FC878075

Overview
NameFC878075
Unique NameFC878075
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length849
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_STRP2 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Streptococcus pneumoniae serotype 2 (strain D39 / NCTC 7466) GN=gatA PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 1.112e-21
Identity = 65/192 (33.85%), Postives = 95/192 (49.48%), Query Frame = 2
Query:  152 MSFFINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAI 727
            ++ F+   EE  L QA    +     +  +VL G+ +AVKD I      TT  +K L+   P   DA  V   +  G I+VGKTNM E   G SG   HYG  +N +D SK+                  ++LG D GGS+R PAA  G+VG KPT+G +   G++    ++  +G  A TV++  ++  AI
Sbjct:   40 LNSFVTIAEEQALVQA--KAIDEAGIDADNVLSGIPLAVKDNISTDGILTTAASKMLYNYEPIF-DATAVANAKTKGMIVVGKTNMDEFAMGGSGETSHYGATKNAWDHSKVPGGSSSGSAAAVASGQVRLSLGSDTGGSIRQPAAFNGIVGLKPTYGTVSRFGLIAFGSSLDQIGPFAPTVKENALLLNAI 228          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_MYCTU (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Mycobacterium tuberculosis GN=gatA PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 1.112e-21
Identity = 69/201 (34.33%), Postives = 98/201 (48.76%), Query Frame = 2
Query:  161 FINNNEEDILKQATESTLRYKKGEPI-SVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQPTV 760
            F++   ++ L  A     +   GEP+ S L GV +A+KD    S  PTT G+K L   R    DA    RLR  G  ++GKTNM E   G+S  N  YG  RNP++  ++                 P+A+G D GGS+R PAAL   VG KPT+G +   G++    ++   G  A TV D  +++  I G  P    +V
Sbjct:   44 FLHVAADEALAAAAAIDKQVAAGEPLPSALAGVPLALKDVFTTSDMPTTCGSKILEGWRS-PYDATLTARLRAAGIPILGKTNMDEFAMGSSTENSAYGPTRNPWNLDRVPGGSGGGSAAALAAFQAPLAIGSDTGGSIRQPAALTATVGVKPTYGTVSRYGLVACASSLDQGGPCARTVLDTALLHQVIAGHDPRDSTSV 243          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_MYCTA (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Mycobacterium tuberculosis (strain ATCC 25177 / H37Ra) GN=gatA PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 1.112e-21
Identity = 69/201 (34.33%), Postives = 98/201 (48.76%), Query Frame = 2
Query:  161 FINNNEEDILKQATESTLRYKKGEPI-SVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQPTV 760
            F++   ++ L  A     +   GEP+ S L GV +A+KD    S  PTT G+K L   R    DA    RLR  G  ++GKTNM E   G+S  N  YG  RNP++  ++                 P+A+G D GGS+R PAAL   VG KPT+G +   G++    ++   G  A TV D  +++  I G  P    +V
Sbjct:   44 FLHVAADEALAAAAAIDKQVAAGEPLPSALAGVPLALKDVFTTSDMPTTCGSKILEGWRS-PYDATLTARLRAAGIPILGKTNMDEFAMGSSTENSAYGPTRNPWNLDRVPGGSGGGSAAALAAFQAPLAIGSDTGGSIRQPAALTATVGVKPTYGTVSRYGLVACASSLDQGGPCARTVLDTALLHQVIAGHDPRDSTSV 243          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_MYCBT (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Mycobacterium bovis (strain BCG / Tokyo 172 / ATCC 35737 / TMC 1019) GN=gatA PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 1.112e-21
Identity = 69/201 (34.33%), Postives = 98/201 (48.76%), Query Frame = 2
Query:  161 FINNNEEDILKQATESTLRYKKGEPI-SVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQPTV 760
            F++   ++ L  A     +   GEP+ S L GV +A+KD    S  PTT G+K L   R    DA    RLR  G  ++GKTNM E   G+S  N  YG  RNP++  ++                 P+A+G D GGS+R PAAL   VG KPT+G +   G++    ++   G  A TV D  +++  I G  P    +V
Sbjct:   44 FLHVAADEALAAAAAVDKQVAAGEPLPSALAGVPLALKDVFTTSDMPTTCGSKILEGWRS-PYDATLTARLRAAGIPILGKTNMDEFAMGSSTENSAYGPTRNPWNLDRVPGGSGGGSAAALAAFQAPLAIGSDTGGSIRQPAALTATVGVKPTYGTVSRYGLVACASSLDQGGPCARTVLDTALLHQVIAGHDPRDSTSV 243          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_MYCBP (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Mycobacterium bovis (strain BCG / Pasteur 1173P2) GN=gatA PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 1.112e-21
Identity = 69/201 (34.33%), Postives = 98/201 (48.76%), Query Frame = 2
Query:  161 FINNNEEDILKQATESTLRYKKGEPI-SVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQPTV 760
            F++   ++ L  A     +   GEP+ S L GV +A+KD    S  PTT G+K L   R    DA    RLR  G  ++GKTNM E   G+S  N  YG  RNP++  ++                 P+A+G D GGS+R PAAL   VG KPT+G +   G++    ++   G  A TV D  +++  I G  P    +V
Sbjct:   44 FLHVAADEALAAAAAVDKQVAAGEPLPSALAGVPLALKDVFTTSDMPTTCGSKILEGWRS-PYDATLTARLRAAGIPILGKTNMDEFAMGSSTENSAYGPTRNPWNLDRVPGGSGGGSAAALAAFQAPLAIGSDTGGSIRQPAALTATVGVKPTYGTVSRYGLVACASSLDQGGPCARTVLDTALLHQVIAGHDPRDSTSV 243          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_MYCBO (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Mycobacterium bovis GN=gatA PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 1.112e-21
Identity = 69/201 (34.33%), Postives = 98/201 (48.76%), Query Frame = 2
Query:  161 FINNNEEDILKQATESTLRYKKGEPI-SVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQPTV 760
            F++   ++ L  A     +   GEP+ S L GV +A+KD    S  PTT G+K L   R    DA    RLR  G  ++GKTNM E   G+S  N  YG  RNP++  ++                 P+A+G D GGS+R PAAL   VG KPT+G +   G++    ++   G  A TV D  +++  I G  P    +V
Sbjct:   44 FLHVAADEALAAAAAVDKQVAAGEPLPSALAGVPLALKDVFTTSDMPTTCGSKILEGWRS-PYDATLTARLRAAGIPILGKTNMDEFAMGSSTENSAYGPTRNPWNLDRVPGGSGGGSAAALAAFQAPLAIGSDTGGSIRQPAALTATVGVKPTYGTVSRYGLVACASSLDQGGPCARTVLDTALLHQVIAGHDPRDSTSV 243          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_MARMS (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Marinomonas sp. (strain MWYL1) GN=gatA PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 1.112e-21
Identity = 66/232 (28.45%), Postives = 112/232 (48.28%), Query Frame = 2
Query:  149 KMSFFINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQPTVSLPKVSFPLLKSATSISAIKLGKYDAWF 844
            +++ FI  +E+  L+QA  + +  + G+  S L G+ +A KD        TT G+K LH   P   ++    R++  GA+++GKTNM E   G+S  N  YG  +NP++   +               L   A G D GGS+R PA+ CG+ G KPT+GR+   G++    ++   G +A + ED   +  A+ G       +   P   + L    + ++ +K+G    +F
Sbjct:   37 QLNSFITVSEQHALEQAAAADVLLQSGKGTS-LTGIPVAHKDLFCTEGTLTTCGSKMLHNFVP-PYESTVTSRIQQAGAVMLGKTNMDEFAMGSSNENSFYGAVKNPWNLDMVPGGSSGGSAAAIAAGLAVAATGTDTGGSIRQPASFCGITGLKPTYGRVSRFGMIAYASSLDQGGPMAKSAEDCAHLMQAMAGFDEKDSTSADKPADDY-LANLNSPLTGLKIGLPKEYF 265          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_LACPL (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Lactobacillus plantarum GN=gatA PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 1.112e-21
Identity = 67/195 (34.36%), Postives = 97/195 (49.74%), Query Frame = 2
Query:  149 KMSFFINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAING 733
            K+  F+N NEE  L+QA  + L     +  +V  G+ +AVKD I      TT  +K L    P   +A  V +L    A++VGKTNM E   G S     + V RNP+D S++                 PVALG D GGS+R P++  G+VG KPT+GR+   G++    ++  +G +  TV+D       I G
Sbjct:   39 KLGAFLNLNEEQALQQA--AALDQDGIDANNVFAGIPMAVKDNIVTKGLTTTAASKMLENFVPVY-NATVVDKLLASNALIVGKTNMDEFAMGGSTETSAFHVTRNPWDISRVPGGSSGGSAVAVASGQVPVALGSDTGGSIRQPSSFNGIVGMKPTYGRVSRWGLIAFGSSLDQIGPMTRTVKDNAAALNMIAG 230          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_CLOPH (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg) GN=gatA PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 1.112e-21
Identity = 70/231 (30.30%), Postives = 115/231 (49.78%), Query Frame = 2
Query:   44 TVLDYSKAYSSGDITPRMVAERFITAVRESSNPPMKMSFFINNNEEDILKQATESTLRYKKGE-PISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAING 733
            T ++ SK     +++     +   +A+++    P   S+ I  NEE+ L+QA++  +  + G+   S L GV IA+KD I      TT  +K L    P   +A  + RL+  GAI++GKTNM E   G++    ++G  +NP++   I                  +ALG D GGS+R P+A CGV G KPT+G +   G++    ++  +G +A +V D       I+G
Sbjct:    7 TAIELSKKIKQKELSVEEAVKATFSAIKKRE--PYYHSY-ITVNEEEALEQASKIQIAIEAGKFADSPLAGVPIAIKDNICVKGMRTTCASKILEDFIP-PYNASVIERLKDAGAIILGKTNMDEFAMGSTTETSYFGATKNPWNIECIPGGSSGGSAAAVAAEEAFIALGTDTGGSIRQPSAFCGVTGIKPTYGTVSRYGLVAYASSLDQIGPIARSVSDCAATLQVISG 233          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_AQUAE (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Aquifex aeolicus GN=gatA PE=1 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 1.112e-21
Identity = 77/253 (30.43%), Postives = 118/253 (46.64%), Query Frame = 2
Query:   77 GDITPRMVAERFITAVRESSNPPMKMSFFINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHK-VRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAING--PLPSQQPTVSLPKVSFPLLKSATSISAIKLG 826
            G+++P+ V E F     ++     K+  +I       LKQA     R         L G+ IAVKD I      TT  +K L   V P   DA  + RL+  GA++VGKTN+ E   G+S     +   +NP+D  ++                 PV+LG D GGS+R PA+ CGV+G KPT+GR+   G++    ++  +G+     ED  +V   I+G     S    V +P+ S  + K    +  +K+G
Sbjct:   17 GEVSPKEVVESFYDRYNQTEE---KVKAYITPLYGKALKQAESLKERELP------LFGIPIAVKDNILVEGEKTTCASKILENFVAPY--DATVIERLKKAGALIVGKTNLDEFAMGSSTEYSAFFPTKNPWDLERVPGGSSGGSAASVAVLSAPVSLGSDTGGSIRQPASFCGVIGIKPTYGRVSRYGLVAFASSLDQIGVFGRRTEDVALVLEVISGWDEKDSTSAKVPVPEWSEEVKK---EVKGLKIG 255          
The following BLAST results are available for this feature:
BLAST of FC878075 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GATA_STRP21.112e-2133.85Glutamyl-tRNA(Gln) amidotransferase subunit A OS=S... [more]
GATA_MYCTU1.112e-2134.33Glutamyl-tRNA(Gln) amidotransferase subunit A OS=M... [more]
GATA_MYCTA1.112e-2134.33Glutamyl-tRNA(Gln) amidotransferase subunit A OS=M... [more]
GATA_MYCBT1.112e-2134.33Glutamyl-tRNA(Gln) amidotransferase subunit A OS=M... [more]
GATA_MYCBP1.112e-2134.33Glutamyl-tRNA(Gln) amidotransferase subunit A OS=M... [more]
GATA_MYCBO1.112e-2134.33Glutamyl-tRNA(Gln) amidotransferase subunit A OS=M... [more]
GATA_MARMS1.112e-2128.45Glutamyl-tRNA(Gln) amidotransferase subunit A OS=M... [more]
GATA_LACPL1.112e-2134.36Glutamyl-tRNA(Gln) amidotransferase subunit A OS=L... [more]
GATA_CLOPH1.112e-2130.30Glutamyl-tRNA(Gln) amidotransferase subunit A OS=C... [more]
GATA_AQUAE1.112e-2130.43Glutamyl-tRNA(Gln) amidotransferase subunit A OS=A... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA35BB11RM1 IVIA1 Citrus clementina cDNA clone IC0AAA35BB11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878075 ID=FC878075; Name=FC878075; organism=Citrus clementina; type=EST; length=849bp
TCTGCCTCTGTCTTCAGAAAAGCAGCCGTTTTTCCATCGCTGGACTGTAT
TAGATTATTCAAAAGCCTACAGTTCCGGAGATATTACTCCTCGTATGGTA
GCAGAGCGGTTTATAACCGCAGTACGTGAGTCTTCAAACCCTCCAATGAA
AATGTCATTCTTCATTAACAACAATGAAGAAGATATTCTAAAGCAAGCTA
CAGAGTCGACTCTTCGGTATAAAAAAGGAGAGCCAATATCGGTTCTAGAT
GGAGTCCTAATTGCAGTCAAGGATGAAATTGATTGTTCTCCTTACCCAAC
TACAGGAGGCACCAAGTGGTTGCATAAAGTTAGACCTTGCACAGGTGATG
CATGCTGCGTTATGCGCCTCAGATTGTGCGGCGCCATACTTGTTGGGAAA
ACTAATATGCATGAGCTCGGGGCTGGAACAAGTGGGATAAATCCTCATTA
TGGGGTCGCTAGAAATCCATACGACCCCAGCAAAATCACTGGGGGTTCTT
CTAGTGGATCAGCAGCAGTGGTGGCTGCAGGATTGTGCCCTGTCGCCCTT
GGTGTTGATGGAGGAGGATCCGTGCGGATGCCTGCAGCTCTCTGTGGTGT
TGTTGGTTTTAAGCCAACTTTCGGGCGCATACCTCTTTCTGGTGTTCTTC
CACTGAACTGGACAGTAGGAATGGTTGGAATTTTAGCAGCCACTGTAGAA
GATGCATTGGTTGTTTATGCAGCTATTAATGGTCCACTTCCTTCCCAACA
GCCCACTGTTTCATTGCCAAAAGTATCGTTCCCACTGCTGAAGTCTGCAA
CATCAATATCAGCCATCAAATTGGGCAAGTATGATGCGTGGTTCAACGA
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