FC878075

Overview
NameFC878075
Unique NameFC878075
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length849
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_BIFLD (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Bifidobacterium longum (strain DJO10A) GN=gatA PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.897e-21
Identity = 71/250 (28.40%), Postives = 123/250 (49.20%), Query Frame = 2
Query:   53 DYSKAYSSGDITPRMVAERFITAVRESSNPPMKMSFFINNNEEDILKQATESTLRYKKGEP-ISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQPTVSLPKVSFPLLKSA 799
            + + A   GD+T R + E  +  + E++ P +K   F+  + +  L+QA     +  + +  +  L GV IA+KD I      TT  +K L    P   DA  + +L+  G  ++GKTN+ E   G+S  +  Y    NP+D  ++                 P+ALG D GGS+R P AL G VG KPT+G +   G + +  ++  +G ++ TV D+ ++   I G    ++ + S+P+   P++ +A
Sbjct:   15 EQAAAVKKGDVTSRELVEAHLKVI-EAAEPSIKA--FLKVSGDVALEQADAFDAKSAEDKAALPELAGVPIAIKDMIVTKGIETTAASKILEGWVP-PYDATVIEKLKAAGMPILGKTNLDEFAQGSSTEHSAYQTTHNPWDTERVPGGSGGGSASAVAAFEAPIALGTDTGGSIRQPGALTGTVGVKPTYGGVSRFGAIAMASSLDQIGPVSRTVLDSALLQEIIGG--HDKRDSTSIPEGPRPMVAAA 258          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_ALHEH (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Alkalilimnicola ehrlichei (strain MLHE-1) GN=gatA PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.897e-21
Identity = 71/233 (30.47%), Postives = 106/233 (45.49%), Query Frame = 2
Query:   35 HRWTVLDYSKAYSSGDITPRMVAERFITAVRESSNPPMKMSFFINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAING 733
            H  TV + + A  +G+ + R V E F+  + ++ NP       I    E  L  A  +  R   GE    L GV +  KD        T+ G++ L        DA  V +L   G +++GK NM E   G+S    +YG  +NP+D   +               L P A G D GGS+R PAALCG+ G KPT+GR+   G++    ++   G +A T ED  ++   + G
Sbjct:    2 HEKTVAEIAAALRAGEFSSREVTEAFLARI-DALNPVTNA--VITPTPEQALAAADAADQRIAAGEA-GPLTGVPLVHKDIFCTQGVRTSCGSRMLDNFT-APYDATVVGKLADAGMVMLGKANMDEFAMGSSNETSYYGPVKNPWDLDAVPGGSSGGSAAAVAGRLAPAATGTDTGGSIRQPAALCGLSGLKPTYGRVSRYGMIAFASSLDQGGPMARTCEDLALLLGGMAG 229          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: HYIN_PANAY (Indoleacetamide hydrolase OS=Pantoea agglomerans pv. gypsophilae GN=iaaH PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 2.478e-21
Identity = 66/189 (34.92%), Postives = 96/189 (50.79%), Query Frame = 2
Query:  182 DILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGV-----DGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAING 733
            D  +Q ++++  +K G     L G+ ++ KD I     P T GT  +      T DA  V +L+  GA++ GK NMHEL  G + +N  +G A NP  P                    P + G+     D GGSVR+PAA CG+ GF+PT GR   SG++P++ T    G+L  TV+DA  +Y  I+G
Sbjct:   46 DAEEQFSKASDAFKGG----ALWGIPVSFKDNICVKDLPVTAGTPGMTGCI-ATHDAFIVKKLKSLGAVVAGKNNMHELSFGITSVNVQWGTAGNPAAPGYCAGGSSGGCVSR------PWSAGLYRSPSDTGGSVRIPAAFCGIAGFRPTTGRWASSGIIPVSHTKDAPGLLTRTVKDAAFLYGLISG 223          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_LAWIP (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Lawsonia intracellularis (strain PHE/MN1-00) GN=gatA PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 2.478e-21
Identity = 63/189 (33.33%), Postives = 94/189 (49.74%), Query Frame = 2
Query:  161 FINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAI 727
            FI    E+ L +A +  L     +P   L G+ IAVKD I     PTT  +  L    P   DA  + +L+  GAI++GKTN+ E   G+S     +G   NP++   +                C  A+G D GGS+R PAALCG +G KPT+GR+   G++    ++   G +  TVEDA ++ + +
Sbjct:   44 FITICAEEALSEAKK--LDQSTPDPKKPLWGIPIAVKDNILTKNIPTTAASCMLKHFIP-QYDAFIIQQLKNAGAIIIGKTNLDEFAMGSSTETSFFGPTYNPWNTKCVPGGSSGGSAASVAAFQCFSAIGTDTGGSIRQPAALCGCIGLKPTYGRVSRYGIIAYASSLDQAGPITRTVEDAAIMLSVL 229          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_ACIBT (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Acinetobacter baumannii (strain ATCC 17978 / NCDC KC 755) GN=gatA PE=3 SV=2)

HSP 1 Score: 102.834 bits (255), Expect = 2.478e-21
Identity = 68/272 (25.00%), Postives = 121/272 (44.49%), Query Frame = 2
Query:   35 HRWTVLDYSKAYSSGDITPRMVAERFITAVRESSNPPMKMSFFINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHK-VRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQPTVSLPKVSFPLLKSATSISAIKLGKYDAWFN 847
            HR ++ + ++  S    + R + E ++  + +  +P +K   ++    E  L++A  +    K G   + L G+ +A KD        TT G+K L   + P   DA  V + +  G + +GK NM E   G++  + + G   NP+    +               L P A G D GGS+R PA+ CG+ G KPT+GR+   G++    ++   G +A + ED   +   I G       +V      +    + TS+  +++G    +FN
Sbjct:    5 HRLSIRELAEGLSQAKFSSRELTEHYLKRIAKI-DPQVKS--YVTVTSEQALREADAADAALKAGNA-TALTGIPLAHKDIFCTKGIKTTAGSKMLDNFISPY--DATVVEKTKAAGLVTLGKVNMDEFAMGSTSESSYVGATSNPWALDHVPGGSSGGSAAAVAADLAPFATGTDTGGSIRQPASFCGLTGLKPTYGRVSRFGIIAYASSLDQAGPMARSAEDCAYLMNVIAGHDAKDSTSVKKEVDDYVANLNGTSVKGLRIGIPKQYFN 270          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_SYNS9 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Synechococcus sp. (strain CC9902) GN=gatA PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 3.236e-21
Identity = 79/264 (29.92%), Postives = 120/264 (45.45%), Query Frame = 2
Query:   44 TVLDYSKAYSSGDITPRMVAERFITAVRESSNPPMKMSFFINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWL-HKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQP--TVSLPKVSFPLLKSATSISAIKLG 826
            T+  + +   +GDI+ R + ++ I  + E++ P   +S +     E     A         GE +  L G+ +A+KD +      TT  ++ L H V P    A    RL   G +LVGKTN+ E   G S     +G   NP++   +                C  +LG D GGS+R PA+ CGVVG KPT+GR+   G++    ++  VG  A +V DA  +   I GP P       V +P  S  L +   SI  +K+G
Sbjct:    7 TISAWRQQLQNGDISSRELVDQHIERL-ETAEP--SLSVYNEITVERARADADRIDAARAAGESLGPLAGLPLAIKDNLCTRGVRTTCSSRMLEHFVPPYESTA--TERLWQAGGVLVGKTNLDEFAMGGSTETSAFGATHNPWNLDHVPGGSSGGSAAAVASGSCIASLGSDTGGSIRQPASFCGVVGLKPTYGRVSRWGLVAFASSLDQVGPFATSVADAAELLQVIAGPDPRDSTCLNVEVPDYSAGLNQ---SIKGLKVG 262          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_SYNS3 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Synechococcus sp. (strain CC9311) GN=gatA PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 3.236e-21
Identity = 73/263 (27.76%), Postives = 123/263 (46.77%), Query Frame = 2
Query:   47 VLDYSKAYSSGDITPRMVAERF---ITAVRESSNPPMKMSFFINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQPTVSLPKVSFPLLKSATSISAIKLG 826
            + ++ +   SG+++ R + +     I AV  S +  ++++      + D L +A  +      GE +  L GV IA+KD +      TT  ++ L    P   ++    RL   GA+L+GKTN+ E   G S     +G   NP++   +                C  +LG D GGS+R PA+ CGVVG KPT+GR+   G++    ++  VG  A +V DA  +  AI G  P     +  P  ++  +    S+S +++G
Sbjct:    3 IAEWRQQLESGEVSARELTDHHLARIKAVDSSVHAFLEVTADRARADADRLDEARAA------GEDLPPLAGVPIAIKDNLCTKGIRTTSSSRMLESFVP-PYESTVTDRLWRSGAVLIGKTNLDEFAMGGSTETSAFGPTANPWNTGYVPGGSSGGSAAAVAAGECMASLGSDTGGSIRQPASFCGVVGLKPTYGRVSRYGLVAFASSLDQVGPFATSVSDAAELLQAIAGEDPRDSTCLKAPVPNYREV-LGRSVSGLRIG 257          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_STAAB (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) GN=gatA PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 3.236e-21
Identity = 70/233 (30.04%), Postives = 113/233 (48.50%), Query Frame = 2
Query:   83 ITPRMVAERFITAVRESSNPPMKMSFFINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQPTVSLPKVSF 781
            I P  V +    A+ E+ +P +K   F+  ++E+ +K+A E      K +    L G+ + +KD I  +   TT  +K L +  P   ++  + +L    A+L+GK NM E   G S    ++    NP+D   +               L P +LG D GGS+R PAA CGVVG KPT+GR+   G++    ++  +G L   V+D  +V  AI+G   +   + S+  V F
Sbjct:   20 IKPSDVVKDVYDAIEET-DPTIKS--FLALDKENAIKKAQELDELQAKDQMDGKLFGIPMGIKDNIITNGLETTCASKMLEEFVPIY-ESTVMEKLHNENAVLIGKLNMDEFAMGGSTETSYFKKTVNPFDHKAVPGGSSGGSAAAVAAGLVPFSLGSDTGGSIRQPAAYCGVVGMKPTYGRVSRFGLVAFASSLDQIGPLTRNVKDNAIVLEAISGADVNDSTSASVDDVDF 248          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_PROM0 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Prochlorococcus marinus (strain MIT 9301) GN=gatA PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 3.236e-21
Identity = 68/227 (29.96%), Postives = 109/227 (48.02%), Query Frame = 2
Query:  149 KMSFFINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHK-VRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQPTVSLPKVSFPLLKSATSISAIKLG 826
            +++ +I   +++ + QA       +  E +  L G+ IA+KD I      TT  +K L   V P    A    +L   G I +GKTN+ E   G+S     +GV  NP+D +++                C  A+G D GGS+R PA+ CGVVG KPT+GR+   G++    ++  +G +  TV DA  +  +I+G  P     +  P  ++ L     SI  +K+G
Sbjct:   34 EINSYICTTKDNAIAQAENIDKLIQFKEKLPPLAGMPIAIKDNICTKGVATTCASKMLKNFVAPYESTASS--KLWSSGGICLGKTNLDEFAMGSSTETSLFGVTSNPWDINRVPGGSSGGSAASVAAGFCAAAIGSDTGGSIRQPASFCGVVGLKPTYGRVSRWGLVAFASSLDQIGPITNTVSDAAEILYSISGKDPFDSTCLDKPVPNY-LTHLNKSIKGLKIG 257          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_NEOSM (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Neorickettsia sennetsu (strain Miyayama) GN=gatA PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 3.236e-21
Identity = 61/190 (32.11%), Postives = 95/190 (50.00%), Query Frame = 2
Query:  176 EEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSK----ITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAING 733
            EE+  ++A  +  R K+GE ++ L G+   +KD        TT  ++ L    P T ++    +L   GA+++GK NM E   G+S  +  +G  +NP    K    +                 P +LG D GGSVR PA+ CG+VG +PT+GR    G++PL  ++   GIL+  VED   V+  I+G
Sbjct:   49 EEEARQRAKLADERLKRGESVNTLTGIPCVIKDMYCTKGVRTTAASRALRNFVP-TYESTVTSKLIDAGAVMLGKANMDEFAMGSSNTSSFFGPVKNPLKGKKGVDLVPGGSSGGSAAAVADYYSPFSLGSDTGGSVRQPASFCGLVGLRPTYGRCSRWGMIPLANSLDQAGILSRNVEDNAAVFEVISG 237          
The following BLAST results are available for this feature:
BLAST of FC878075 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GATA_BIFLD1.897e-2128.40Glutamyl-tRNA(Gln) amidotransferase subunit A OS=B... [more]
GATA_ALHEH1.897e-2130.47Glutamyl-tRNA(Gln) amidotransferase subunit A OS=A... [more]
HYIN_PANAY2.478e-2134.92Indoleacetamide hydrolase OS=Pantoea agglomerans p... [more]
GATA_LAWIP2.478e-2133.33Glutamyl-tRNA(Gln) amidotransferase subunit A OS=L... [more]
GATA_ACIBT2.478e-2125.00Glutamyl-tRNA(Gln) amidotransferase subunit A OS=A... [more]
GATA_SYNS93.236e-2129.92Glutamyl-tRNA(Gln) amidotransferase subunit A OS=S... [more]
GATA_SYNS33.236e-2127.76Glutamyl-tRNA(Gln) amidotransferase subunit A OS=S... [more]
GATA_STAAB3.236e-2130.04Glutamyl-tRNA(Gln) amidotransferase subunit A OS=S... [more]
GATA_PROM03.236e-2129.96Glutamyl-tRNA(Gln) amidotransferase subunit A OS=P... [more]
GATA_NEOSM3.236e-2132.11Glutamyl-tRNA(Gln) amidotransferase subunit A OS=N... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA35BB11RM1 IVIA1 Citrus clementina cDNA clone IC0AAA35BB11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878075 ID=FC878075; Name=FC878075; organism=Citrus clementina; type=EST; length=849bp
TCTGCCTCTGTCTTCAGAAAAGCAGCCGTTTTTCCATCGCTGGACTGTAT
TAGATTATTCAAAAGCCTACAGTTCCGGAGATATTACTCCTCGTATGGTA
GCAGAGCGGTTTATAACCGCAGTACGTGAGTCTTCAAACCCTCCAATGAA
AATGTCATTCTTCATTAACAACAATGAAGAAGATATTCTAAAGCAAGCTA
CAGAGTCGACTCTTCGGTATAAAAAAGGAGAGCCAATATCGGTTCTAGAT
GGAGTCCTAATTGCAGTCAAGGATGAAATTGATTGTTCTCCTTACCCAAC
TACAGGAGGCACCAAGTGGTTGCATAAAGTTAGACCTTGCACAGGTGATG
CATGCTGCGTTATGCGCCTCAGATTGTGCGGCGCCATACTTGTTGGGAAA
ACTAATATGCATGAGCTCGGGGCTGGAACAAGTGGGATAAATCCTCATTA
TGGGGTCGCTAGAAATCCATACGACCCCAGCAAAATCACTGGGGGTTCTT
CTAGTGGATCAGCAGCAGTGGTGGCTGCAGGATTGTGCCCTGTCGCCCTT
GGTGTTGATGGAGGAGGATCCGTGCGGATGCCTGCAGCTCTCTGTGGTGT
TGTTGGTTTTAAGCCAACTTTCGGGCGCATACCTCTTTCTGGTGTTCTTC
CACTGAACTGGACAGTAGGAATGGTTGGAATTTTAGCAGCCACTGTAGAA
GATGCATTGGTTGTTTATGCAGCTATTAATGGTCCACTTCCTTCCCAACA
GCCCACTGTTTCATTGCCAAAAGTATCGTTCCCACTGCTGAAGTCTGCAA
CATCAATATCAGCCATCAAATTGGGCAAGTATGATGCGTGGTTCAACGA
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