FC878075

Overview
NameFC878075
Unique NameFC878075
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length849
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_DEIRA (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Deinococcus radiodurans GN=gatA PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 9.099e-24
Identity = 78/243 (32.10%), Postives = 120/243 (49.38%), Query Frame = 2
Query:   44 TVLDYSKAYSSGDITPRMVAERFITAVRESSNPPMKMSFFINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWL-HKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQPTVSLP 769
            T    ++A  SG+ TP+ +    +   R  +   +     +N++ E+   QA     R + GE +  L GV I VKD I+ +   TT G++ L + V P T  A    +L+  GA++VGK NM E   G+S  +   G   NP+D  ++               + PV+LG D GGSVR PAALCGV GFKPT+GR+   G++    ++  +G  A + ED  ++   I G  P    ++  P
Sbjct:    6 TAAQLARAVQSGETTPQQLLHGALA--RAEAVRGLNALVSLNSHAEE---QAAAVQGRMQAGETLP-LAGVPIVVKDNINVTGTRTTCGSRMLANYVSPYTATAA--QKLQGAGAVIVGKANMDEFAMGSSTESSASGPTLNPWDHERVPGGSSGGSAVAVAAGISPVSLGSDTGGSVRQPAALCGVYGFKPTYGRVSRYGLVAYASSLDQIGPFARSAEDLALLMNVIAGHDPRDATSLDAP 240          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_CARHZ (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) GN=gatA PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 9.099e-24
Identity = 68/206 (33.01%), Postives = 100/206 (48.54%), Query Frame = 2
Query:  149 KMSFFINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQPTVSL 766
            K+  ++    E  LK A E   +  +GE    L GV +A+KD +  +   TT  +K L    P   DA  V +L+  GA+  GKTN+ E   G+S  N  +   RNP+D  ++                  VALG D GGS+R PAA CG+VG KPT+G +   G++    ++  +G  A TVEDA ++   I G  P    +  +
Sbjct:   39 KIQAYVTVTRELGLKMAREVDEKIARGEDPGPLAGVPVAIKDNMSTAGIRTTCSSKILENYIP-PYDATVVEKLKEAGAVFTGKTNLDEFAMGSSTENSRFFPTRNPWDLERVPGGSSGGSAASVAAGEAVVALGSDTGGSIRQPAAFCGIVGLKPTYGAVSRYGLVAFASSLDQIGPFARTVEDAALLLNVIAGHDPKDSTSADI 243          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_BDEBA (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Bdellovibrio bacteriovorus GN=gatA PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 9.099e-24
Identity = 70/235 (29.79%), Postives = 115/235 (48.94%), Query Frame = 2
Query:   53 DYSKAYSSGDITPRMVAERFITAVRESSNPPMKMSFFINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQPT 757
            + S+A ++  I+ + V   F+  + E+ NP  K++ F + N + + ++A     R   GE + +L GV   +K+        TT G+K L    P   DA  V RL+  G +++GK N  E   G+S     +GV +NP+D  ++               L    LG D GGS+R PA+ CG+VG KPT+GR+   G++    ++   G + ++V DA +    I+G  P    T
Sbjct:   10 EISEAVNNRSISAKEVTLHFLKRI-ENLNP--KLNAFTSLNPQAV-QEAEAVDARIANGEDVGLLAGVPFGIKEMFCTKGLTTTAGSKILENFVP-PYDATAVARLKKSGIVVMGKLNQDEFAMGSSNETSFHGVVKNPWDLERVPGGSSGGSAAAQASRLVAGTLGTDTGGSIRQPASFCGIVGVKPTYGRVSRYGIVAYASSLDQAGPMVSSVRDAALTLEVISGFDPQDSTT 239          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_UNCTG (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Uncultured termite group 1 bacterium phylotype Rs-D17 GN=gatA PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.188e-23
Identity = 73/228 (32.02%), Postives = 108/228 (47.37%), Query Frame = 2
Query:   47 VLDYSKAYSSGDITPRMVAERFITAVRESSNPPMKMSFFINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHK-VRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAI 727
            V D  +   SG I    + +     ++E+     K+  F+  NEE  LKQA +S  + K G     L+GV I +KD I       T  +K+L   + P   DA  + +L+  G I VG+TNM E   G S     Y    NP++   I               + P ALG D GGS+R PA  CG+VG+KP++G I   G   L  +   +G+ + TV+DA ++ + I
Sbjct:    9 VKDLCEKIRSGQIKSIEIVKACFKRIKETDP---KVKAFLKLNEERSLKQAAQSDDKIKTGAECGSLEGVPIGIKDNIMIKGESMTSASKYLENYISPY--DAAVIEKLKEAGVIFVGRTNMDEFAMGGSTETSVYQKTANPWNIDYIPGGSSGGSAAAVSSGMVPFALGSDTGGSIRQPAGFCGIVGYKPSYGLISRYGACALASSFDQIGVFSKTVKDASLLTSFI 231          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_SYNR3 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Synechococcus sp. (strain RCC307) GN=gatA PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.188e-23
Identity = 68/238 (28.57%), Postives = 114/238 (47.90%), Query Frame = 2
Query:   56 YSKAYSSGDITPRMVAERFITAVRESSNPPMKMSFFINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQPTVSLP 769
            +S A  +G  T +  +E+ +  +  ++ P +K    +  ++     +A +  +  K+      L GV I +KD +      TT  ++ L    P   ++    RL   GA++VGKTN+ E   G+S     +G+  NP+DP ++                C VALG D GGS+R PA+ CGVVG KPT+GR+   G++    ++  +G  + TV D+  V   I G  P    ++ +P
Sbjct:    6 WSDALRNGSATAKEHSEQALERIA-ATEPELKAFVNVTGDQARAQAEAVDQAIAAKQDP--GPLAGVTIGIKDNLCTKGVTTTCSSRMLENFVP-PYESTVTERLWKAGAVMVGKTNLDEFAMGSSTETSAFGMTSNPWDPGRVPGGSSGGSAACVAAGQCDVALGSDTGGSIRQPASFCGVVGLKPTYGRVSRWGLVAFASSLDQIGPFSRTVADSAAVLQVIAGHDPRDSTSLDVP 239          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_SYNJA (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Synechococcus sp. (strain JA-3-3Ab) GN=gatA PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.188e-23
Identity = 76/228 (33.33%), Postives = 107/228 (46.93%), Query Frame = 2
Query:  149 KMSFFINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAING--PLPSQQPTVSLPKVSFPLLKSATSISAIKLG 826
            ++  FI   EE  L+QA     R + GE I  L G+ +AVKD +      TT  ++ L    P   ++    RL   G + VGKTN+ E   G+S  N  +    NP+D +++                  VALG D GGS+R PAA CGVVG KPT+G +   G++    ++  VG    TVED  ++   I G  PL S    V +P  S  L+     I   K+G
Sbjct:   35 QLKSFITVTEELALQQAKAVDARIRAGEEIGPLAGIPLAVKDNLCTQGIRTTCASRMLEGFIP-PYESTVTARLAAAGMVTVGKTNLDEFAMGSSTENSAFQRTANPWDLTRVPGGSSGGSAAAVAADQAVVALGSDTGGSIRQPAAFCGVVGLKPTYGLVSRYGLVAFASSLDQVGPFGRTVEDVALLLQGIAGHDPLDSTSLKVEIPDYSQALI---PEIKGFKIG 258          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_PROA2 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Prosthecochloris aestuarii (strain DSM 271 / SK 413) GN=gatA PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.188e-23
Identity = 75/244 (30.74%), Postives = 107/244 (43.85%), Query Frame = 2
Query:   95 MVAERFITAVRESSNPPMKMSFFINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQPTVSLPKVSFPLLKSATSISAIKLG 826
            M  E  +TA  +        + +I+   ++ L+QA     +   GE    L G+ +A+KD I       T  +K L        DA  + RL+   A+ +GK NM E   G+S  N  +G   NPYD +K+               L  VALG D GGSVR PA  C VVG KPT+GRI   GV+    +   +GIL+   +DA  V   I G   S   +       +       S+  +K+G
Sbjct:   18 MSCEAVVTAYLQRIEATRDRNIYISVFYDEALRQARSLDRKLDAGETPGKLFGMPMAIKDNISIEGTGLTCASKILSNYT-AVYDATVIRRLKEEDAVFLGKVNMDEFAMGSSNENSSFGPVPNPYDSTKVPGGSSGGSAAAVAGDLALVALGSDTGGSVRQPAGFCNVVGLKPTYGRISRYGVVAFGSSFDQIGILSKNADDAAAVLGVIAGNDGSDATSSHNQVPDYAAEMEGVSLRGLKIG 260          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_DICNV (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Dichelobacter nodosus (strain VCS1703A) GN=gatA PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.188e-23
Identity = 74/246 (30.08%), Postives = 117/246 (47.56%), Query Frame = 2
Query:   35 HRWTVLDYSKAYSSGDITPRMVAERFITAVRESSNPPMKMSFFINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQPTVSLPK 772
            H  TV + +    +  ++   + + F++ +++  NP  K++ +I    +  L  A  S  R +KG   S LDG+ +  KD        TT G+K L +  P +  A  V RL   G++L GK +M E   G+S    ++G   NP+D  +I               L P A G D GGSVR PAA CG+ G KPT+G     G++    ++   G+LA T +D  ++   + G  P  + + S PK
Sbjct:    5 HHKTVAELATLLHNKTLSSVELTQHFLSRIQQY-NP--KLNAYICTTADRALADAKASDERRQKGAAHSPLDGIPMGHKDLFCTKGIATTAGSKMLERFIP-SYTATVVARLEAAGSVLTGKLSMDEFAMGSSNERSYFGAVYNPWDEQRIPGGSSGGSAAAVAARLIPYATGSDTGGSVRQPAAYCGITGIKPTYGTCSRWGMIAYASSLDQAGVLAKTAQDCALILNEMAGHDP--KDSTSNPK 244          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA2_CLOAB (Glutamyl-tRNA(Gln) amidotransferase subunit A 2 OS=Clostridium acetobutylicum GN=gatA2 PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.552e-23
Identity = 62/195 (31.79%), Postives = 102/195 (52.31%), Query Frame = 2
Query:  149 KMSFFINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAING 733
            +++ +I   E+  LK+A +   +   G+ +  L G+ IA+KD I      TT  +K L+   P   DA  + +L+   AI++GK NM E   G+S  N  + + +NP D +++               + P++LG D GGS+R PAA CGVVG KPT+G +   G++    ++  +G L  TV+D   +   I+G
Sbjct:   39 EINAYITLCEDYALKEAKDVDKKIANGDKVGRLAGIPIAIKDNICTDGIKTTCASKMLYDFVP-PYDATVIKKLKAEDAIIIGKVNMDEFAMGSSTENSAFKITKNPRDITRVPGGSSGGSAAVVAAKMAPISLGSDTGGSIRQPAAFCGVVGLKPTYGLVSRFGLIAFASSLDQIGPLGKTVKDCAELLEVISG 232          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_SYNJB (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Synechococcus sp. GN=gatA PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 2.027e-23
Identity = 75/228 (32.89%), Postives = 107/228 (46.93%), Query Frame = 2
Query:  149 KMSFFINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAING--PLPSQQPTVSLPKVSFPLLKSATSISAIKLG 826
            ++  FI   EE  L+QA     R + GE I  L G+ +AVKD +      TT  ++ L    P   ++    RL   G + VGKTN+ E   G+S  N  +    NP+D +++                  VALG D GGS+R PAA CGVVG KPT+G +   G++    ++  VG    TVED  ++   I G  P+ S    V +P  S  L+     I   K+G
Sbjct:   35 QLKSFITVTEELALQQARAVDARIRAGEAIGPLAGIPLAVKDNLCTQGIRTTCASRMLEGFIP-PYESTVTARLAAAGMVTVGKTNLDEFAMGSSTENSAFQRTANPWDLTRVPGGSSGGSAAAVAADQAVVALGSDTGGSIRQPAAFCGVVGLKPTYGLVSRYGLVAFASSLDQVGPFGRTVEDVALLLQGIAGHDPMDSTSLKVDIPDYSQALI---PDIKGFKIG 258          
The following BLAST results are available for this feature:
BLAST of FC878075 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GATA_DEIRA9.099e-2432.10Glutamyl-tRNA(Gln) amidotransferase subunit A OS=D... [more]
GATA_CARHZ9.099e-2433.01Glutamyl-tRNA(Gln) amidotransferase subunit A OS=C... [more]
GATA_BDEBA9.099e-2429.79Glutamyl-tRNA(Gln) amidotransferase subunit A OS=B... [more]
GATA_UNCTG1.188e-2332.02Glutamyl-tRNA(Gln) amidotransferase subunit A OS=U... [more]
GATA_SYNR31.188e-2328.57Glutamyl-tRNA(Gln) amidotransferase subunit A OS=S... [more]
GATA_SYNJA1.188e-2333.33Glutamyl-tRNA(Gln) amidotransferase subunit A OS=S... [more]
GATA_PROA21.188e-2330.74Glutamyl-tRNA(Gln) amidotransferase subunit A OS=P... [more]
GATA_DICNV1.188e-2330.08Glutamyl-tRNA(Gln) amidotransferase subunit A OS=D... [more]
GATA2_CLOAB1.552e-2331.79Glutamyl-tRNA(Gln) amidotransferase subunit A 2 OS... [more]
GATA_SYNJB2.027e-2332.89Glutamyl-tRNA(Gln) amidotransferase subunit A OS=S... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA35BB11RM1 IVIA1 Citrus clementina cDNA clone IC0AAA35BB11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878075 ID=FC878075; Name=FC878075; organism=Citrus clementina; type=EST; length=849bp
TCTGCCTCTGTCTTCAGAAAAGCAGCCGTTTTTCCATCGCTGGACTGTAT
TAGATTATTCAAAAGCCTACAGTTCCGGAGATATTACTCCTCGTATGGTA
GCAGAGCGGTTTATAACCGCAGTACGTGAGTCTTCAAACCCTCCAATGAA
AATGTCATTCTTCATTAACAACAATGAAGAAGATATTCTAAAGCAAGCTA
CAGAGTCGACTCTTCGGTATAAAAAAGGAGAGCCAATATCGGTTCTAGAT
GGAGTCCTAATTGCAGTCAAGGATGAAATTGATTGTTCTCCTTACCCAAC
TACAGGAGGCACCAAGTGGTTGCATAAAGTTAGACCTTGCACAGGTGATG
CATGCTGCGTTATGCGCCTCAGATTGTGCGGCGCCATACTTGTTGGGAAA
ACTAATATGCATGAGCTCGGGGCTGGAACAAGTGGGATAAATCCTCATTA
TGGGGTCGCTAGAAATCCATACGACCCCAGCAAAATCACTGGGGGTTCTT
CTAGTGGATCAGCAGCAGTGGTGGCTGCAGGATTGTGCCCTGTCGCCCTT
GGTGTTGATGGAGGAGGATCCGTGCGGATGCCTGCAGCTCTCTGTGGTGT
TGTTGGTTTTAAGCCAACTTTCGGGCGCATACCTCTTTCTGGTGTTCTTC
CACTGAACTGGACAGTAGGAATGGTTGGAATTTTAGCAGCCACTGTAGAA
GATGCATTGGTTGTTTATGCAGCTATTAATGGTCCACTTCCTTCCCAACA
GCCCACTGTTTCATTGCCAAAAGTATCGTTCCCACTGCTGAAGTCTGCAA
CATCAATATCAGCCATCAAATTGGGCAAGTATGATGCGTGGTTCAACGA
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