FC878075

Overview
NameFC878075
Unique NameFC878075
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length849
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_FUSNN (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Fusobacterium nucleatum subsp. nucleatum GN=gatA PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 2.241e-22
Identity = 75/267 (28.09%), Postives = 124/267 (46.44%), Query Frame = 2
Query:   44 TVLDYSKAYSSGDITPRMVAERFITAVRESSNPPMKMSFFINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQPTVSLPKVSFPLLKSATSISAIKLGKYDAWF 844
            T  +    + S +++   +   F   + +  +   K+  F++  ++  L +A +   + K GE +  L G+ IA+KD I      +T  +K L        DA  V +L+   AI++G TNM E   G++     +    NP+D +++                 P++LG D GGSVR PA+ CGVVGFKPT+GR+   G++    ++  +G LA TVED  +    I G +     TVS  +V          I  +K+G    +F
Sbjct:   10 TAKELRDKFLSNELSAEEIVNSFYERIEKVED---KIKSFVSLRKDKALDEARKLDEKRKNGEKLGRLAGIPIAIKDNILMEGQKSTSCSKILENYIGIY-DATVVKKLKEEDAIIIGITNMDEFAMGSTTKTSFHHKTSNPWDLNRVPGGSSGGAAASVAAQEVPISLGSDTGGSVRQPASFCGVVGFKPTYGRVSRYGLMAFASSLDQIGTLAKTVEDIAICMNVIAG-VDDYDATVSKKEVPDYTEFLNKDIKGLKIGLPKEYF 271          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_CHRSD (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Chromohalobacter salexigens (strain DSM 3043 / ATCC BAA-138 / NCIMB 13768) GN=gatA PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 2.241e-22
Identity = 78/273 (28.57%), Postives = 127/273 (46.52%), Query Frame = 2
Query:   35 HRWTVLDYSKAYSSGDITPRMVAERFITAVRESSNPPMKMSFFINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHK-VRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQPTVS--LPKVSFPLLKSATSISAIKLGKYDAWF 844
            H  T+ + +    +G+ + R + +  +  ++        ++ FI+   E  L  A  +      G+  + L G+ +A+KD        T+ G+K L   V P   DA  V ++R  G + +GKTNM E   G+S  N  YG  +NP+D S +               L P ALG D GGS+R PAA CG+ G KPT+GR+   G++    ++   G +A T  D  ++   I G       +V+  +P  S  L    TS++ +K+G    +F
Sbjct:    2 HDKTLTELAAGLRAGEFSSRELCQSALDRIQRLDGD---LNSFISVTAEQALADADAADQARASGDA-AALAGLPLALKDIFCTQGVRTSCGSKMLDSFVAPY--DATVVEKIRQAGGVSLGKTNMDEFAMGSSNENSFYGPVKNPWDLSAVPGGSSGGSAAAVAAGLVPAALGTDTGGSIRQPAAFCGITGLKPTYGRVSRYGMVAYASSLDQGGPMARTAADCALLLETIAGHDVRDSTSVARVVPDYSAEL---DTSLAGLKIGLPKEYF 265          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_RALEJ (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Ralstonia eutropha (strain JMP134) GN=gatA PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.927e-22
Identity = 65/223 (29.15%), Postives = 108/223 (48.43%), Query Frame = 2
Query:   65 AYSSGDITPRMVAERFITAVRESSNPPMKMSFFINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAING 733
            A ++  ++   +A  ++  + ++      ++ F + + E  L QA E+  R  +GE  ++L GV +A KD      +  T G+K L        DA  V R+   G + +GKTNM E   G+S  N  +G  RNP+D  ++               L P A G D GGS+R P++  G+ G KPT+GR+   G++    ++   G +A T ED  ++  A+ G
Sbjct:   17 ALAARSVSAEELARTYLARIEQAG----ALNAFTHVDAERTLAQAREADARRARGEA-TLLTGVPVAHKDVFVTRGWRATAGSKMLANYES-PFDATVVERMAAAGMVTLGKTNMDEFAMGSSNENSFFGAVRNPWDTDRVPGGSSGGSAAAVAAGLAPAATGTDTGGSIRQPSSFSGITGIKPTYGRVSRYGMIAFASSLDQGGPMAHTAEDCALLLNAMAG 233          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_PROM2 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Prochlorococcus marinus (strain MIT 9215) GN=gatA PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.927e-22
Identity = 66/226 (29.20%), Postives = 111/226 (49.12%), Query Frame = 2
Query:  149 KMSFFINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQPTVSLPKVSFPLLKSATSISAIKLG 826
            +++ +I   +++ ++QA       +  E +  L G+ IA+KD I      TT  +K L    P   ++    +L   G I +GKTN+ E   G+S     +GV  NP+D +++                C  A+G D GGS+R PA+ CGVVG KPT+GR+   G++    ++  +G +  TV DA  +  +I+G  P     +  P  ++ L     SI+ +K+G
Sbjct:   34 EINSYICTTKDNAIEQAENIDKLIQNKEKLPPLAGIPIAIKDNICTKGVATTCASKMLKSFVP-PYESTASSKLWSSGGICLGKTNLDEFAMGSSTETSLFGVTSNPWDINRVPGGSSGGSAASVAAGFCAAAIGSDTGGSIRQPASFCGVVGLKPTYGRVSRWGLVAFASSLDQIGPITNTVSDAAEILYSISGKDPFDSTCLDKPVPNY-LNDLNKSINGLKIG 257          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_SYNSC (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Synechococcus sp. (strain CC9605) GN=gatA PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 3.823e-22
Identity = 73/263 (27.76%), Postives = 125/263 (47.53%), Query Frame = 2
Query:   44 TVLDYSKAYSSGDITPRMVAERFITAVRESSNPPMKMSFFINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQPTV--SLPKVSFPLLKSATSISAIKLG 826
            T+  + +   SG+++ R + ++ +  + ESS P   ++ F+    +    +A+        GE +  L G+ +A+KD +      TT  ++ L +  P   ++    RL   G +LVGKTN+ E   G S     +G  +NP++ + +                C  +LG D GGS+R PA+ CGVVG KPT+GR+   G++    ++  VG  A +V D   +   I GP P     +  ++P  S  L   + SI  +K+G
Sbjct:    7 TISAWRQQLQSGEVSSRELVDQHLKRL-ESSEP--SLNAFVEVTADQARAEASRIDEARAAGEALGPLAGLPLAIKDNLCTKGVRTTCSSRMLEQFVP-PYESTVTERLWQAGGVLVGKTNLDEFAMGGSTETSAFGATQNPWNTAHVPGGSSGGSAAAVAAGSCVASLGSDTGGSIRQPASFCGVVGLKPTYGRVSRWGLVAFASSLDQVGPFAGSVADVAELLQVIAGPDPRDSTCLDAAVPVFSDGL---SQSIKGLKVG 262          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_STAS1 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=gatA PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 3.823e-22
Identity = 70/218 (32.11%), Postives = 108/218 (49.54%), Query Frame = 2
Query:   80 DITPRMVAERFITAVRESSNPPMKMSFFINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAING 733
            +ITP  V      A+ E+ +P +K   F+  ++E+ +K+A E      K +    L G+ + +KD I      TT  +K L    P   ++  + +LR   A+L+GK NM E   G S    +Y    NP+D + +               L P +LG D GGS+R PAA CG+VG KPT+GR+   G++    ++  +G L  TV+D  +V  AI G
Sbjct:   19 EITPSKVVSDIYDAIEET-DPTIKS--FLALDKENAIKKAQELDELQAKDQMEGKLFGIPMGIKDNIITEGVETTCASKMLEGFVPIY-ESTVMNKLRNEQAVLIGKLNMDEFAMGGSTETSYYKKTVNPFDHTAVPGGSSGGSAAAVAAGLVPFSLGSDTGGSIRQPAAYCGIVGLKPTYGRVSRFGLVAFASSLDQIGPLTRTVKDNALVLEAITG 232          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_SACD2 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM 17024) GN=gatA PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 3.823e-22
Identity = 70/219 (31.96%), Postives = 106/219 (48.40%), Query Frame = 2
Query:   59 SKAYSSGDITPRMVAERFITAVRESSNPPMKMSFFINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVV 715
            +K++SS +IT     + F+  ++       + + FI   EE  L QAT +  R   G+    L GV +A KD    +   T+ G+K L    P   DA  V      G +++GKTNM E   G+S    +YG  +NP+D + +               L P A   D GGS+R PAALCG+ G KPT+GR+   G++    ++   G +  T EDA ++
Sbjct:   15 NKSFSSVEIT-----QHFLNRIKTLDT---EYNSFITLTEEQALAQATAADARLAAGDA-PALCGVPLAHKDIFCTNGVRTSCGSKMLDNFVP-PYDATVVTNYSQDGVVILGKTNMDEFAMGSSNETSYYGPVKNPWDTNCVPGGSSGGSAAAVAARLVPGATATDTGGSIRQPAALCGITGIKPTYGRVSRWGMIAFASSLDQAGTMTRTAEDAALM 223          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_MOOTA (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Moorella thermoacetica (strain ATCC 39073) GN=gatA PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 3.823e-22
Identity = 70/228 (30.70%), Postives = 108/228 (47.37%), Query Frame = 2
Query:  149 KMSFFINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQPTVSLPKVSFPLLKSA--TSISAIKLG 826
            ++  ++    E  L++A        +GE +  L GV +A+KD +      TT  ++ L    P   DA  V RL+  GA+++GK NM E   G+S  N  +   RNP+D  ++                   ALG D GGS+R PA+ CGVVG KPT+GR+   G++    ++  +G +   V D  +V  AI G  P    +  LP    P  +SA    +  +K+G
Sbjct:   39 RVQAYLTRTAEQALEEARAVDAARARGETLGPLAGVPMALKDNLCTEGVRTTCSSRMLADWVP-PYDATVVRRLKEAGAVMLGKLNMDEFAMGSSTENSSFFPTRNPWDLERVPGGSSGGAVAAVAAGEAYFALGSDTGGSIRQPASFCGVVGMKPTYGRVSRYGLVAFASSLDQIGPITRDVTDCALVLEAIAGHDPLDSTSADLP---VPDYRSALKPEVKGLKIG 262          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_JANMA (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Janthinobacterium sp. (strain Marseille) GN=gatA PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 3.823e-22
Identity = 73/250 (29.20%), Postives = 118/250 (47.20%), Query Frame = 2
Query:   35 HRWTVLDYSKAYSSGDITPRMVAERFITAVRESSNPPMKMSFFINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHK-VRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQPTVSLPKVSF 781
            H  T+ + S    S  I+   +A+ F+  + +S      ++ F++ +    LK+A  +  R   G+  +VL G+ IA KD      + +T G+K L   V P   DA  V + +  G + +GK N  E   G+S  N ++G  +NP+D + I               L P +   D GGS+R PAALCGV G KPT+G +   G++    ++   G +A T ED  ++  A+ G  P    ++   K  F
Sbjct:    2 HTKTLKELSALLHSKQISATELAQLFLDRIAQSD-----LNAFLHVDPALTLKEAALADQRLASGDT-TVLTGIPIAHKDIFVTRDWRSTAGSKMLENYVSPF--DATVVEQFKQAGMVHLGKLNCDEFAMGSSNENSYFGAVKNPWDKAAIPGGSSGGSAAAIAARLTPASTATDTGGSIRQPAALCGVTGIKPTYGSVSRFGMIAFASSLDQGGPIAKTAEDCGLLLNAMTGFDPRDSTSIERDKEDF 243          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_COREF (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Corynebacterium efficiens GN=gatA PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 3.823e-22
Identity = 73/231 (31.60%), Postives = 107/231 (46.32%), Query Frame = 2
Query:   44 TVLDYSKAYSSGDITPRMVAERFITAVRESSNPPMKMSFFINNNEEDILKQATESTLRYKKGE-PISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAING 733
            T  + +    S ++T R V +  +  + E      ++  F++  EE  L  A         GE P S L GV +A+KD +  +  PTT  +K L        DA    +LR  G  ++GKTNM E   G+S  N  YG  RNP+D  +                  P+A+G D GGS+R PAAL   VG KPT+G +   G++    ++  VG  A TV D  +++  I G
Sbjct:   18 TAAELAGLIHSREVTSREVTQAHLDRINEVDG---EIHAFLHVGEEAALAAADAVDKALDAGEAPASALAGVPLALKDALVTTDAPTTAASKILEGYMS-PYDATVTRKLREAGIPILGKTNMDEFAMGSSTENSAYGATRNPWDLERTPGGSGGGSSAALASGEAPLAIGTDTGGSIRQPAALTNTVGVKPTYGTVSRYGLIACASSLDQVGPTARTVLDTALLHEVIAG 244          
The following BLAST results are available for this feature:
BLAST of FC878075 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GATA_FUSNN2.241e-2228.09Glutamyl-tRNA(Gln) amidotransferase subunit A OS=F... [more]
GATA_CHRSD2.241e-2228.57Glutamyl-tRNA(Gln) amidotransferase subunit A OS=C... [more]
GATA_RALEJ2.927e-2229.15Glutamyl-tRNA(Gln) amidotransferase subunit A OS=R... [more]
GATA_PROM22.927e-2229.20Glutamyl-tRNA(Gln) amidotransferase subunit A OS=P... [more]
GATA_SYNSC3.823e-2227.76Glutamyl-tRNA(Gln) amidotransferase subunit A OS=S... [more]
GATA_STAS13.823e-2232.11Glutamyl-tRNA(Gln) amidotransferase subunit A OS=S... [more]
GATA_SACD23.823e-2231.96Glutamyl-tRNA(Gln) amidotransferase subunit A OS=S... [more]
GATA_MOOTA3.823e-2230.70Glutamyl-tRNA(Gln) amidotransferase subunit A OS=M... [more]
GATA_JANMA3.823e-2229.20Glutamyl-tRNA(Gln) amidotransferase subunit A OS=J... [more]
GATA_COREF3.823e-2231.60Glutamyl-tRNA(Gln) amidotransferase subunit A OS=C... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA35BB11RM1 IVIA1 Citrus clementina cDNA clone IC0AAA35BB11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878075 ID=FC878075; Name=FC878075; organism=Citrus clementina; type=EST; length=849bp
TCTGCCTCTGTCTTCAGAAAAGCAGCCGTTTTTCCATCGCTGGACTGTAT
TAGATTATTCAAAAGCCTACAGTTCCGGAGATATTACTCCTCGTATGGTA
GCAGAGCGGTTTATAACCGCAGTACGTGAGTCTTCAAACCCTCCAATGAA
AATGTCATTCTTCATTAACAACAATGAAGAAGATATTCTAAAGCAAGCTA
CAGAGTCGACTCTTCGGTATAAAAAAGGAGAGCCAATATCGGTTCTAGAT
GGAGTCCTAATTGCAGTCAAGGATGAAATTGATTGTTCTCCTTACCCAAC
TACAGGAGGCACCAAGTGGTTGCATAAAGTTAGACCTTGCACAGGTGATG
CATGCTGCGTTATGCGCCTCAGATTGTGCGGCGCCATACTTGTTGGGAAA
ACTAATATGCATGAGCTCGGGGCTGGAACAAGTGGGATAAATCCTCATTA
TGGGGTCGCTAGAAATCCATACGACCCCAGCAAAATCACTGGGGGTTCTT
CTAGTGGATCAGCAGCAGTGGTGGCTGCAGGATTGTGCCCTGTCGCCCTT
GGTGTTGATGGAGGAGGATCCGTGCGGATGCCTGCAGCTCTCTGTGGTGT
TGTTGGTTTTAAGCCAACTTTCGGGCGCATACCTCTTTCTGGTGTTCTTC
CACTGAACTGGACAGTAGGAATGGTTGGAATTTTAGCAGCCACTGTAGAA
GATGCATTGGTTGTTTATGCAGCTATTAATGGTCCACTTCCTTCCCAACA
GCCCACTGTTTCATTGCCAAAAGTATCGTTCCCACTGCTGAAGTCTGCAA
CATCAATATCAGCCATCAAATTGGGCAAGTATGATGCGTGGTTCAACGA
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