FC878075

Overview
NameFC878075
Unique NameFC878075
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length849
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_DESAA (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Desulfatibacillum alkenivorans (strain AK-01) GN=gatA PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 4.516e-23
Identity = 74/236 (31.36%), Postives = 122/236 (51.69%), Query Frame = 2
Query:   59 SKAYSSGDITPRMVAERFITAVRESSNPPMKMSFFINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQPTVSL 766
            SK  SS D+T + V +R      E+  P  ++  ++  ++E+ ++ A ++     +GE  + L G+ +A+KD +      TT  +K L    P   DA  + +L+  GA+LVGKTNM E   G+S  N  +   +NP+D ++                +C  A G D GGS+R P + C VVG KPT+GR+   G++    ++  +G  A TVEDA ++  A+ G  PS   +V++
Sbjct:   17 SKEISSQDLT-KAVLDRI-----EAVEP--QVDAYLTVSKEEAMEAAQKADKALAQGET-APLCGIPLAIKDVMCTKGVLTTCASKILGNFVP-PYDATSITKLKEAGAVLVGKTNMDEFAMGSSTENSAFKTTKNPWDLTRTPGGSSGGSAAAVAADMCLGAFGSDTGGSIRQPGSHCSVVGLKPTYGRVSRYGLVAFASSLDQIGPFAKTVEDAAILLQAVAGYDPSDSTSVNV 242          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_CLOK1 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Clostridium kluyveri (strain NBRC 12016) GN=gatA PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 4.516e-23
Identity = 75/252 (29.76%), Postives = 124/252 (49.21%), Query Frame = 2
Query:   80 DITPRMVAERFITAVRESSNPPMKMSFFINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHK-VRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQPT--VSLPKVSFPLLKSATSISAIKLG 826
            +I+   +A  ++  V E      K+  ++    E +L++A E   +  +GE +  L G+ I+VKD I       T  ++ L   + P   DA  V +++    I++GKTNM E   G+S  N    ++RNP+D +++                  +++G D GGS+R PA+ CGVVG KPT+GRI   G +    T+  +G +AA VED  ++   I+G       T  + +PK S  L K    I  +++G
Sbjct:   19 EISVEEIARTYLDRVDEVDG---KLGAYLYVASEGLLQKAKELDKKISRGEILGKLFGIPISVKDNISVENMQNTCASRMLTGYISPY--DAHVVEKIKFHQGIIIGKTNMDEFAMGSSTENSSIKLSRNPWDLNRVPGGSSGGSAISVAAGEAALSIGTDTGGSIRQPASFCGVVGLKPTYGRISRYGAVAFGSTLDQIGTIAADVEDCALLTECISGMDKRDFTTADMEVPKYSKSLSK---DIKGMRIG 262          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_AKKM8 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Akkermansia muciniphila (strain ATCC BAA-835) GN=gatA PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 4.516e-23
Identity = 70/195 (35.90%), Postives = 96/195 (49.23%), Query Frame = 2
Query:  203 ESTLRYKKGEPISV-LDGVLIAVKDEIDCSPYPTTGGTKWLHK-VRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQPTVSLPKVSF 781
            E+ L    G  IS  L G+ IAVKD I+    PT   ++ L   V P   DA  +  L+  G I +G+TNM E   G SG N  YG+ RNP  P +I                   ALG D GGS+R PA  CG+VG KPT+GR+   G++    ++  +G +  TVEDA ++  AI+G       + + P   F
Sbjct:   48 EAALHAAAGADISSPLAGIPIAVKDNINVLGQPTRCASRLLSPYVAPY--DATSIRLLKEAGGIPLGRTNMDEFAMGASGENSAYGITRNPEAPDRIPGGSSSGSAAAVASATAIAALGSDTGGSIRQPAGHCGIVGLKPTYGRVSRYGLVAFASSLDQIGPMTRTVEDAAILLQAISGHDRKDSTSANCPVPDF 240          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_THELT (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Thermotoga lettingae (strain ATCC BAA-301 / DSM 14385 / TMO) GN=gatA PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 5.898e-23
Identity = 64/171 (37.43%), Postives = 86/171 (50.29%), Query Frame = 2
Query:  251 GVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQPTVS 763
            G+ IA+KD I      TT G+K L    P   DA CV RL+  G  +VGKTN+ E   G+S     + V RNP+D   +                   ALG D GGSVR PAA CG+VGFKPT+G +   G++    ++  +G +  +V DA ++   I G  P    TVS
Sbjct:   51 GIPIAIKDNITTKNIRTTCGSKMLENYTP-PYDATCVKRLKNYGFAIVGKTNLDEFAMGSSTERSAFFVTRNPWDLDYVAGGSSGGSAAAVASGEVVAALGSDTGGSVRQPAAFCGIVGFKPTYGLVSRYGLVAFASSLDQIGPMTKSVRDAALIMEVIAGKDPMDSTTVS 220          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_EUBE2 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Eubacterium eligens (strain ATCC 27750 / VPI C15-48) GN=gatA PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 5.898e-23
Identity = 70/247 (28.34%), Postives = 114/247 (46.15%), Query Frame = 2
Query:   41 WTVLDYSKAYSSGDITPRMVAERFITAVRESSNPPMKMSFFINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQPTVSLPKVSF 781
            +T ++ +    +G+ T     E  I  + +S +   +++ ++  ++E  L  A ++    K G+    L GV  A+KD +      TT  +K L    P T  A  V RL+  GA+++GKTNM E   G++     +G  +NP +P  +                C  ALG D GGS+R PA+ CGVVG KPT+G +   G++    ++  +G L   V D   +  AI G       ++     SF
Sbjct:    6 YTAVELAAKIKAGETTATEAMEAVIAQIEKSED---ELNCYVTFDKEKALAAAKKADEDIKAGKLTGPLAGVPFAIKDNMCTEGMLTTCSSKILGNFVP-TYTADAVERLQNAGAVIIGKTNMDEFAMGSTTETSAFGATKNPRNPEHVPGGSSGGSAAAVAANECFAALGSDTGGSIRQPASYCGVVGLKPTYGTVSRYGLIAYGSSLDQIGPLCKDVTDCATIMEAIAGKDDKDSTSIGRDDYSF 248          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_CORJK (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Corynebacterium jeikeium (strain K411) GN=gatA PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 5.898e-23
Identity = 78/269 (29.00%), Postives = 123/269 (45.72%), Query Frame = 2
Query:   32 FHRWTVLDYSKAYSSGDITPRMVAERFITAVRESSNPPMKMSFFINNNEEDILKQATESTLRYKKGE-PISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQPTVS---LPKVSFPLLKSATSISAIKLG 826
            F  WT  + ++   + +I+ + V +  +  + E       +  F++   ++ L  A+        G+ P S L GV +A+KD    +  PTT  +K L        DA   MRLR  G  ++GKTNM E   G+S  N  YG  +NPYD  +                + P+A+G D GGS+R PAAL   VG KPT+G +   G++    ++   G  A TV D  +++  I G   +   + S    P V      ++  +S +KLG
Sbjct:   16 FTTWTAAELAEKIHAREISSQEVTQAHLDRIGEIDGD---IHAFLHVGADEALAAASNVDDALAAGDQPTSKLAGVPLALKDVFTTTDAPTTCASKMLEGYMS-PYDATVTMRLRAAGIPILGKTNMDEFAMGSSTENSAYGATKNPYDLERTPGGSGGGSSAALAAGMAPLAIGTDTGGSIRQPAALTNTVGVKPTYGTVSRYGLVACASSLDQGGPTARTVLDTALLHEVIAGHDANDSTSSSHAVAPVVEAAKQGASGDLSGVKLG 280          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA1_CLOAB (Glutamyl-tRNA(Gln) amidotransferase subunit A 1 OS=Clostridium acetobutylicum GN=gatA1 PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 5.898e-23
Identity = 71/234 (30.34%), Postives = 110/234 (47.01%), Query Frame = 2
Query:   71 SSGDITPRMVAERFITAVRESSNPPMKMSFFINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHK-VRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQPTVSLP 769
            S  ++    V   F+  + E      K++  +   +E+ +  A E   + + GE +S L GV +A+KD I       T  +K L   V P   DA  +  L+    +++GK NM E   G+S  N  + V++NP+   ++                 P++LG + GGSVR PA+ CG+VG KPT+GRI   GV+    T+  VG+ A  VED  ++   I G       TV  P
Sbjct:   16 SKKEVKVEEVTNSFLNRIEEVDE---KVNALLYVAKEEAVNTAKELDKKIESGESLSGLSGVPVAIKDNISVKNMQNTCASKILEGYVSPY--DATVIENLKKNNGVIIGKANMDEFAMGSSTENSAFKVSKNPWSLERVPGGSSGGSAVAVASLEAPISLGTETGGSVRQPASFCGLVGLKPTYGRISRYGVVAFGSTLDQVGMFARDVEDCALLTQNIAGLDKMDFTTVDTP 244          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_RHOFD (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) GN=gatA PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 7.703e-23
Identity = 78/268 (29.10%), Postives = 126/268 (47.01%), Query Frame = 2
Query:   35 HRWTVLDYSKAYSSGDITPRMVAERFITAVRESSNPPMKMSFFINNNEEDILKQA--TESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQPT-VSLPKVSFPLLKSAT-SISAIKLG 826
            H  TV   +    +  ++    A+ F+   + +++    +  F++ NEE  L+QA   +  L    G     L GV +A KD      + +T G++ L   R    DA  V +L   G + +GK N  E   G++  N  +G  RNP+D ++                L P A G D GGS+R PA+ CGV G KPT+GR    G++    ++   G +A T +D  ++ +A+ GP P +  T + LP   F   +S T SI  +++G
Sbjct:    8 HDLTVAQLASLLRARKVSALETAQHFLARAQANAS----LGAFLDFNEEVTLRQARAADLALAADSGGATPTLLGVPMAHKDIFVTRDFISTAGSRMLAGYRS-PFDATVVSKLAAQGVVTLGKLNCDEFAMGSANENSAFGPVRNPWDLTRTPGGSSGGSAAAVAARLLPAATGTDTGGSIRQPASFCGVTGIKPTYGRASRYGMVAFASSLDQAGPMARTAQDCALLLSAMCGPDPDRDSTSLDLPAEDF--TRSLTESIEGLRIG 268          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_METS3 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=gatA PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 7.703e-23
Identity = 69/259 (26.64%), Postives = 123/259 (47.49%), Query Frame = 2
Query:   47 VLDYSKAYSSGDITPRMVAERFITAVRESSNPPMKMSFFINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQPTVSLPKVSFPLLKSATSISAIKL 823
            V++   +  + ++T +   E FI  + E +    +++ F+  N+E  LKQA     +   GE +  L G++  +K  I+   Y  +  +K L      + +A  + ++     I++G TNM E  AG+S     +G  +NP  P +I               +C +ALG D GGS+R PA+ CGVVGFKPT+G +   G+L L+ ++  +G L+       +   AI+    ++  T+   +  F       S+  +K+
Sbjct:    3 VIEKLNSIQNKEMTAKENVENFIKVIDEKNE---ELNIFLEVNKESALKQAEAIDEKIANGEKVGFLSGLVFGIKANINVEDYIISAASKTLDNYFG-SYNATVIDKILAQDGIILGITNMDEFAAGSSTETSCFGPTQNPAAPGRIPGGSSGGSAAAVAAEMCDIALGSDTGGSIRNPASHCGVVGFKPTYGAVSRQGLLDLSMSLDQIGPLSNDTSGIALALNAISDYDETECTTLHGKRPDFTSALEEKSLEGMKI 257          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_METHJ (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=gatA PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 7.703e-23
Identity = 70/200 (35.00%), Postives = 98/200 (49.00%), Query Frame = 2
Query:  245 LDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQPTVSLPKVSFPLLKSATSISAIKLGKYDAWF 844
            L GV +AVKD I      TT  +K L    P   DA  V  L+  GA +VGKTNM E G GT+  N  YG   NP D  ++               L   A+G D GGS+R PAA CG+VG KPT+GR+   G++    ++  +G +A  V+    +Y+ I G       +V  P    P+    + I+ +K+G  D +F
Sbjct:   29 LSGVTVAVKDNISTKGIETTCASKILKGYIP-PYDAHVVTLLKNAGAAIVGKTNMDEFGMGTTTENSAYGPTLNPLDHQRVPGGSSGGSAAAVAAGLVDCAIGSDTGGSIRCPAAFCGIVGLKPTYGRVSRFGLIAYANSLEQIGPMARDVQTLSNLYSVIAGHDSRDATSVDKPYKHNPV----SDITGLKIGVPDEFF 223          
The following BLAST results are available for this feature:
BLAST of FC878075 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GATA_DESAA4.516e-2331.36Glutamyl-tRNA(Gln) amidotransferase subunit A OS=D... [more]
GATA_CLOK14.516e-2329.76Glutamyl-tRNA(Gln) amidotransferase subunit A OS=C... [more]
GATA_AKKM84.516e-2335.90Glutamyl-tRNA(Gln) amidotransferase subunit A OS=A... [more]
GATA_THELT5.898e-2337.43Glutamyl-tRNA(Gln) amidotransferase subunit A OS=T... [more]
GATA_EUBE25.898e-2328.34Glutamyl-tRNA(Gln) amidotransferase subunit A OS=E... [more]
GATA_CORJK5.898e-2329.00Glutamyl-tRNA(Gln) amidotransferase subunit A OS=C... [more]
GATA1_CLOAB5.898e-2330.34Glutamyl-tRNA(Gln) amidotransferase subunit A 1 OS... [more]
GATA_RHOFD7.703e-2329.10Glutamyl-tRNA(Gln) amidotransferase subunit A OS=R... [more]
GATA_METS37.703e-2326.64Glutamyl-tRNA(Gln) amidotransferase subunit A OS=M... [more]
GATA_METHJ7.703e-2335.00Glutamyl-tRNA(Gln) amidotransferase subunit A OS=M... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA35BB11RM1 IVIA1 Citrus clementina cDNA clone IC0AAA35BB11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878075 ID=FC878075; Name=FC878075; organism=Citrus clementina; type=EST; length=849bp
TCTGCCTCTGTCTTCAGAAAAGCAGCCGTTTTTCCATCGCTGGACTGTAT
TAGATTATTCAAAAGCCTACAGTTCCGGAGATATTACTCCTCGTATGGTA
GCAGAGCGGTTTATAACCGCAGTACGTGAGTCTTCAAACCCTCCAATGAA
AATGTCATTCTTCATTAACAACAATGAAGAAGATATTCTAAAGCAAGCTA
CAGAGTCGACTCTTCGGTATAAAAAAGGAGAGCCAATATCGGTTCTAGAT
GGAGTCCTAATTGCAGTCAAGGATGAAATTGATTGTTCTCCTTACCCAAC
TACAGGAGGCACCAAGTGGTTGCATAAAGTTAGACCTTGCACAGGTGATG
CATGCTGCGTTATGCGCCTCAGATTGTGCGGCGCCATACTTGTTGGGAAA
ACTAATATGCATGAGCTCGGGGCTGGAACAAGTGGGATAAATCCTCATTA
TGGGGTCGCTAGAAATCCATACGACCCCAGCAAAATCACTGGGGGTTCTT
CTAGTGGATCAGCAGCAGTGGTGGCTGCAGGATTGTGCCCTGTCGCCCTT
GGTGTTGATGGAGGAGGATCCGTGCGGATGCCTGCAGCTCTCTGTGGTGT
TGTTGGTTTTAAGCCAACTTTCGGGCGCATACCTCTTTCTGGTGTTCTTC
CACTGAACTGGACAGTAGGAATGGTTGGAATTTTAGCAGCCACTGTAGAA
GATGCATTGGTTGTTTATGCAGCTATTAATGGTCCACTTCCTTCCCAACA
GCCCACTGTTTCATTGCCAAAAGTATCGTTCCCACTGCTGAAGTCTGCAA
CATCAATATCAGCCATCAAATTGGGCAAGTATGATGCGTGGTTCAACGA
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