NP+D ++ + PV+LG D GGSVR PAALCGV GFKPT+GR+ G++ ++ +G A + ED ++ I G P ++ P Sbjct: 6 TAAQLARAVQSGETTPQQLLHGALA--RAEAVRGLNALVSLNSHAEE---QAAAVQGRMQAGETLP-LAGVPIVVKDNINVTGTRTTCGSRMLANYVSPYTATAA--QKLQGAGAVIVGKANMDEFAMGSSTESSASGPTLNPWDHERVPGGSSGGSAVAVAAGISPVSLGSDTGGSVRQPAALCGVYGFKPTYGRVSRYGLVAYASSLDQIGPFARSAEDLALLMNVIAGHDPRDATSLDAP 240
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_CARHZ (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) GN=gatA PE=3 SV=1) HSP 1 Score: 110.923 bits (276), Expect = 9.099e-24 Identity = 68/206 (33.01%), Postives = 100/206 (48.54%), Query Frame = 2 Query: 149 KMSFFINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQPTVSL 766 K+ ++ E LK A E + +GE L GV +A+KD + + TT +K L P DA V +L+ GA+ GKTN+ E G+S N + RNP+D ++ VALG D GGS+R PAA CG+VG KPT+G + G++ ++ +G A TVEDA ++ I G P + + Sbjct: 39 KIQAYVTVTRELGLKMAREVDEKIARGEDPGPLAGVPVAIKDNMSTAGIRTTCSSKILENYIP-PYDATVVEKLKEAGAVFTGKTNLDEFAMGSSTENSRFFPTRNPWDLERVPGGSSGGSAASVAAGEAVVALGSDTGGSIRQPAAFCGIVGLKPTYGAVSRYGLVAFASSLDQIGPFARTVEDAALLLNVIAGHDPKDSTSADI 243
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_BDEBA (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Bdellovibrio bacteriovorus GN=gatA PE=3 SV=1) HSP 1 Score: 110.923 bits (276), Expect = 9.099e-24 Identity = 70/235 (29.79%), Postives = 115/235 (48.94%), Query Frame = 2 Query: 53 DYSKAYSSGDITPRMVAERFITAVRESSNPPMKMSFFINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQPT 757 + S+A ++ I+ + V F+ + E+ NP K++ F + N + + ++A R GE + +L GV +K+ TT G+K L P DA V RL+ G +++GK N E G+S +GV +NP+D ++ L LG D GGS+R PA+ CG+VG KPT+GR+ G++ ++ G + ++V DA + I+G P T Sbjct: 10 EISEAVNNRSISAKEVTLHFLKRI-ENLNP--KLNAFTSLNPQAV-QEAEAVDARIANGEDVGLLAGVPFGIKEMFCTKGLTTTAGSKILENFVP-PYDATAVARLKKSGIVVMGKLNQDEFAMGSSNETSFHGVVKNPWDLERVPGGSSGGSAAAQASRLVAGTLGTDTGGSIRQPASFCGIVGVKPTYGRVSRYGIVAYASSLDQAGPMVSSVRDAALTLEVISGFDPQDSTT 239
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_UNCTG (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Uncultured termite group 1 bacterium phylotype Rs-D17 GN=gatA PE=3 SV=1) HSP 1 Score: 110.538 bits (275), Expect = 1.188e-23 Identity = 73/228 (32.02%), Postives = 108/228 (47.37%), Query Frame = 2 Query: 47 VLDYSKAYSSGDITPRMVAERFITAVRESSNPPMKMSFFINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHK-VRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAI 727 V D + SG I + + ++E+ K+ F+ NEE LKQA +S + K G L+GV I +KD I T +K+L + P DA + +L+ G I VG+TNM E G S Y NP++ I + P ALG D GGS+R PA CG+VG+KP++G I G L + +G+ + TV+DA ++ + I Sbjct: 9 VKDLCEKIRSGQIKSIEIVKACFKRIKETDP---KVKAFLKLNEERSLKQAAQSDDKIKTGAECGSLEGVPIGIKDNIMIKGESMTSASKYLENYISPY--DAAVIEKLKEAGVIFVGRTNMDEFAMGGSTETSVYQKTANPWNIDYIPGGSSGGSAAAVSSGMVPFALGSDTGGSIRQPAGFCGIVGYKPSYGLISRYGACALASSFDQIGVFSKTVKDASLLTSFI 231
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_SYNR3 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Synechococcus sp. (strain RCC307) GN=gatA PE=3 SV=1) HSP 1 Score: 110.538 bits (275), Expect = 1.188e-23 Identity = 68/238 (28.57%), Postives = 114/238 (47.90%), Query Frame = 2 Query: 56 YSKAYSSGDITPRMVAERFITAVRESSNPPMKMSFFINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQPTVSLP 769 +S A +G T + +E+ + + ++ P +K + ++ +A + + K+ L GV I +KD + TT ++ L P ++ RL GA++VGKTN+ E G+S +G+ NP+DP ++ C VALG D GGS+R PA+ CGVVG KPT+GR+ G++ ++ +G + TV D+ V I G P ++ +P Sbjct: 6 WSDALRNGSATAKEHSEQALERIA-ATEPELKAFVNVTGDQARAQAEAVDQAIAAKQDP--GPLAGVTIGIKDNLCTKGVTTTCSSRMLENFVP-PYESTVTERLWKAGAVMVGKTNLDEFAMGSSTETSAFGMTSNPWDPGRVPGGSSGGSAACVAAGQCDVALGSDTGGSIRQPASFCGVVGLKPTYGRVSRWGLVAFASSLDQIGPFSRTVADSAAVLQVIAGHDPRDSTSLDVP 239
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_SYNJA (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Synechococcus sp. (strain JA-3-3Ab) GN=gatA PE=3 SV=1) HSP 1 Score: 110.538 bits (275), Expect = 1.188e-23 Identity = 76/228 (33.33%), Postives = 107/228 (46.93%), Query Frame = 2 Query: 149 KMSFFINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAING--PLPSQQPTVSLPKVSFPLLKSATSISAIKLG 826 ++ FI EE L+QA R + GE I L G+ +AVKD + TT ++ L P ++ RL G + VGKTN+ E G+S N + NP+D +++ VALG D GGS+R PAA CGVVG KPT+G + G++ ++ VG TVED ++ I G PL S V +P S L+ I K+G Sbjct: 35 QLKSFITVTEELALQQAKAVDARIRAGEEIGPLAGIPLAVKDNLCTQGIRTTCASRMLEGFIP-PYESTVTARLAAAGMVTVGKTNLDEFAMGSSTENSAFQRTANPWDLTRVPGGSSGGSAAAVAADQAVVALGSDTGGSIRQPAAFCGVVGLKPTYGLVSRYGLVAFASSLDQVGPFGRTVEDVALLLQGIAGHDPLDSTSLKVEIPDYSQALI---PEIKGFKIG 258
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_PROA2 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Prosthecochloris aestuarii (strain DSM 271 / SK 413) GN=gatA PE=3 SV=1) HSP 1 Score: 110.538 bits (275), Expect = 1.188e-23 Identity = 75/244 (30.74%), Postives = 107/244 (43.85%), Query Frame = 2 Query: 95 MVAERFITAVRESSNPPMKMSFFINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQPTVSLPKVSFPLLKSATSISAIKLG 826 M E +TA + + +I+ ++ L+QA + GE L G+ +A+KD I T +K L DA + RL+ A+ +GK NM E G+S N +G NPYD +K+ L VALG D GGSVR PA C VVG KPT+GRI GV+ + +GIL+ +DA V I G S + + S+ +K+G Sbjct: 18 MSCEAVVTAYLQRIEATRDRNIYISVFYDEALRQARSLDRKLDAGETPGKLFGMPMAIKDNISIEGTGLTCASKILSNYT-AVYDATVIRRLKEEDAVFLGKVNMDEFAMGSSNENSSFGPVPNPYDSTKVPGGSSGGSAAAVAGDLALVALGSDTGGSVRQPAGFCNVVGLKPTYGRISRYGVVAFGSSFDQIGILSKNADDAAAVLGVIAGNDGSDATSSHNQVPDYAAEMEGVSLRGLKIG 260
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_DICNV (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Dichelobacter nodosus (strain VCS1703A) GN=gatA PE=3 SV=1) HSP 1 Score: 110.538 bits (275), Expect = 1.188e-23 Identity = 74/246 (30.08%), Postives = 117/246 (47.56%), Query Frame = 2 Query: 35 HRWTVLDYSKAYSSGDITPRMVAERFITAVRESSNPPMKMSFFINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQPTVSLPK 772 H TV + + + ++ + + F++ +++ NP K++ +I + L A S R +KG S LDG+ + KD TT G+K L + P + A V RL G++L GK +M E G+S ++G NP+D +I L P A G D GGSVR PAA CG+ G KPT+G G++ ++ G+LA T +D ++ + G P + + S PK Sbjct: 5 HHKTVAELATLLHNKTLSSVELTQHFLSRIQQY-NP--KLNAYICTTADRALADAKASDERRQKGAAHSPLDGIPMGHKDLFCTKGIATTAGSKMLERFIP-SYTATVVARLEAAGSVLTGKLSMDEFAMGSSNERSYFGAVYNPWDEQRIPGGSSGGSAAAVAARLIPYATGSDTGGSVRQPAAYCGITGIKPTYGTCSRWGMIAYASSLDQAGVLAKTAQDCALILNEMAGHDP--KDSTSNPK 244
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA2_CLOAB (Glutamyl-tRNA(Gln) amidotransferase subunit A 2 OS=Clostridium acetobutylicum GN=gatA2 PE=3 SV=1) HSP 1 Score: 110.153 bits (274), Expect = 1.552e-23 Identity = 62/195 (31.79%), Postives = 102/195 (52.31%), Query Frame = 2 Query: 149 KMSFFINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAING 733 +++ +I E+ LK+A + + G+ + L G+ IA+KD I TT +K L+ P DA + +L+ AI++GK NM E G+S N + + +NP D +++ + P++LG D GGS+R PAA CGVVG KPT+G + G++ ++ +G L TV+D + I+G Sbjct: 39 EINAYITLCEDYALKEAKDVDKKIANGDKVGRLAGIPIAIKDNICTDGIKTTCASKMLYDFVP-PYDATVIKKLKAEDAIIIGKVNMDEFAMGSSTENSAFKITKNPRDITRVPGGSSGGSAAVVAAKMAPISLGSDTGGSIRQPAAFCGVVGLKPTYGLVSRFGLIAFASSLDQIGPLGKTVKDCAELLEVISG 232
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_SYNJB (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Synechococcus sp. GN=gatA PE=3 SV=1) HSP 1 Score: 109.768 bits (273), Expect = 2.027e-23 Identity = 75/228 (32.89%), Postives = 107/228 (46.93%), Query Frame = 2 Query: 149 KMSFFINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAING--PLPSQQPTVSLPKVSFPLLKSATSISAIKLG 826 ++ FI EE L+QA R + GE I L G+ +AVKD + TT ++ L P ++ RL G + VGKTN+ E G+S N + NP+D +++ VALG D GGS+R PAA CGVVG KPT+G + G++ ++ VG TVED ++ I G P+ S V +P S L+ I K+G Sbjct: 35 QLKSFITVTEELALQQARAVDARIRAGEAIGPLAGIPLAVKDNLCTQGIRTTCASRMLEGFIP-PYESTVTARLAAAGMVTVGKTNLDEFAMGSSTENSAFQRTANPWDLTRVPGGSSGGSAAAVAADQAVVALGSDTGGSIRQPAAFCGVVGLKPTYGLVSRYGLVAFASSLDQVGPFGRTVEDVALLLQGIAGHDPMDSTSLKVDIPDYSQALI---PDIKGFKIG 258 The following BLAST results are available for this feature:
BLAST of FC878075 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >FC878075 ID=FC878075; Name=FC878075; organism=Citrus clementina; type=EST; length=849bpback to top |