FC878075

Overview
NameFC878075
Unique NameFC878075
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length849
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_PROM9 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Prochlorococcus marinus (strain MIT 9312) GN=gatA PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 4.993e-22
Identity = 71/234 (30.34%), Postives = 116/234 (49.57%), Query Frame = 2
Query:  128 ESSNPPMKMSFFINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHK-VRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQPTVSLPKVSFPLLKSATSISAIKLG 826
            +S +P  +++ +I   +++ ++QA       +  E +  L G+ IA+KD I      TT  +K L   + P    A    +L   G I +GKTN+ E   G+S     +GV  NP+D S++               LC  A+G D GGS+R PA+ CGVVG KPT+GR+   G++    ++  +G +  TV DA  +  +I+G  P     +  P  ++ L+    SI  +K+G
Sbjct:   29 DSDDP--EINSYICTTKDNAIQQAENIDKLIQNEEILPPLAGMPIAIKDNICTKGVHTTCASKMLKGFIAPYESTASD--KLWSSGGICLGKTNLDEFAMGSSTETSVFGVTSNPWDISRVPGGSSGGSAASVAAGLCSAAIGSDTGGSIRQPASFCGVVGLKPTYGRVSRWGLVAFASSLDQIGPITNTVSDAAEILYSISGKDPLDSTCLDQPVPNY-LINLNKSIKDLKIG 257          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_NATPD (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=gatA PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 4.993e-22
Identity = 70/178 (39.33%), Postives = 89/178 (50.00%), Query Frame = 2
Query:  200 TESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAING 733
            TE T+      P   LDGV +AVKD I      TT G++ L    P   DA  V RLR  GA +VGKTNM E G GT+     +G   NP    ++                  +ALG D GGSVR PAA CGVVG KPT+G +   G++    ++  +G LA TVE+A  +   I G
Sbjct:    8 TEETIEPTDDGP---LDGVTVAVKDNISTDGVRTTCGSEMLADYVP-PYDATVVERLRDAGATIVGKTNMDEFGMGTTTETSAFGPTENPAAEGRVPGGSSGGSAAAVAAGDADLALGSDTGGSVRCPAAFCGVVGIKPTYGLVSRYGLVAYANSLEQIGPLAPTVEEAAELLDVIAG 181          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_LYSSC (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Lysinibacillus sphaericus (strain C3-41) GN=gatA PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 4.993e-22
Identity = 73/212 (34.43%), Postives = 103/212 (48.58%), Query Frame = 2
Query:  161 FINNNEEDILKQATE-STLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAING--PLPSQQPTVSLPKVSFPL 787
            F+ +NEE    QA E   + +++  P   L G+ I VKD I      TT  +K L    P   DA  V +LR  G I VGK NM E   G+S  N +Y   +NP++ + +                 P +LG D GGS+R PAA CGVVG KPT+GR+   G++    ++  +G +   VED  ++  AI G  P  S    V +P  +  L
Sbjct:   43 FLASNEEKATAQAAEMDKVPFEERGP---LFGLPIGVKDNIVTEGLETTCASKILEGFMPIY-DATVVNKLREAGMITVGKLNMDEFAMGSSNENSYYKTTKNPWNLNHVPGGSSGASAASVAAGEVPFSLGSDTGGSIRQPAAYCGVVGMKPTYGRVSRFGLVAFASSLDQIGPITRNVEDNALLLEAIAGLDPNDSTSADVEVPNYAAAL 250          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_GEOBB (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Geobacter bemidjiensis (strain Bem / ATCC BAA-1014 / DSM 16622) GN=gatA PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 4.993e-22
Identity = 70/232 (30.17%), Postives = 110/232 (47.41%), Query Frame = 2
Query:  149 KMSFFINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQPTVSLPKVSFPLLKSATSISAIKLGKYDAWF 844
            +++ +I    E  L QA ++  R   GE I+ L G+ + +KD        TT G++ L    P   D   V +L+  GA++VGK N  E   G+S  + ++G  +NP+D S                      LG D GGS+R PA+ CG VG KPT+GR+   GV+    ++  VG L   V D+ ++  A+ G  P    +V+ P   + +   A  +  IK+G    +F
Sbjct:   39 QVNAYITVTPEQALVQAEDADRRIAAGE-IAPLTGIPVGLKDIFVTKGIRTTCGSRILENFVP-PYDGTAVAKLKEQGAVIVGKLNQDEFAMGSSNESSYFGPCKNPWDLSCTPGGSSGGSAAAIAARTATATLGTDTGGSIRQPASHCGCVGLKPTYGRVSRYGVIAYASSLDQVGPLTRDVTDSALLLGAVAGYDPMDSTSVNTPVPDY-VASLAKGVKGIKIGLPKQYF 267          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_CHLCH (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Chlorobium chlorochromatii (strain CaD3) GN=gatA PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 4.993e-22
Identity = 76/248 (30.65%), Postives = 114/248 (45.97%), Query Frame = 2
Query:  104 ERFITAVRESSNPPMKMSFFINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQPTVSLPKV-SFPLLKSATSISAIKLGKYDAWF 844
            E  + +  E  +   + + FI    E  L++A     +  +G  +  L G+ +A+KD I       T  +K L        DA  ++RL    AI +GKTNM E   G+S  N  +G   NP+D S++               L  VALG D GGSVR PA  C +VG KPT+GRI   G++    +   +G+LA T  DA +V   + G    +  T S  +V S+  +    S   +K+G    +F
Sbjct:   21 EEVVRSYLERIDAAREDNIFITVFHERALERARMLDRKLAEGGTVGKLFGLPMAIKDNIAMKGERLTCASKILENYESVF-DATVILRLEAEDAIFLGKTNMDEFAMGSSNENSAFGNVPNPFDKSRVPGGSSGGSAAAVAANLALVALGSDTGGSVRQPAGFCDIVGLKPTYGRISRFGLVAFASSFDQIGVLARTCGDAALVLEVMAGK-DERDATSSAHQVDSYHSMMERVSPEGLKIGVPQEFF 266          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_SULTO (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Sulfolobus tokodaii GN=gatA PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 6.521e-22
Identity = 62/204 (30.39%), Postives = 103/204 (50.49%), Query Frame = 2
Query:  149 KMSFFINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQPTV 760
            K+  FI   +++ +K+     L+  KG+    L G+LIA+KD I      TT  ++ L    P   DA  + +L+  GA+++GKTNM E   G++    ++G  RNP+D  +                +  +ALG D GGS+R PAA   V G KP++G +   G++    ++  +G +A   ED  ++Y+ I+G  P    T+
Sbjct:   37 KIKAFITIRDKEEVKREVREKLKNPKGK----LSGILIAIKDNISTKGIRTTCASRMLEDYVP-PYDATVIEKLKQEGAVILGKTNMDEFAMGSTTETSYFGPTRNPWDLERTPGGSSGGSGAALAAGIVDIALGSDTGGSIRAPAAYNAVFGLKPSYGTVSRFGLVAYANSLEQIGPMAKNAEDLALLYSIISGDDPKDATTI 235          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_PROMS (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Prochlorococcus marinus (strain AS9601) GN=gatA PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 6.521e-22
Identity = 68/227 (29.96%), Postives = 109/227 (48.02%), Query Frame = 2
Query:  149 KMSFFINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHK-VRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQPTVSLPKVSFPLLKSATSISAIKLG 826
            K++ +I   +++ + QA +     +  E +  L G+ IA+KD I      TT  +  L   V P    A    +L   G I +GKTN+ E   G+S     +GV  NP+D +++                C  A+G D GGS+R PA+ CGVVG KPT+GR+   G++    ++  +G +  TV DA  +  +I+G  P     +  P  ++ L     SI  +K+G
Sbjct:   34 KINSYICTTKDNAIAQAEDIDKLIQNNEKLPPLAGMPIAIKDNICTKGVATTCASNMLKNFVAPYESTASS--KLWSSGGICLGKTNLDEFAMGSSTETSVFGVTSNPWDINRVPGGSSGGSAASVAAGFCAAAIGSDTGGSIRQPASFCGVVGLKPTYGRVSRWGLVAFASSLDQIGPITNTVSDAAEILHSISGKDPFDSTCLDKPVPNY-LTDLNKSIKGLKIG 257          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_METI4 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Methylacidiphilum infernorum (isolate V4) GN=gatA PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 6.521e-22
Identity = 74/249 (29.72%), Postives = 114/249 (45.78%), Query Frame = 2
Query:   80 DITPRMVAERFITAVRESSNPPMKMSFFINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQPTVSLPKVSFPLLKSATSISAIKLG 826
            +++P  V E  +  + E      K+  +I  N E  L+ +       KK +    L GV +A+KD I+    P    ++ L        D+  + +L+  GAIL+G+TNM E   G+S  N   G+ RNP++  ++                   ALG D GGS+R PAA CG VG KPT+GR+   G+     ++  +G +  TVEDA ++   I+G  P    +  LP   F  L     +    LG
Sbjct:   19 EVSPLEVVENLLCRIAEVDP---KIFAYIYLNHERALEAS-------KKADISLPLGGVPVAIKDNINVLGEPCRCASRILEGYL-APYDSTVIEKLKKAGAILLGRTNMDEFAMGSSTENSSVGITRNPWNTERVPGGSSGGSAAAVAAHEAFCALGSDTGGSIRQPAAFCGCVGLKPTYGRVSRYGLTAFASSLDQIGPITKTVEDAALLLEVISGFDPFDNTSEKLPVPRFSELLENRPLKDFVLG 256          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_DEIGD (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Deinococcus geothermalis (strain DSM 11300) GN=gatA PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 6.521e-22
Identity = 76/248 (30.65%), Postives = 118/248 (47.58%), Query Frame = 2
Query:   44 TVLDYSKAYSSGDITPRMVAERFITAVRESSNPPMKMSFFINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWL-HKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQPTVSLPKVSFP 784
            T  D ++A  + + TP+ + E    A R  +     ++  I+ N+    +QA    +R   GE +  L GV I VKD ++     TT G++ L + V P   DA  V RL   GA+++GK NM E   G+S  +  +G   NP+D  ++               L PVALG D GGSVR PAA  G+ G KPT+GR+   G++    ++  +G  A +  D  ++   + G  P    ++  P    P
Sbjct:    6 TATDLARAVQARETTPQALLE----AARRRAEAARDLNALISLNDRAD-EQAARVQVRLDAGETLP-LAGVPIVVKDNLNVIGTRTTCGSRILANYVSPY--DATAVERLTGAGAVIIGKANMDEFAMGSSTESSAWGPTLNPWDRERVPGGSSGGSAVAVAANLTPVALGSDTGGSVRQPAAFTGIYGLKPTYGRVSRYGLVAYASSLDQIGPFARSAADLALLMNVLAGHDPRDATSLDAPPAFRP 245          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_CENSY (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Cenarchaeum symbiosum GN=gatA PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 6.521e-22
Identity = 78/239 (32.64%), Postives = 110/239 (46.03%), Query Frame = 2
Query:   44 TVLDYSKAYSSGDITPRMVAERFITAVRESSNPPMKMSFFINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQPTV 760
            ++++Y +   SG  T     E F     E +     +  +I  NE+  L +A     R KKGE +    G  IAVKD I      TT  +K L        DA  V RL    AI+ GKTNM E   G +     YG +RNP++                    C  +LG D GGSVR PA+ CG+VGFKPT+G +   G++    ++  +G +  TVEDA  +   I+G  P+   T+
Sbjct:    5 SLVEYVREVGSGGTT----CEEFTAGAIERTKK-QGLDAYITLNEK-ALDEARRIDSRIKKGEKVGRCLGAPIAVKDNICVRGMRTTCASKMLEGYES-PYDATVVTRLLAEDAIITGKTNMDEFAMGLTTEFSAYGPSRNPWNKECTPGGSSGGSAAAVGGLECIASLGSDTGGSVRNPASFCGMVGFKPTYGLVSRYGLVSYANSIEQIGPITRTVEDAAFMMDVISGADPNDATTI 236          
The following BLAST results are available for this feature:
BLAST of FC878075 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GATA_PROM94.993e-2230.34Glutamyl-tRNA(Gln) amidotransferase subunit A OS=P... [more]
GATA_NATPD4.993e-2239.33Glutamyl-tRNA(Gln) amidotransferase subunit A OS=N... [more]
GATA_LYSSC4.993e-2234.43Glutamyl-tRNA(Gln) amidotransferase subunit A OS=L... [more]
GATA_GEOBB4.993e-2230.17Glutamyl-tRNA(Gln) amidotransferase subunit A OS=G... [more]
GATA_CHLCH4.993e-2230.65Glutamyl-tRNA(Gln) amidotransferase subunit A OS=C... [more]
GATA_SULTO6.521e-2230.39Glutamyl-tRNA(Gln) amidotransferase subunit A OS=S... [more]
GATA_PROMS6.521e-2229.96Glutamyl-tRNA(Gln) amidotransferase subunit A OS=P... [more]
GATA_METI46.521e-2229.72Glutamyl-tRNA(Gln) amidotransferase subunit A OS=M... [more]
GATA_DEIGD6.521e-2230.65Glutamyl-tRNA(Gln) amidotransferase subunit A OS=D... [more]
GATA_CENSY6.521e-2232.64Glutamyl-tRNA(Gln) amidotransferase subunit A OS=C... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA35BB11RM1 IVIA1 Citrus clementina cDNA clone IC0AAA35BB11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878075 ID=FC878075; Name=FC878075; organism=Citrus clementina; type=EST; length=849bp
TCTGCCTCTGTCTTCAGAAAAGCAGCCGTTTTTCCATCGCTGGACTGTAT
TAGATTATTCAAAAGCCTACAGTTCCGGAGATATTACTCCTCGTATGGTA
GCAGAGCGGTTTATAACCGCAGTACGTGAGTCTTCAAACCCTCCAATGAA
AATGTCATTCTTCATTAACAACAATGAAGAAGATATTCTAAAGCAAGCTA
CAGAGTCGACTCTTCGGTATAAAAAAGGAGAGCCAATATCGGTTCTAGAT
GGAGTCCTAATTGCAGTCAAGGATGAAATTGATTGTTCTCCTTACCCAAC
TACAGGAGGCACCAAGTGGTTGCATAAAGTTAGACCTTGCACAGGTGATG
CATGCTGCGTTATGCGCCTCAGATTGTGCGGCGCCATACTTGTTGGGAAA
ACTAATATGCATGAGCTCGGGGCTGGAACAAGTGGGATAAATCCTCATTA
TGGGGTCGCTAGAAATCCATACGACCCCAGCAAAATCACTGGGGGTTCTT
CTAGTGGATCAGCAGCAGTGGTGGCTGCAGGATTGTGCCCTGTCGCCCTT
GGTGTTGATGGAGGAGGATCCGTGCGGATGCCTGCAGCTCTCTGTGGTGT
TGTTGGTTTTAAGCCAACTTTCGGGCGCATACCTCTTTCTGGTGTTCTTC
CACTGAACTGGACAGTAGGAATGGTTGGAATTTTAGCAGCCACTGTAGAA
GATGCATTGGTTGTTTATGCAGCTATTAATGGTCCACTTCCTTCCCAACA
GCCCACTGTTTCATTGCCAAAAGTATCGTTCCCACTGCTGAAGTCTGCAA
CATCAATATCAGCCATCAAATTGGGCAAGTATGATGCGTGGTTCAACGA
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