FC878075

Overview
NameFC878075
Unique NameFC878075
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length849
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_PELCD (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) GN=gatA PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 2.027e-23
Identity = 76/268 (28.36%), Postives = 126/268 (47.01%), Query Frame = 2
Query:   44 TVLDYSKAYSSGDITPRMVAERFITAVRESSNPPMKMSFFINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHK-VRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQPTVSLPKVSFPLLKSATSISAIKLGKYDAWF 844
            T+ +      + +I+ R + + F+T + ++     ++  FI  +EE  LK A  +  R   G   S L G+ +A+KD        TT  ++ L   V P +G A  V +L+   A+++GK NM E   G+S  N  +G  +NP++   +                    LG D GGS+R PA+ CGVVG KPT+GR+   GV+    ++  VG L   VED  ++  A+ G  P+   +++ P   +        I  +K+G    +F
Sbjct:    7 TIHELQALLKNREISSRELTQAFLTRIADTDQ---RIGAFITQSEEAALKNAEAADARLAAGNAAS-LTGIPLALKDIFITEGMRTTCASRILDNFVPPYSGTA--VRKLQEQDAVILGKLNMDEFAMGSSNENSAFGTVKNPWNQDCVPGGSSGGSAACVAARQAVATLGTDTGGSIRQPASHCGVVGLKPTYGRVSRYGVIAYASSLDQVGPLTRDVEDCALMLGAVAGYDPADSTSINTPVPDYQAALK-QGIQGLKIGLPKEYF 267          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_METTH (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Methanobacterium thermoautotrophicum GN=gatA PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 2.027e-23
Identity = 72/243 (29.63%), Postives = 117/243 (48.15%), Query Frame = 2
Query:  104 ERFITAVRESSNPPMKMSFFINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTG--DACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQPTVSLPKVSFPLLKSATSISAIKLG 826
            E+F+  +   ++    ++ F+    E+ +K+A E   R   G+    L G++I VK  I+   +  +  +K L      TG  DA  + R++    I++G TNM E  AG+S     +G   NP  P +I               +C +ALG D GGS+R PA+ CGV+GFKPT+G +   G+L L  +   +G LAA V    +    I+G  P+   T+     S P L+    +  +++G
Sbjct:   25 EKFLKRIEAKNDD---INAFLEVRGEEAIKRAEEIDARIASGKETGKLAGLVIGVKSNINVEDFNVSAASKTLENY---TGSYDATVIRRIKEEDGIIIGMTNMDEFAAGSSTETSFFGPTDNPAAPGRIPGGSSGGSAAAVAAGMCDLALGSDTGGSIRNPASHCGVMGFKPTYGAVSRQGLLDLAMSFDQIGPLAADVSGISLALDVISGYDPADPTTLD----SSPDLEVERELKGLRVG 257          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_CLOBM (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Clostridium botulinum (strain Loch Maree / Type A3) GN=gatA PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 2.027e-23
Identity = 66/221 (29.86%), Postives = 110/221 (49.77%), Query Frame = 2
Query:   71 SSGDITPRMVAERFITAVRESSNPPMKMSFFINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAING 733
            S+ ++    +   F+  +    N   K+  ++  +EE+ +K+A E   + +K E +  L G+ + +KD I+      T  +K L        DA    +++    I++GK NM E   G+S  N  + +A+NP+D  ++                  ++LG D GGSVR PA+ CG+VG KPT+GRI  SGV+    T+  VG +   VED  ++ +AI G
Sbjct:   16 SNKEVKAEEITRAFLDRINLVDN---KLGAYLYVSEEEAIKKAKEIDGKIEKNEELKALSGIPVGIKDNINVKGMQNTCASKILQGYTS-PYDAHVTEKIKKEEGIILGKLNMDEFAMGSSTENSAFKLAKNPWDLERVPGGSSGGSAVAVSGCEATLSLGTDTGGSVRQPASFCGIVGLKPTYGRISRSGVVAFGSTLDQVGPMGKDVEDCALLTSAIAG 232          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_CLOB6 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Clostridium botulinum (strain 657 / Type Ba4) GN=gatA PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 2.027e-23
Identity = 66/221 (29.86%), Postives = 110/221 (49.77%), Query Frame = 2
Query:   71 SSGDITPRMVAERFITAVRESSNPPMKMSFFINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAING 733
            S+ ++    +   F+  +    N   K+  ++  +EE+ +K+A E   + +K E +  L G+ + +KD I+      T  +K L        DA    +++    I++GK NM E   G+S  N  + +A+NP+D  ++                  ++LG D GGSVR PA+ CG+VG KPT+GRI  SGV+    T+  VG +   VED  ++ +AI G
Sbjct:   16 SNKEVKAEEITRAFLDRINLVDN---KLGAYLYVSEEEAIKKAKEIDGKIEKNEELKALSGIPVGIKDNINVKGMQNTCASKILQGYTS-PYDAHVTEKIKKEEGIILGKLNMDEFAMGSSTENSAFKLAKNPWDLERVPGGSSGGSAVAVAGCEATLSLGTDTGGSVRQPASFCGIVGLKPTYGRISRSGVVAFGSTLDQVGPMGKDVEDCALLTSAIAG 232          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_ANAMM (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Anaplasma marginale (strain St. Maries) GN=gatA PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 2.027e-23
Identity = 75/234 (32.05%), Postives = 114/234 (48.72%), Query Frame = 2
Query:   44 TVLDYSKAYSSGDITPRMVAERFITAVRESSNPPMKMSFFINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSK----ITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAING 733
            ++L+  +   + D + R + E +I AV + +     ++ F+    E  L  A  +    ++GEPI  + G+ + VKD        TT  +  L    P T ++    +L   GA+++GK NM E   G+S     +G  +NP+  ++                    LC  ALG D GGSVR PAALCGVVG KPT+GR    G++    ++   G+LA TVEDA V+  AI G
Sbjct:    9 SILEAHRCLKNKDFSARELTEAYIGAVEQDT-----LNAFVTTTPELALAAADRTDGLLQRGEPIHPMSGIPVGVKDLFCTKGVRTTACSNILKNFVP-TYESTVSQKLWDSGAVMLGKLNMDEFAMGSSNTYSCFGPVKNPWKGTEGKDLTPGGSSGGSSAAVAGLLCAGALGSDTGGSVRQPAALCGVVGAKPTYGRCSRWGMIAYASSLDQAGVLARTVEDAAVMLNAICG 236          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_ANAMF (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Anaplasma marginale (strain Florida) GN=gatA PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 2.027e-23
Identity = 75/234 (32.05%), Postives = 114/234 (48.72%), Query Frame = 2
Query:   44 TVLDYSKAYSSGDITPRMVAERFITAVRESSNPPMKMSFFINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSK----ITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAING 733
            ++L+  +   + D + R + E +I AV + +     ++ F+    E  L  A  +    ++GEPI  + G+ + VKD        TT  +  L    P T ++    +L   GA+++GK NM E   G+S     +G  +NP+  ++                    LC  ALG D GGSVR PAALCGVVG KPT+GR    G++    ++   G+LA TVEDA V+  AI G
Sbjct:    9 SILEAHRCLKNKDFSARELTEAYIGAVEQDT-----LNAFVTTTPELALAAADRTDGLLQRGEPIHPMSGIPVGVKDLFCTKGVRTTACSNILKNFVP-TYESTVSQKLWDSGAVMLGKLNMDEFAMGSSNTYSCFGPVKNPWKGTEGKDLTPGGSSGGSSAAVAGLLCAGALGSDTGGSVRQPAALCGVVGAKPTYGRCSRWGMIAYASSLDQAGVLARTVEDAAVMLNAICG 236          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_RENSM (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Renibacterium salmoninarum (strain ATCC 33209 / DSM 20767 / IFO 15589) GN=gatA PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.648e-23
Identity = 70/234 (29.91%), Postives = 117/234 (50.00%), Query Frame = 2
Query:   71 SSGDITPRMVAERFITAVRESSNPPMKMSFFINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHK-VRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQPTVSLP 769
            +SG++T   V + ++  +        +++ F++ N E+ L+ A E       G+ +  L GV IA+KD I     PTT G+K L   + P   DA  + ++R     ++GKTN+ E   G+S  +  +G  RNP+D ++I                 P+ALG D GGS+R P A+ G VG KPT+G +   G + +  ++  +G ++ TV DA ++   I G  P    ++  P
Sbjct:   17 ASGEVTSVQVTQAYLDRIALVDG---ELNAFLHLNAEEALRVAAEVDADRAAGKELHELAGVPIAIKDLIVTKGQPTTAGSKILEGWISPY--DATVIEKIRAAKMPILGKTNLDEFAMGSSTEHSAFGPTRNPWDLTRIPGGSGGGSAAAVAAFEAPLALGTDTGGSIRQPGAVTGTVGVKPTYGGVSRYGAIAMASSLDQIGPVSRTVLDAALLQEVIGGHDPKDSTSLVDP 245          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_RALEH (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=gatA PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.648e-23
Identity = 68/233 (29.18%), Postives = 114/233 (48.93%), Query Frame = 2
Query:   65 AYSSGDITPRMVAERFITAVRESSNPPMKMSFFINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQPTVS 763
            A ++  ++   +A  ++  + +++     ++ FI+ + E  L QA  +  R  +GE  + L GV IA KD      +  T G+K L        DA  V R+   G + +GKTNM E   G+S  N H+G  RNP+D S++               L P A G D GGS+R P++  G+ G KPT+GR+   G++    ++   G +A + ED  ++  A+ G  P    +++
Sbjct:   17 ALAARSVSAEELAREYLARIEQAA----ALNAFIHVDAERTLAQARAADERRARGEA-APLTGVPIAHKDVFVTRGWRATAGSKMLANYES-PFDATVVERMAAAGMVTLGKTNMDEFAMGSSNENSHFGPVRNPWDTSRVPGGSSGGSAAAVAAGLAPAATGTDTGGSIRQPSSFSGITGIKPTYGRVSRYGMIAFASSLDQAGPMAHSAEDCALLLNAMAGFDPRDSTSIT 243          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_LEGPL (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Legionella pneumophila (strain Lens) GN=gatA PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.648e-23
Identity = 68/231 (29.44%), Postives = 115/231 (49.78%), Query Frame = 2
Query:   41 WTVLDYSKAYSSGDITPRMVAERFITAVRESSNPPMKMSFFINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAING 733
            +++   SKA  + + +   + +  I  ++ + +    ++ FI+ +E+  LK+A  + L  K GE    L G+ +A+KD        TT  +K L   +    DA  V + +  GAI++GKTNM E   G+S  N ++G  +NP+D  ++               L P A+G D GGS+R PAA CG+ G KPT+G +   G++    ++   G  A + ED  ++   I G
Sbjct:    4 YSLAQLSKALHNREFSSVELTQHCINKIQSNKD----LNAFISLDEDQALKEAQSADLVLKNGEG-KPLTGIPMALKDLFCTKRLNTTCASKMLANFQ-APYDATIVTKFKQNGAIIIGKTNMDEFAMGSSNENSYFGSVKNPWDRERVPGGSSGGSAAAVAGSLVPFAIGSDTGGSIRQPAAFCGISGIKPTYGLVSRYGMVAFASSLDQAGPFAKSAEDLAMILHCIAG 228          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_LEGPC (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Legionella pneumophila (strain Corby) GN=gatA PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.648e-23
Identity = 68/231 (29.44%), Postives = 115/231 (49.78%), Query Frame = 2
Query:   41 WTVLDYSKAYSSGDITPRMVAERFITAVRESSNPPMKMSFFINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAING 733
            +++   SKA  + + +   + +  I  ++ + +    ++ FI+ +E+  LK+A  + L  K GE    L G+ +A+KD        TT  +K L   +    DA  V + +  GAI++GKTNM E   G+S  N ++G  +NP+D  ++               L P A+G D GGS+R PAA CG+ G KPT+G +   G++    ++   G  A + ED  ++   I G
Sbjct:    4 YSLAQLSKALHNREFSSVELTQHCINKIQSNKD----LNAFISLDEDQALKEAQSADLVLKNGEG-KPLTGIPMALKDLFCTKRLNTTCASKMLANFQ-APYDATIVTKFKQNGAIIIGKTNMDEFAMGSSNENSYFGSVKNPWDRERVPGGSSGGSAAAVAGNLVPFAIGSDTGGSIRQPAAFCGISGIKPTYGLVSRYGMVAFASSLDQAGPFAKSAEDLAMILHCIAG 228          
The following BLAST results are available for this feature:
BLAST of FC878075 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GATA_PELCD2.027e-2328.36Glutamyl-tRNA(Gln) amidotransferase subunit A OS=P... [more]
GATA_METTH2.027e-2329.63Glutamyl-tRNA(Gln) amidotransferase subunit A OS=M... [more]
GATA_CLOBM2.027e-2329.86Glutamyl-tRNA(Gln) amidotransferase subunit A OS=C... [more]
GATA_CLOB62.027e-2329.86Glutamyl-tRNA(Gln) amidotransferase subunit A OS=C... [more]
GATA_ANAMM2.027e-2332.05Glutamyl-tRNA(Gln) amidotransferase subunit A OS=A... [more]
GATA_ANAMF2.027e-2332.05Glutamyl-tRNA(Gln) amidotransferase subunit A OS=A... [more]
GATA_RENSM2.648e-2329.91Glutamyl-tRNA(Gln) amidotransferase subunit A OS=R... [more]
GATA_RALEH2.648e-2329.18Glutamyl-tRNA(Gln) amidotransferase subunit A OS=R... [more]
GATA_LEGPL2.648e-2329.44Glutamyl-tRNA(Gln) amidotransferase subunit A OS=L... [more]
GATA_LEGPC2.648e-2329.44Glutamyl-tRNA(Gln) amidotransferase subunit A OS=L... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA35BB11RM1 IVIA1 Citrus clementina cDNA clone IC0AAA35BB11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878075 ID=FC878075; Name=FC878075; organism=Citrus clementina; type=EST; length=849bp
TCTGCCTCTGTCTTCAGAAAAGCAGCCGTTTTTCCATCGCTGGACTGTAT
TAGATTATTCAAAAGCCTACAGTTCCGGAGATATTACTCCTCGTATGGTA
GCAGAGCGGTTTATAACCGCAGTACGTGAGTCTTCAAACCCTCCAATGAA
AATGTCATTCTTCATTAACAACAATGAAGAAGATATTCTAAAGCAAGCTA
CAGAGTCGACTCTTCGGTATAAAAAAGGAGAGCCAATATCGGTTCTAGAT
GGAGTCCTAATTGCAGTCAAGGATGAAATTGATTGTTCTCCTTACCCAAC
TACAGGAGGCACCAAGTGGTTGCATAAAGTTAGACCTTGCACAGGTGATG
CATGCTGCGTTATGCGCCTCAGATTGTGCGGCGCCATACTTGTTGGGAAA
ACTAATATGCATGAGCTCGGGGCTGGAACAAGTGGGATAAATCCTCATTA
TGGGGTCGCTAGAAATCCATACGACCCCAGCAAAATCACTGGGGGTTCTT
CTAGTGGATCAGCAGCAGTGGTGGCTGCAGGATTGTGCCCTGTCGCCCTT
GGTGTTGATGGAGGAGGATCCGTGCGGATGCCTGCAGCTCTCTGTGGTGT
TGTTGGTTTTAAGCCAACTTTCGGGCGCATACCTCTTTCTGGTGTTCTTC
CACTGAACTGGACAGTAGGAATGGTTGGAATTTTAGCAGCCACTGTAGAA
GATGCATTGGTTGTTTATGCAGCTATTAATGGTCCACTTCCTTCCCAACA
GCCCACTGTTTCATTGCCAAAAGTATCGTTCCCACTGCTGAAGTCTGCAA
CATCAATATCAGCCATCAAATTGGGCAAGTATGATGCGTGGTTCAACGA
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