FC878075

Overview
NameFC878075
Unique NameFC878075
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length849
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_MARAV (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Marinobacter aquaeolei (strain ATCC 700491 / DSM 11845 / VT8) GN=gatA PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 8.517e-22
Identity = 73/246 (29.67%), Postives = 113/246 (45.93%), Query Frame = 2
Query:   35 HRWTVLDYSKAYSSGDITPRMVAERFITAVRESSNPPMKMSFFINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPS----KITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQPTV 760
            H  +V + S+   SG I+   + ++F+  ++       K + FI  ++E  L +A  +      G+  +V  GV  A KD    S   T+ G+K L    P   DA      +  GA+ +GKTNM E   G+S  +  YG   NP+  S    ++               L P A G D GGS+R PAALCG+ G KPT+GR+   G++    ++   G +A T EDA ++   + G  P     +
Sbjct:    2 HNKSVAELSRELESGRISSVELTQQFLDRLKTEDG---KYNSFITISDEQALAEARAADEMRAAGKA-TVWTGVPFAHKDIFCTSGIRTSCGSKMLDNFVP-PYDATVTANFKAAGAVCLGKTNMDEFAMGSSNESSFYGAVTNPWGLSGGDKRVPGGSSGGSAAAVAARLVPAATGTDTGGSIRQPAALCGITGLKPTYGRVSRYGMIAFASSLDQGGPMARTAEDAALMLNVMAGHDPKDSTCI 242          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_CHLPB (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Chlorobium phaeobacteroides (strain BS1) GN=gatA PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 8.517e-22
Identity = 75/261 (28.74%), Postives = 118/261 (45.21%), Query Frame = 2
Query:   62 KAYSSGDITPRMVAERFITAVRESSNPPMKMSFFINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQPTVSLPKVSFPLLKSATSISAIKLGKYDAWF 844
            K   S +I+   V   ++  +R++    + ++ F     +  L++A E   + + GE    L G+ +AVKD +       T  +K L        +A  V RL    A+ +GK NM E   G+S  N  +G   NPYD S++               L  VALG D GGSVR PA  C VVG KPT+GRI   G++    +   +GIL+   +DA +V   I G   +   +       +     + S+  +K+G  + +F
Sbjct:   11 KRLLSREISCETVVLDYLERIRKNHERNVYITVF----NDQALQRAKELDRKLEAGEQPGRLFGLPMAVKDNLSVKDASLTCASKILEGYT-AVYNATAVERLLKEDAVFLGKVNMDEFAMGSSNENSAFGPVPNPYDDSRVPGGSSGGSAAAVAGDLAMVALGSDTGGSVRQPAGFCNVVGLKPTYGRISRYGLVAFGSSFDQIGILSRNCDDAALVLGVIAGKDAADTTSSQHVVPDYLSEMGSVSLKGMKIGVPEEYF 266          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_STRZT (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Streptococcus pneumoniae (strain Taiwan19F-14) GN=gatA PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 1.112e-21
Identity = 65/192 (33.85%), Postives = 95/192 (49.48%), Query Frame = 2
Query:  152 MSFFINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAI 727
            ++ F+   EE  L QA    +     +  +VL G+ +AVKD I      TT  +K L+   P   DA  V   +  G I+VGKTNM E   G SG   HYG  +N +D SK+                  ++LG D GGS+R PAA  G+VG KPT+G +   G++    ++  +G  A TV++  ++  AI
Sbjct:   40 LNSFVTIAEEQALVQA--KAIDEAGIDADNVLSGIPLAVKDNISTDGILTTAASKMLYNYEPIF-DATAVANAKTKGMIVVGKTNMDEFAMGGSGETSHYGATKNAWDHSKVPGGSSSGSAAAVASGQVRLSLGSDTGGSIRQPAAFNGIVGLKPTYGTVSRFGLIAFGSSLDQIGPFAPTVKENALLLNAI 228          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_STRZP (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Streptococcus pneumoniae (strain P1031) GN=gatA PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 1.112e-21
Identity = 65/192 (33.85%), Postives = 95/192 (49.48%), Query Frame = 2
Query:  152 MSFFINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAI 727
            ++ F+   EE  L QA    +     +  +VL G+ +AVKD I      TT  +K L+   P   DA  V   +  G I+VGKTNM E   G SG   HYG  +N +D SK+                  ++LG D GGS+R PAA  G+VG KPT+G +   G++    ++  +G  A TV++  ++  AI
Sbjct:   40 LNSFVTIAEEQALVQA--KAIDEAGIDADNVLSGIPLAVKDNISTDGILTTAASKMLYNYEPIF-DATAVANAKTKGMIVVGKTNMDEFAMGGSGETSHYGATKNAWDHSKVPGGSSSGSAAAVASGQVRLSLGSDTGGSIRQPAAFNGIVGLKPTYGTVSRFGLIAFGSSLDQIGPFAPTVKENALLLNAI 228          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_STRR6 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Streptococcus pneumoniae (strain ATCC BAA-255 / R6) GN=gatA PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 1.112e-21
Identity = 65/192 (33.85%), Postives = 95/192 (49.48%), Query Frame = 2
Query:  152 MSFFINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAI 727
            ++ F+   EE  L QA    +     +  +VL G+ +AVKD I      TT  +K L+   P   DA  V   +  G I+VGKTNM E   G SG   HYG  +N +D SK+                  ++LG D GGS+R PAA  G+VG KPT+G +   G++    ++  +G  A TV++  ++  AI
Sbjct:   40 LNSFVTIAEEQALVQA--KAIDEAGIDADNVLSGIPLAVKDNISTDGILTTAASKMLYNYEPIF-DATAVANAKTKGMIVVGKTNMDEFAMGGSGETSHYGATKNAWDHSKVPGGSSSGSAAAVASGQVRLSLGSDTGGSIRQPAAFNGIVGLKPTYGTVSRFGLIAFGSSLDQIGPFAPTVKENALLLNAI 228          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_STRPS (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Streptococcus pneumoniae (strain CGSP14) GN=gatA PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 1.112e-21
Identity = 65/192 (33.85%), Postives = 95/192 (49.48%), Query Frame = 2
Query:  152 MSFFINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAI 727
            ++ F+   EE  L QA    +     +  +VL G+ +AVKD I      TT  +K L+   P   DA  V   +  G I+VGKTNM E   G SG   HYG  +N +D SK+                  ++LG D GGS+R PAA  G+VG KPT+G +   G++    ++  +G  A TV++  ++  AI
Sbjct:   40 LNSFVTIAEEQALVQA--KAIDEAGIDADNVLSGIPLAVKDNISTDGILTTAASKMLYNYEPIF-DATAVANAKTKGMIVVGKTNMDEFAMGGSGETSHYGATKNAWDHSKVPGGSSSGSAAAVASGQVRLSLGSDTGGSIRQPAAFNGIVGLKPTYGTVSRFGLIAFGSSLDQIGPFAPTVKENALLLNAI 228          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_STRPJ (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Streptococcus pneumoniae (strain ATCC 700669 / Spain 23F-1) GN=gatA PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 1.112e-21
Identity = 65/192 (33.85%), Postives = 95/192 (49.48%), Query Frame = 2
Query:  152 MSFFINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAI 727
            ++ F+   EE  L QA    +     +  +VL G+ +AVKD I      TT  +K L+   P   DA  V   +  G I+VGKTNM E   G SG   HYG  +N +D SK+                  ++LG D GGS+R PAA  G+VG KPT+G +   G++    ++  +G  A TV++  ++  AI
Sbjct:   40 LNSFVTIAEEQALVQA--KAIDEAGIDADNVLSGIPLAVKDNISTDGILTTAASKMLYNYEPIF-DATAVANAKTKGMIVVGKTNMDEFAMGGSGETSHYGATKNAWDHSKVPGGSSSGSAAAVASGQVRLSLGSDTGGSIRQPAAFNGIVGLKPTYGTVSRFGLIAFGSSLDQIGPFAPTVKENALLLNAI 228          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_STRPI (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Streptococcus pneumoniae (strain Hungary19A-6) GN=gatA PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 1.112e-21
Identity = 65/192 (33.85%), Postives = 95/192 (49.48%), Query Frame = 2
Query:  152 MSFFINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAI 727
            ++ F+   EE  L QA    +     +  +VL G+ +AVKD I      TT  +K L+   P   DA  V   +  G I+VGKTNM E   G SG   HYG  +N +D SK+                  ++LG D GGS+R PAA  G+VG KPT+G +   G++    ++  +G  A TV++  ++  AI
Sbjct:   40 LNSFVTIAEEQALVQA--KAIDEAGIDADNVLSGIPLAVKDNISTDGILTTAASKMLYNYEPIF-DATAVANAKTKGMIVVGKTNMDEFAMGGSGETSHYGATKNAWDHSKVPGGSSSGSAAAVASGQVRLSLGSDTGGSIRQPAAFNGIVGLKPTYGTVSRFGLIAFGSSLDQIGPFAPTVKENALLLNAI 228          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_STRP7 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Streptococcus pneumoniae (strain 70585) GN=gatA PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 1.112e-21
Identity = 65/192 (33.85%), Postives = 95/192 (49.48%), Query Frame = 2
Query:  152 MSFFINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAI 727
            ++ F+   EE  L QA    +     +  +VL G+ +AVKD I      TT  +K L+   P   DA  V   +  G I+VGKTNM E   G SG   HYG  +N +D SK+                  ++LG D GGS+R PAA  G+VG KPT+G +   G++    ++  +G  A TV++  ++  AI
Sbjct:   40 LNSFVTIAEEQALVQA--KAIDEAGIDANNVLSGIPLAVKDNISTDGILTTAASKMLYNYEPIF-DATAVANAKTKGMIVVGKTNMDEFAMGGSGETSHYGATKNAWDHSKVPGGSSSGSAAAVASGQVRLSLGSDTGGSIRQPAAFNGIVGLKPTYGTVSRFGLIAFGSSLDQIGPFAPTVKENALLLNAI 228          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_STRP4 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Streptococcus pneumoniae serotype 19F (strain G54) GN=gatA PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 1.112e-21
Identity = 65/192 (33.85%), Postives = 95/192 (49.48%), Query Frame = 2
Query:  152 MSFFINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAI 727
            ++ F+   EE  L QA    +     +  +VL G+ +AVKD I      TT  +K L+   P   DA  V   +  G I+VGKTNM E   G SG   HYG  +N +D SK+                  ++LG D GGS+R PAA  G+VG KPT+G +   G++    ++  +G  A TV++  ++  AI
Sbjct:   40 LNSFVTIAEEQALVQA--KAIDEAGIDADNVLSGIPLAVKDNISTDGILTTAASKMLYNYEPIF-DATAVANAKTKGMIVVGKTNMDEFAMGGSGETSHYGATKNAWDHSKVPGGSSSGSAAAVASGQVRLSLGSDTGGSIRQPAAFNGIVGLKPTYGTVSRFGLIAFGSSLDQIGPFAPTVKENALLLNAI 228          
The following BLAST results are available for this feature:
BLAST of FC878075 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GATA_MARAV8.517e-2229.67Glutamyl-tRNA(Gln) amidotransferase subunit A OS=M... [more]
GATA_CHLPB8.517e-2228.74Glutamyl-tRNA(Gln) amidotransferase subunit A OS=C... [more]
GATA_STRZT1.112e-2133.85Glutamyl-tRNA(Gln) amidotransferase subunit A OS=S... [more]
GATA_STRZP1.112e-2133.85Glutamyl-tRNA(Gln) amidotransferase subunit A OS=S... [more]
GATA_STRR61.112e-2133.85Glutamyl-tRNA(Gln) amidotransferase subunit A OS=S... [more]
GATA_STRPS1.112e-2133.85Glutamyl-tRNA(Gln) amidotransferase subunit A OS=S... [more]
GATA_STRPJ1.112e-2133.85Glutamyl-tRNA(Gln) amidotransferase subunit A OS=S... [more]
GATA_STRPI1.112e-2133.85Glutamyl-tRNA(Gln) amidotransferase subunit A OS=S... [more]
GATA_STRP71.112e-2133.85Glutamyl-tRNA(Gln) amidotransferase subunit A OS=S... [more]
GATA_STRP41.112e-2133.85Glutamyl-tRNA(Gln) amidotransferase subunit A OS=S... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA35BB11RM1 IVIA1 Citrus clementina cDNA clone IC0AAA35BB11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878075 ID=FC878075; Name=FC878075; organism=Citrus clementina; type=EST; length=849bp
TCTGCCTCTGTCTTCAGAAAAGCAGCCGTTTTTCCATCGCTGGACTGTAT
TAGATTATTCAAAAGCCTACAGTTCCGGAGATATTACTCCTCGTATGGTA
GCAGAGCGGTTTATAACCGCAGTACGTGAGTCTTCAAACCCTCCAATGAA
AATGTCATTCTTCATTAACAACAATGAAGAAGATATTCTAAAGCAAGCTA
CAGAGTCGACTCTTCGGTATAAAAAAGGAGAGCCAATATCGGTTCTAGAT
GGAGTCCTAATTGCAGTCAAGGATGAAATTGATTGTTCTCCTTACCCAAC
TACAGGAGGCACCAAGTGGTTGCATAAAGTTAGACCTTGCACAGGTGATG
CATGCTGCGTTATGCGCCTCAGATTGTGCGGCGCCATACTTGTTGGGAAA
ACTAATATGCATGAGCTCGGGGCTGGAACAAGTGGGATAAATCCTCATTA
TGGGGTCGCTAGAAATCCATACGACCCCAGCAAAATCACTGGGGGTTCTT
CTAGTGGATCAGCAGCAGTGGTGGCTGCAGGATTGTGCCCTGTCGCCCTT
GGTGTTGATGGAGGAGGATCCGTGCGGATGCCTGCAGCTCTCTGTGGTGT
TGTTGGTTTTAAGCCAACTTTCGGGCGCATACCTCTTTCTGGTGTTCTTC
CACTGAACTGGACAGTAGGAATGGTTGGAATTTTAGCAGCCACTGTAGAA
GATGCATTGGTTGTTTATGCAGCTATTAATGGTCCACTTCCTTCCCAACA
GCCCACTGTTTCATTGCCAAAAGTATCGTTCCCACTGCTGAAGTCTGCAA
CATCAATATCAGCCATCAAATTGGGCAAGTATGATGCGTGGTTCAACGA
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