FC878075

Overview
NameFC878075
Unique NameFC878075
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length849
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_GEOUR (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Geobacter uraniireducens (strain Rf4) GN=gatA PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 3.236e-21
Identity = 71/232 (30.60%), Postives = 107/232 (46.12%), Query Frame = 2
Query:  149 KMSFFINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQPTVSLPKVSFPLLKSATSISAIKLGKYDAWF 844
            +++ FI    E+ LK A  +  R   G+ + +L G+ IA+KD        TT  ++ L    P   DA  V RL+  G +LVGK N  E   G+S  + +YG   NP++   I                    LG D GGS+R PA+ CG VG KPT+GR+   GV+    ++  VG +   V D  ++  A+ G  P    +V LP   +    S   +  +K+G    +F
Sbjct:   39 RVNAFITVTPEEALKNAEAADRRIAAGD-MQLLTGIPIALKDIFLTKGVRTTCASRILDNFIP-PYDATSVARLKAQGMVLVGKLNQDEFAMGSSTESSYYGKTHNPWNLECIPGGSSGGSAAAIAARQAIATLGTDTGGSIRQPASHCGCVGLKPTYGRVSRYGVIAYASSLDQVGPVTRDVTDCAIMLGAVAGFDPKDSTSVDLPVPDYSKALS-NDVKGLKIGLPKEYF 267          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_AZOSE (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Azoarcus sp. (strain EbN1) GN=gatA PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 3.236e-21
Identity = 69/207 (33.33%), Postives = 100/207 (48.31%), Query Frame = 2
Query:  152 MSFFINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHK-VRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQPTVSLP 769
            ++ FI  + +  L+ A  +  R   G+    L G+ +A KD        TT G+K L   V P   DA  V  L+  GA+ +GKTNM E   G+S  N H+G A+NP+D ++I               L P+A G D GGSVR PAAL GV G KPT+G +   G++    ++   G   A+  D   +  A+ G  P    ++  P
Sbjct:   38 LNAFITVDRDGALEAARAADARIAAGDA-GPLTGIPLAHKDVFCTEGVLTTCGSKMLANFVSPY--DAHVVSLLKTAGAVSLGKTNMDEFAMGSSNENSHFGPAKNPWDTTRIPGGSSGGSAAAVAARLVPIATGTDTGGSVRQPAALTGVTGIKPTYGVVSRYGMIAYASSLDQGGAFGASAADCAQLLTAMAGFDPRDSTSLERP 241          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_AZOSB (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Azoarcus sp. (strain BH72) GN=gatA PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 3.236e-21
Identity = 78/255 (30.59%), Postives = 117/255 (45.88%), Query Frame = 2
Query:   44 TVLDYSKAYSSGDITPRMVAERFITAVRESSNPPMKMSFFINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHK-VRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQPTVSLPKVSFPLLKSATS 805
            +V +  +A  +  ++   +A  F+  + E  NP +    FI  + E  L  A  +  R   G     L G+ +A KD        TT G+K L   V P   DA  V RL+  GA+ +GKTNM E   G+S  + HYG  RNP+D ++I               L P+A G D GGSVR PA+  GV G KPT+G +   G++    ++   G   A+ ED  ++  A+ G  P     +  P   +    + T+
Sbjct:    5 SVSELRRALDTRQVSSVELATLFLDRIAER-NPALNA--FITIDREGALAAARAADARIAAGTA-GPLTGIPLAHKDLFCTEGVLTTCGSKMLADFVSPY--DAHVVSRLKDAGAVSLGKTNMDEFAMGSSNESSHYGAVRNPWDTTRIPGGSSGGSAAAVAARLVPLATGSDTGGSVRQPASHTGVTGIKPTYGVVSRYGMIAYASSLDQGGAFGASAEDCALLLTAMAGFDPRDSTCLDRPAEDYAAALAPTA 253          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_STRZJ (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Streptococcus pneumoniae (strain JJA) GN=gatA PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 4.227e-21
Identity = 64/192 (33.33%), Postives = 95/192 (49.48%), Query Frame = 2
Query:  152 MSFFINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAI 727
            ++ F+   EE  L QA    +     +  +VL G+ +AVKD I      TT  +K L+   P   DA  V   +  G I+VGKTNM E   G SG   HYG  +N ++ SK+                  ++LG D GGS+R PAA  G+VG KPT+G +   G++    ++  +G  A TV++  ++  AI
Sbjct:   40 LNSFVTIAEEQALVQA--KAIDEAGIDADNVLSGIPLAVKDNISTDGILTTAASKMLYNYEPIF-DATAVANAKTKGMIVVGKTNMDEFAMGGSGETSHYGATKNAWNHSKVPGGSSSGSAAAVASGQVRLSLGSDTGGSIRQPAAFNGIVGLKPTYGTVSRFGLIAFGSSLDQIGPFAPTVKENALLLNAI 228          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_STRPN (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Streptococcus pneumoniae GN=gatA PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 4.227e-21
Identity = 64/192 (33.33%), Postives = 95/192 (49.48%), Query Frame = 2
Query:  152 MSFFINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAI 727
            ++ F+   EE  L QA    +     +  +VL G+ +AVKD I      TT  +K L+   P   DA  V   +  G I+VGKTNM E   G SG   HYG  +N ++ SK+                  ++LG D GGS+R PAA  G+VG KPT+G +   G++    ++  +G  A TV++  ++  AI
Sbjct:   40 LNSFVTIAEEQALVQA--KAIDEAGIDADNVLSGIPLAVKDNISTDGILTTAASKMLYNYEPIF-DATAVANAKTKGMIVVGKTNMDEFAMGGSGETSHYGATKNAWNHSKVPGGSSSGSAAAVASGQVRLSLGSDTGGSIRQPAAFNGIVGLKPTYGTVSRFGLIAFGSSLDQIGPFAPTVKENALLLNAI 228          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_PSEAE (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Pseudomonas aeruginosa GN=gatA PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 4.227e-21
Identity = 75/265 (28.30%), Postives = 123/265 (46.42%), Query Frame = 2
Query:   35 HRWTVLDYSKAYSSGDITPRMVAERFITAVRESSNPPMKMSFFINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHK-VRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQPTVSLPKVSFPLLKSATSISAIKLG 826
            H+ T+ + ++A +    +   +    +  +R+      +++ FI+  ++  + QA  +  R   GE  ++L G  IA KD        T+ G+K L   V P   DA  V +L   GA+ +GK NM E   G+S  + HYG  +NP+   ++               L P A G D GGS+R PAAL  + G KPT+GR+   G++    ++   G LA T ED  ++   + G  P    +V  P V   L      +S +++G
Sbjct:    3 HQLTLAEIARALADKQFSAEELTRTLLGRIRQLDP---QLNSFISITDDLAIAQAKAADERRANGENGALL-GAPIAHKDLFCTQGVRTSCGSKMLDNFVSPY--DATVVEKLTAAGAVTLGKLNMDEFAMGSSNQSSHYGAVKNPWSLDRVPGGSSGGSAAAVAARLLPAATGTDTGGSIRQPAALTNLTGIKPTYGRVSRWGMIAYASSLDQGGPLARTAEDCALMLGVMAGFDPKDSTSVEQP-VDDYLAALQKPLSGLRIG 260          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_PROAC (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Propionibacterium acnes GN=gatA PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 4.227e-21
Identity = 66/213 (30.99%), Postives = 99/213 (46.48%), Query Frame = 2
Query:  188 LKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQPTVSLPKVSFPLLKSATSISAIKLG 826
            L  A     R   GE +  L GV +AVKD        TT  ++ L    P   D+  V R +  G +++GKTN+ E   G+S     +G   NP+D  ++                 P+ALG D GGS+R P A+ G VG KPT+G     GV+ +  ++   G  A TV DA +++ AI G     Q T++ P  +       T +S +++G
Sbjct:   53 LDAARRIDARIADGEHLGPLAGVPLAVKDLFCTKGIATTASSQMLEGWIP-PYDSTIVTRCKDAGMVILGKTNLDEFAMGSSTETSAFGPTHNPWDLERVPGGSGGGSAASLASFQAPLALGTDTGGSIRQPGAVTGTVGIKPTYGSTSRYGVIAMASSLDTPGPCARTVLDAALLHQAIAGHDAMDQTTINQPTPAVVEAARQTDVSGVRIG 264          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_PELPB (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Pelodictyon phaeoclathratiforme (strain DSM 5477 / BU-1) GN=gatA PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 4.227e-21
Identity = 66/230 (28.70%), Postives = 103/230 (44.78%), Query Frame = 2
Query:  155 SFFINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQPTVSLPKVSFPLLKSATSISAIKLGKYDAWF 844
            + +I    +  L++A     + ++G     L G+ +A+KD I       T  +K L        DA  V+RL    AI +GKTNM E   G+S  N  +G   NP+D +++               L  VALG D GGSVR PA  C +VG KPT+GRI   G++    +   +G+L    +D  +V   + G       +   P   +    +  S+  +K+G    +F
Sbjct:   38 NIYITVFHDQALERARTLDRKLREGGNPGKLFGMPMAIKDNIAMKNCRLTCASKILENYESVY-DATAVLRLEEADAIFLGKTNMDEFAMGSSNENSAFGNVPNPFDKTRVPGGSSGGSAAAVANGLALVALGSDTGGSVRQPAGFCDIVGLKPTYGRISRYGLVAFASSFDQIGVLGLNCDDVALVLGVMAGKDEGDATSSRHPVADYASEMATLSVDGLKIGVPKEYF 266          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_LACAC (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Lactobacillus acidophilus GN=gatA PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 4.227e-21
Identity = 72/240 (30.00%), Postives = 117/240 (48.75%), Query Frame = 2
Query:   59 SKAYSSGDITPRMVAERFITAVRESSNPPMKMSFFINNNEEDILKQATES-TLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQPTVSLPKV 775
            +K  +SG+++   +A+  +  ++E+     K++ +I      +L  A  +  L Y K    S L G+ IA+KD I  +   TT  +  L+   P   DA  + +L+  GA  VGKTNM E   G+S  + +YG   NP++  K+                   ALG D GGS+R PAA  G+ G KPT+GR+   G++    ++  +G++   V+D+  V   I G       TVS+ +V
Sbjct:   12 NKKLASGELSADKLAKDTVANIKETDK---KLNAWIT-----VLDDAKPAENLDYSK----SKLAGIPIAIKDNIITNGVKTTAASHMLYNYMPMY-DATVISKLKKAGATFVGKTNMDEFAMGSSTEHSYYGATHNPWNLDKVPGGSSGGSAAAVAGGQVVAALGSDTGGSIRQPAAFNGIFGIKPTYGRVSRWGLIAFGSSLDQIGVMTKRVKDSAEVLNVIAGG-DEHDSTVSVREV 237          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_CHLPD (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Chlorobium phaeobacteroides (strain DSM 266) GN=gatA PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 4.227e-21
Identity = 75/266 (28.20%), Postives = 120/266 (45.11%), Query Frame = 2
Query:   53 DYSKAYSSGDITPRMVAERFITAVRESSNPPMKMSFFINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQPTVSLPKVS-FPLLKSATSISAIKLGKYDAWFN 847
            D   +  +G  T   V + ++  +    +  + ++ F     E  L +A     R+ +G    +L G+ +A+KD I       T  ++ L        DA  + RL    A+ +GKTNM E   G+S  N  +G   NP+D +++               L  VALG D GGSVR PA  C +VG KPT+GRI   G++    +   +G+LA   +DA +V   + G    +  T S   VS +    +A S   +K+G    +F+
Sbjct:    8 DLRSSLLAGQTTCEEVTKSYLERIDRHCDDNIFLAVF----HEQALSRARSLDRRFSEGGTPGLLFGMPMAIKDNISIKGARLTCASRILENYESVY-DATVIERLLNEDAVFIGKTNMDEFAMGSSNENSAFGPVANPFDKTRVPGGSSGGSAAAVAAGLALVALGSDTGGSVRQPAGFCDIVGLKPTYGRISRYGLVAFASSFDQIGVLARNSDDAALVLGVMAG-ADERDATSSRHAVSNYAEEMAAVSPDGLKIGVPKEFFH 267          
The following BLAST results are available for this feature:
BLAST of FC878075 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GATA_GEOUR3.236e-2130.60Glutamyl-tRNA(Gln) amidotransferase subunit A OS=G... [more]
GATA_AZOSE3.236e-2133.33Glutamyl-tRNA(Gln) amidotransferase subunit A OS=A... [more]
GATA_AZOSB3.236e-2130.59Glutamyl-tRNA(Gln) amidotransferase subunit A OS=A... [more]
GATA_STRZJ4.227e-2133.33Glutamyl-tRNA(Gln) amidotransferase subunit A OS=S... [more]
GATA_STRPN4.227e-2133.33Glutamyl-tRNA(Gln) amidotransferase subunit A OS=S... [more]
GATA_PSEAE4.227e-2128.30Glutamyl-tRNA(Gln) amidotransferase subunit A OS=P... [more]
GATA_PROAC4.227e-2130.99Glutamyl-tRNA(Gln) amidotransferase subunit A OS=P... [more]
GATA_PELPB4.227e-2128.70Glutamyl-tRNA(Gln) amidotransferase subunit A OS=P... [more]
GATA_LACAC4.227e-2130.00Glutamyl-tRNA(Gln) amidotransferase subunit A OS=L... [more]
GATA_CHLPD4.227e-2128.20Glutamyl-tRNA(Gln) amidotransferase subunit A OS=C... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA35BB11RM1 IVIA1 Citrus clementina cDNA clone IC0AAA35BB11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878075 ID=FC878075; Name=FC878075; organism=Citrus clementina; type=EST; length=849bp
TCTGCCTCTGTCTTCAGAAAAGCAGCCGTTTTTCCATCGCTGGACTGTAT
TAGATTATTCAAAAGCCTACAGTTCCGGAGATATTACTCCTCGTATGGTA
GCAGAGCGGTTTATAACCGCAGTACGTGAGTCTTCAAACCCTCCAATGAA
AATGTCATTCTTCATTAACAACAATGAAGAAGATATTCTAAAGCAAGCTA
CAGAGTCGACTCTTCGGTATAAAAAAGGAGAGCCAATATCGGTTCTAGAT
GGAGTCCTAATTGCAGTCAAGGATGAAATTGATTGTTCTCCTTACCCAAC
TACAGGAGGCACCAAGTGGTTGCATAAAGTTAGACCTTGCACAGGTGATG
CATGCTGCGTTATGCGCCTCAGATTGTGCGGCGCCATACTTGTTGGGAAA
ACTAATATGCATGAGCTCGGGGCTGGAACAAGTGGGATAAATCCTCATTA
TGGGGTCGCTAGAAATCCATACGACCCCAGCAAAATCACTGGGGGTTCTT
CTAGTGGATCAGCAGCAGTGGTGGCTGCAGGATTGTGCCCTGTCGCCCTT
GGTGTTGATGGAGGAGGATCCGTGCGGATGCCTGCAGCTCTCTGTGGTGT
TGTTGGTTTTAAGCCAACTTTCGGGCGCATACCTCTTTCTGGTGTTCTTC
CACTGAACTGGACAGTAGGAATGGTTGGAATTTTAGCAGCCACTGTAGAA
GATGCATTGGTTGTTTATGCAGCTATTAATGGTCCACTTCCTTCCCAACA
GCCCACTGTTTCATTGCCAAAAGTATCGTTCCCACTGCTGAAGTCTGCAA
CATCAATATCAGCCATCAAATTGGGCAAGTATGATGCGTGGTTCAACGA
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