FC878075

Overview
NameFC878075
Unique NameFC878075
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length849
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_CUPTR (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Cupriavidus taiwanensis (strain R1 / LMG 19424) GN=gatA PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 7.703e-23
Identity = 68/232 (29.31%), Postives = 112/232 (48.28%), Query Frame = 2
Query:   65 AYSSGDITPRMVAERFITAVRESSNPPMKMSFFINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQPTV 760
            A ++  ++   +A  ++  + +++     ++ FI+ + E  L QA  +  R  +GE  + L GV +A KD      +  T G+K L        DA  V R+   G + +GKTNM E   G+S  N H+G  RNP+D  ++               L P A G D GGS+R PA+  G+ G KPT+GR+   G++    ++   G +A T ED  ++  A+ G  P    ++
Sbjct:   17 ALAARTVSAEELAREYLARIEQAA----ALNAFIHVDAELTLAQARAADERRARGEA-APLTGVPVAHKDVFVTRGWRATAGSKMLGNYES-PFDATVVERMAAAGMVTLGKTNMDEFAMGSSNENSHFGPVRNPWDAGRVPGGSSGGSAAAVAAGLAPAATGTDTGGSIRQPASFSGITGIKPTYGRVSRYGMIAFASSLDQGGPMAHTAEDCALLLNAMAGFDPKDSTSI 242          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_CHLAB (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Chlamydophila abortus GN=gatA PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 7.703e-23
Identity = 68/231 (29.44%), Postives = 109/231 (47.19%), Query Frame = 2
Query:   44 TVLDYSKAYSSGDITPRMVAERFITAVRESSNPPMKMSFFINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHK-VRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAING 733
            + L+   A  SG+ +   +A+ F   ++   N   ++  F++  EE   ++A     +  +GEP+  L GV I +KD I      TT  +K L   + P   DA  V R+     +++GK NM E   G++     +   +NP+  S +                CP+ALG D GGS+R PAA CGVVGFKP++G +   G++    ++  +G L   VED  +      G
Sbjct:    5 SALELRNAVVSGESSATAIAKYFYNRIKTEDN---QIGAFLSLCEERAYEKAAIIDAKVARGEPLGKLAGVPIGIKDNIHIRGLRTTCASKMLENYIAPF--DATVVERIEAEDGVILGKLNMDEFAMGSTTQYSAFHPTKNPWGLSCVPGGSSGGSAAAVSARFCPIALGSDTGGSIRQPAAFCGVVGFKPSYGAVSRYGLVAFGSSLDQIGPLTTVVEDVALAMDVFAG 230          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_ALCBS (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Alcanivorax borkumensis (strain SK2 / ATCC 700651 / DSM 11573) GN=gatA PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 1.006e-22
Identity = 70/238 (29.41%), Postives = 116/238 (48.74%), Query Frame = 2
Query:   35 HRWTVLDYSKAYSSGDITPRMVAERFITAVRESSNPPMKMSFFINNNEEDILKQA--TESTLRYKKGEPI--SVLDGVLIAVKDEIDCSPYPTTGGTKWLHK-VRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAING 733
            H  T+ +     ++GD + R + E F+  +++      +++ F+   EE  L QA   ++TL   +       +L G+ IA KD        T+ G+K L   + P T  A  V ++   GA+++GKTNM E   G+S    +YG  +NP+D  ++               L P A G D GGS+R PAAL  + G KPT+GR+   G++    ++   G +A + ED  ++  A+ G
Sbjct:    2 HTKTLTELKAGLAAGDFSSRELTEHFLARIKQYDG---ELNSFVTVTEEQALAQADAADATLATNRASSSVSGLLTGLPIAHKDIFCTEGVRTSCGSKMLDNFIAPYT--ATVVEKMAAEGAVMLGKTNMDEFAMGSSNETSYYGPVKNPWDLERVPGGSSGGAAACLGARLAPAATGTDTGGSIRQPAALNNITGLKPTYGRVSRWGMIAFASSLDQAGPMAQSAEDCALMLQAMAG 234          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_METCA (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Methylococcus capsulatus GN=gatA PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.314e-22
Identity = 66/195 (33.85%), Postives = 95/195 (48.72%), Query Frame = 2
Query:  152 MSFFINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHK-VRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAING 733
            ++ FI    E  L QA  +  R  KGE    L G+ IA KD        T+ G++ L   V P   DAC V R    GA+++GK NM E   G+S    +YG  +NP++ + +               L P A G D GGS+R PAA CG+ G KPT+GR+   G++    ++   G +A T ED  ++   + G
Sbjct:   38 LNSFITTTPEIALAQARAADERLAKGEA-GPLTGIPIAQKDIFCTKGVRTSCGSRMLDSFVSPY--DACVVERFNAAGAVMLGKLNMDEFAMGSSNETSYYGPVKNPWNTATVPGGSSGGSAAAVAARLVPGATGTDTGGSIRQPAAFCGITGLKPTYGRVSRWGMIAFASSLDQAGPMARTAEDCAIMLQIMAG 229          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_DESOH (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Desulfococcus oleovorans (strain DSM 6200 / Hxd3) GN=gatA PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.314e-22
Identity = 67/204 (32.84%), Postives = 106/204 (51.96%), Query Frame = 2
Query:  149 KMSFFINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQPTV 760
            K+  +I    E  L  A  +  R + G  I+ L G+ +AVKD I  +   TT  ++ L    P   DA  + +L+  GA++ GK NM E   G+S  +   G  +NP++ + I               +C  +LG D GGS+R PA+ CGVVG KPT+GR+   G++    ++  +G+LA  V D+ ++ +AI+G  PS   +V
Sbjct:   39 KVGAYITLARESALSAAAAADTRLQSGG-IAPLTGIPLAVKDLICTTGLRTTCASRMLETFMP-PYDATVIEKLKTQGAVITGKVNMDEFAMGSSTEHSALGSTKNPWNLACIPGGSSGGSAASVAADMCLGSLGSDTGGSIRQPASHCGVVGIKPTYGRVSRYGLVAFASSLDQIGVLAKDVTDSALLLSAISGHDPSDSTSV 240          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_DEIDV (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Deinococcus deserti (strain VCD115 / DSM 17065 / LMG 22923) GN=gatA PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.314e-22
Identity = 77/245 (31.43%), Postives = 122/245 (49.80%), Query Frame = 2
Query:   38 RWTVLDYSKAYSSGDITPRMVAERFITAVRESSNPPMKMSFFINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHK-VRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQPTVSLP 769
            ++T    ++A ++G+ TP+ + ++ +     +S     ++  ++ NE+    QA E + R   GE +  L GV + VKD I+ S   TT G++ L   V P T  A    RL   GA++VGK NM E   G+S  +   G   NP+D S++               L PV+LG D GGSVR PAAL GV G KPT+GR+   G++    ++  +G  A +  D  ++   + G  P    ++  P
Sbjct:    4 QFTATALARAVTAGETTPQALLDQAVARAEAAST----LNALVSLNEQ-AGAQAAEVSRRLAGGEALP-LAGVPVIVKDNINVSGTRTTCGSRILATYVSPYTATAA--QRLIDAGAVIVGKANMDEFAMGSSTESSASGPTLNPWDLSRVPGGSSGGSAVAVAANLTPVSLGSDTGGSVRQPAALTGVYGLKPTYGRVSRYGLVAYASSLDQIGPFARSAADLALLMNVVAGHDPRDATSLEAP 240          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_ARTAT (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Arthrobacter aurescens (strain TC1) GN=gatA PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.314e-22
Identity = 78/264 (29.55%), Postives = 126/264 (47.73%), Query Frame = 2
Query:   68 YSSGDITPRMVAERFITAVRES-------SNPPMKMSFFINNNEEDILKQATESTLRYKKG----EPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQPTVSLPKVSFPLLKSATSISAIKLG 826
            +S+ D+  ++ A R +TAV  +       ++   +++ F++ N E+ L  A E       G    E +  L GV IAVKD I     PTT G+K L        DA  V +LR     ++GKTN+ E   G+S  +  YG  RNP+D  +I                 P+ALG D GGS+R P A+ G VG KPT+G +   G + +  ++  +G ++ TV D+ ++   I G  P    +++ P           +++ +K+G
Sbjct:   11 HSAADLAAKL-ASREVTAVEVTQAHLDRIADVDGQVNAFLHVNSEEALAVAAEVDAARAAGGSAAEELHALAGVPIAVKDLIVTIGQPTTAGSKILEGWHS-PYDATVVKKLRAAKMPILGKTNLDEFAMGSSTEHSAYGPTRNPWDLDRIPGGSGGGSAAAVAAFEAPLALGTDTGGSIRQPGAVTGTVGVKPTYGAVSRYGAIAMASSLDQIGPVSRTVLDSALLQEVIGGHDPFDSTSLTDPFNDLVAAARVGNVAGMKIG 272          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_RALSO (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Ralstonia solanacearum GN=gatA PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.716e-22
Identity = 66/195 (33.85%), Postives = 98/195 (50.26%), Query Frame = 2
Query:  152 MSFFINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHK-VRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAING 733
            ++ FI+ + E  L QA  +  R   G+    L G+ IA KD      +  T G+K L   V P   DA  V RL   G + +GKTNM E   G+S  N H+G  +NP+D +++               L P A G D GGS+R PA+  G+ G KPT+GR+   G++    ++   G +A T ED  ++ +A+ G
Sbjct:   37 LNAFIHVDPEATLAQAQAADARLAAGDA-GPLAGIPIAHKDVFVTRGWRATAGSKMLDSYVSPF--DATVVERLAAAGMVTLGKTNMDEFAMGSSNENSHFGPVKNPWDVARVPGGSSGGSAAAVAADLAPAATGTDTGGSIRQPASFSGITGIKPTYGRVSRYGMIAFASSLDQGGPMARTAEDCALLLSAMAG 228          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_LEIXX (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Leifsonia xyli subsp. xyli GN=gatA PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.716e-22
Identity = 68/191 (35.60%), Postives = 98/191 (51.31%), Query Frame = 2
Query:  161 FINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAING 733
            F++   E  L+ A E   R   GE +    GV +A+KD +  +  P+T G+K L    P   DA  V +LR    + +GKTNM E   G+S  +  YG  RNP+D  +I                 P+ALG D GGS+R PAA+ G VG KPT+G +   G + L  ++  VG ++ TV DA +++  I G
Sbjct:   44 FLHVAGEKALRTAAEIDGRRASGEKLGPFAGVPVAIKDVLATNDMPSTSGSKILEGWLP-PYDATVVRKLREADLVPLGKTNMDEFAMGSSTEHSAYGPTRNPWDLERIPGGSGGGSAAAVSAFEAPLALGSDTGGSIRQPAAVTGSVGVKPTYGGVSRYGAIALASSLDQVGPVSRTVLDAGLLHDVIAG 233          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_ROSCS (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Roseiflexus castenholzii (strain DSM 13941 / HLO8) GN=gatA PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 2.241e-22
Identity = 70/245 (28.57%), Postives = 111/245 (45.31%), Query Frame = 2
Query:   35 HRWTVLDYSKAYSSGDITPRMVAERFITAVRESSNPPMKMSFFINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQPTVSLP 769
            ++ TV    +  + G+I+   + +  +T +        K+  F+  +      QA  +  R   G+   +L G+ + +KD I      TT  +K L    P   DA  V RL+  GA+++GK N  E   G+S  N  +   RNP++  ++                 P ALG D GGS+R PAALCG+ G KPT+GR+   G++    ++  +G +A TV D  +V   I G  P        P
Sbjct:    5 YQLTVAQAREMLARGEISSLELTDALLTRIAAVEP---KVRAFLVVDAAGARAQARAADARRAAGDASPLL-GIPMGIKDVISTQGLRTTCASKMLENYTPVY-DATAVARLKAAGAVILGKLNCDEFAMGSSTENSAFQQTRNPWNLERVPGGSSGGSAAAVAAGEAPAALGTDTGGSIRQPAALCGITGLKPTYGRVSRYGLVAFASSLDQIGPMARTVRDCAIVLRVIAGADPFDATCTDYP 244          
The following BLAST results are available for this feature:
BLAST of FC878075 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GATA_CUPTR7.703e-2329.31Glutamyl-tRNA(Gln) amidotransferase subunit A OS=C... [more]
GATA_CHLAB7.703e-2329.44Glutamyl-tRNA(Gln) amidotransferase subunit A OS=C... [more]
GATA_ALCBS1.006e-2229.41Glutamyl-tRNA(Gln) amidotransferase subunit A OS=A... [more]
GATA_METCA1.314e-2233.85Glutamyl-tRNA(Gln) amidotransferase subunit A OS=M... [more]
GATA_DESOH1.314e-2232.84Glutamyl-tRNA(Gln) amidotransferase subunit A OS=D... [more]
GATA_DEIDV1.314e-2231.43Glutamyl-tRNA(Gln) amidotransferase subunit A OS=D... [more]
GATA_ARTAT1.314e-2229.55Glutamyl-tRNA(Gln) amidotransferase subunit A OS=A... [more]
GATA_RALSO1.716e-2233.85Glutamyl-tRNA(Gln) amidotransferase subunit A OS=R... [more]
GATA_LEIXX1.716e-2235.60Glutamyl-tRNA(Gln) amidotransferase subunit A OS=L... [more]
GATA_ROSCS2.241e-2228.57Glutamyl-tRNA(Gln) amidotransferase subunit A OS=R... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA35BB11RM1 IVIA1 Citrus clementina cDNA clone IC0AAA35BB11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878075 ID=FC878075; Name=FC878075; organism=Citrus clementina; type=EST; length=849bp
TCTGCCTCTGTCTTCAGAAAAGCAGCCGTTTTTCCATCGCTGGACTGTAT
TAGATTATTCAAAAGCCTACAGTTCCGGAGATATTACTCCTCGTATGGTA
GCAGAGCGGTTTATAACCGCAGTACGTGAGTCTTCAAACCCTCCAATGAA
AATGTCATTCTTCATTAACAACAATGAAGAAGATATTCTAAAGCAAGCTA
CAGAGTCGACTCTTCGGTATAAAAAAGGAGAGCCAATATCGGTTCTAGAT
GGAGTCCTAATTGCAGTCAAGGATGAAATTGATTGTTCTCCTTACCCAAC
TACAGGAGGCACCAAGTGGTTGCATAAAGTTAGACCTTGCACAGGTGATG
CATGCTGCGTTATGCGCCTCAGATTGTGCGGCGCCATACTTGTTGGGAAA
ACTAATATGCATGAGCTCGGGGCTGGAACAAGTGGGATAAATCCTCATTA
TGGGGTCGCTAGAAATCCATACGACCCCAGCAAAATCACTGGGGGTTCTT
CTAGTGGATCAGCAGCAGTGGTGGCTGCAGGATTGTGCCCTGTCGCCCTT
GGTGTTGATGGAGGAGGATCCGTGCGGATGCCTGCAGCTCTCTGTGGTGT
TGTTGGTTTTAAGCCAACTTTCGGGCGCATACCTCTTTCTGGTGTTCTTC
CACTGAACTGGACAGTAGGAATGGTTGGAATTTTAGCAGCCACTGTAGAA
GATGCATTGGTTGTTTATGCAGCTATTAATGGTCCACTTCCTTCCCAACA
GCCCACTGTTTCATTGCCAAAAGTATCGTTCCCACTGCTGAAGTCTGCAA
CATCAATATCAGCCATCAAATTGGGCAAGTATGATGCGTGGTTCAACGA
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