FC878075

Overview
NameFC878075
Unique NameFC878075
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length849
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_VESOH (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Vesicomyosocius okutanii subsp. Calyptogena okutanii (strain HA) GN=gatA PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 5.520e-21
Identity = 69/234 (29.49%), Postives = 110/234 (47.01%), Query Frame = 2
Query:   35 HRWTVLDYSKAYSSGDITPRMVAERFITAVRESSNPPMKMSFFINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHK-VRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAING 733
            H  T+++  K   + D +   + + +++ + +S     K++ FI   +E  L QA  +  +   G   S+L G+  A KD        T+ G+K L   + P   DA    +L     +++GKTNM E   G+S  N  Y   +NP++  KI               L   A G D GGS+R PA+LCG+ G KPT+GRI   G++    +    GI+  T +DA +V   + G
Sbjct:    2 HTKTIVELYKGLKNKDFSCVELTQYYLSRINQS-----KLNAFITVTDELALVQAQVADDKIALGNA-SILTGIPYAHKDIFCTKGVKTSAGSKMLDTFIAPY--DATVSQKLNQMNLVMLGKTNMDEFAMGSSNENSFYNAVKNPWNYLKIPGGSSGGSAASVAGGLSCFATGTDTGGSIRQPASLCGITGLKPTYGRISRYGIIAYASSFDQAGIMTKTSQDAAIVLNIMAG 227          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_TROWT (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Tropheryma whipplei (strain Twist) GN=gatA PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 5.520e-21
Identity = 80/267 (29.96%), Postives = 121/267 (45.32%), Query Frame = 2
Query:   35 HRWTVLDYSKAYSSGDITPRMVAERFITAVRESSNPPMKMSFFINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQPTVSLPKVSFPLLK---SATSISAIKLG 826
            HR   L  SK  S+ +     VAE FI  +  S +      +   +   D+ ++  E     K    +S L GV IAVKD I     PTT G+K L    P   +A  + R+      ++GKTN  E G G+S     Y   RNP+D S+                  P+ALG D GGS+R+PA   G VG +PT+G +   GV+ L  +   VG  ++ + DA +++  I G  P+   ++    ++F       +   IS ++LG
Sbjct:   39 HRLAALIRSKEVSALE-----VAESFIDNIEASDSRICAFLYTDFSYTRDVARRVDEEL---KSATKLSPLAGVPIAVKDMILTRDMPTTAGSKILEGWIP-PYNATVIERISRARMPILGKTNQDEFGMGSSTEYSAYKTTRNPWDLSRTAGGSGGGSSAAVSASQAPLALGTDTGGSIRLPAHCTGTVGIRPTYGSVSRYGVIALASSFDQVGPCSSNILDAALLHEVIAGYDPADAVSIKDQDLNFSQAAYEGANRGISGVRLG 296          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_TROW8 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Tropheryma whipplei (strain TW08/27) GN=gatA PE=3 SV=2)

HSP 1 Score: 101.679 bits (252), Expect = 5.520e-21
Identity = 80/267 (29.96%), Postives = 121/267 (45.32%), Query Frame = 2
Query:   35 HRWTVLDYSKAYSSGDITPRMVAERFITAVRESSNPPMKMSFFINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQPTVSLPKVSFPLLK---SATSISAIKLG 826
            HR   L  SK  S+ +     VAE FI  +  S +      +   +   D+ ++  E     K    +S L GV IAVKD I     PTT G+K L    P   +A  + R+      ++GKTN  E G G+S     Y   RNP+D S+                  P+ALG D GGS+R+PA   G VG +PT+G +   GV+ L  +   VG  ++ + DA +++  I G  P+   ++    ++F       +   IS ++LG
Sbjct:   39 HRLAALIRSKEVSALE-----VAESFIDNIEASDSRICAFLYTDFSYTRDVARRVDEEL---KSATKLSPLAGVPIAVKDMILTRDMPTTAGSKILEGWIP-PYNATVIERISRARMPILGKTNQDEFGMGSSTEYSAYKTTRNPWDLSRTAGGSGGGSSAAVSASQAPLALGTDTGGSIRLPAHCTGTVGIRPTYGSVSRYGVIALASSFDQVGPCSSNILDAALLHEVIAGYDPADAVSIKDQDLNFSQAAYEGANRGISGVRLG 296          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_THETN (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Thermoanaerobacter tengcongensis GN=gatA PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 5.520e-21
Identity = 69/246 (28.05%), Postives = 114/246 (46.34%), Query Frame = 2
Query:   44 TVLDYSKAYSSGDITPRMVAERFITAVRESSNPPMKMSFFINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQPTVSLPKVSF 781
            TV +  +     +++ + V + ++  ++E      K+   +   EE  L++A  +    K GE    L G+ + +KD I      TT  +K L    P   +A  V RL   G +++GK+N+ E   G+S  N  +   +NP+D S++                   ALG D GGS+R PA+LCGVVG KPT+G +   G++    ++  +G     V D  +V  AI G  P    +V + K  +
Sbjct:    7 TVHELKELLHKREVSAQEVTKSYLERIKEVEP---KIDALVTITEEFALERAKVADEMIKNGEAKD-LTGIPVIIKDNISTEGIRTTCSSKMLENYIP-PYNATVVERLLNEGVVILGKSNLDEFAMGSSTENSAFKTTKNPWDLSRVPGGSSGGSAAAVAADEAAFALGSDTGGSIRQPASLCGVVGMKPTYGLVSRYGLVAFASSLDQIGPFTKDVTDCAIVLNAIAGHDPMDSTSVKIEKPDY 247          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_THEP3 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) GN=gatA PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 5.520e-21
Identity = 67/246 (27.24%), Postives = 115/246 (46.75%), Query Frame = 2
Query:   44 TVLDYSKAYSSGDITPRMVAERFITAVRESSNPPMKMSFFINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQPTVSLPKVSF 781
            T+ +  +     +++   V + ++  ++E      K+   I   E+  L++A E+  + K GE  + L G+ + +KD I      TT  +K L    P   +A  V +L   G I++GK+N+ E   G+S  N  +   +NP+D S++                   ALG D GGS+R PA+LCGVVG KPT+G +   G++    ++  +G     V D  +V   I G  P    ++ + K  +
Sbjct:    7 TIHELRELLKKREVSALEVTKSYLERIKEVEP---KIDALITITEDFALQRAKEADEKIKNGED-TALTGIPVIIKDNISTEGIKTTCSSKMLENYIP-PYNATVVEKLLEEGVIILGKSNLDEFAMGSSTENSAFKTTKNPWDLSRVPGGSSGGSAAAIAADEAAFALGSDTGGSIRQPASLCGVVGMKPTYGLVSRYGLVAFASSLDQIGPFTKDVTDCAIVLNTIIGHDPKDSTSLKIDKPDY 247          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_STAHJ (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Staphylococcus haemolyticus (strain JCSC1435) GN=gatA PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 5.520e-21
Identity = 69/241 (28.63%), Postives = 115/241 (47.72%), Query Frame = 2
Query:   59 SKAYSSGDITPRMVAERFITAVRESSNPPMKMSFFINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQPTVSLPKVSF 781
            S+   + +I P  V +    A+ E+ +P +K   F+  ++++ +K+A E      KG+    L G+ + +KD I      TT  +K L    P   ++  + +L    AIL+GK NM E   G S    ++    NP+D + +               L P +LG D GGS+R PAA CGVVG KPT+GR+   G++    ++  +G +   V+D  +V   I+G   +   +  +  V F
Sbjct:   12 SEMIKNNEIKPSEVVKDIYDAIEET-DPTIKS--FLALDKDNAIKKAKELDELQAKGQMEGKLFGIPMGIKDNIITKDVETTCASKMLEGFVPIY-ESTVMNKLHDENAILIGKLNMDEFAMGGSTETSYFKQTVNPFDHTAVPGGSSGGSAAAVAAGLVPFSLGSDTGGSIRQPAAYCGVVGMKPTYGRVSRFGLVAFASSLDQIGPITRNVKDNAIVLETISGVDRNDSTSAPVEDVDF 248          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_PSEA7 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Pseudomonas aeruginosa (strain PA7) GN=gatA PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 5.520e-21
Identity = 76/271 (28.04%), Postives = 125/271 (46.13%), Query Frame = 2
Query:   35 HRWTVLDYSKAYSSGDITPRMVAERFITAVRESSNPPMKMSFFINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHK-VRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQPTVSLPKVSFPLLKSATSISAIKLGKYDAWF 844
            H+ T+ + ++A +    +   +    +  +R+      +++ FI+  ++  + QA  +  R   GE  ++L G  IA KD        T+ G+K L   V P   DA  V +L   G + +GK NM E   G+S  + HYG  +NP+   ++               L P A G D GGS+R PAAL  + G KPT+GR+   G++    ++   G LA T ED  ++  A+ G  P    +V  P V   L      +S +++G    +F
Sbjct:    3 HQLTLAEIARALADKRFSAEELTRTLLGRIRQLDP---QLNSFISVTDDLAIAQAKAADERRANGENGALL-GAPIAHKDLFCTQGVRTSCGSKMLDNFVSPY--DATVVEKLAAAGTVTLGKLNMDEFAMGSSNQSSHYGAVKNPWSLDRVPGGSSGGSAAAVAARLLPAATGTDTGGSIRQPAALTNLTGIKPTYGRVSRWGMIAYASSLDQGGPLARTAEDCALMLGAMAGFDPKDSTSVEQP-VDDYLAALQKPLSGLRIGLPKEYF 266          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_PROM5 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Prochlorococcus marinus (strain MIT 9515) GN=gatA PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 5.520e-21
Identity = 72/265 (27.17%), Postives = 123/265 (46.42%), Query Frame = 2
Query:   56 YSKAYSSGDITPRMVAERFITAVRESSNPPMKMSFFINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHK-VRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQPTVSLPKVSFPLLKSATSISAIKLGKYDAWFN 847
            + K   SG+ + + +   F   + +S +P  K++ +    +E    Q+ +        E +  L G+ IA+KD I      T+  +K L   V P   ++    +L   G I +GKTN+ E   G+S     +G   NP+D  ++               LC  ++G D GGS+R PA+ CGVVG KPT+GR+   G++    ++  +G +  TV DA  +  +++G  P     +  P  ++ L     SI  +K+G  +  FN
Sbjct:    6 FRKEIKSGNASVKELINEFFLKI-DSLDP--KINAYTCLTKEIANSQSEQIDKLISNNEQLPPLAGIPIAIKDNICTKGVVTSCSSKMLQDFVSPY--ESTVSGKLWSSGGIFLGKTNLDEFAMGSSTETSVFGTTSNPWDTKRVPGGSSGGSAASVAAGLCAASIGSDTGGSIRQPASFCGVVGLKPTYGRVSRWGLIAFASSLDQIGPITNTVSDAAEILYSMSGKDPLDSTCLDKPVPNY-LSDLDKSIKGLKIGIIEECFN 264          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_NEIMA (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Neisseria meningitidis serogroup A GN=gatA PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 5.520e-21
Identity = 70/249 (28.11%), Postives = 119/249 (47.79%), Query Frame = 2
Query:   38 RWTVLDYSKAYSSGDITPRMVAERFITAVRESSNPPMKMSFFINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHK-VRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQPTVSLPKVSF 781
            ++T+   S    S  I+   +A  ++ A+ E  NP +  + +I  +++  L +A  +  R  +G   S L G+ +A KD    + + +   +K L   + P T  A  V +L   G + +G+TNM E   G++  N  YG A+NP++P  +               L P ALG D GGS+R PA+ CG+ G KPT+G +   G++    +    G +A T ED  ++  A+ G  P    ++   K  +
Sbjct:    3 QYTLKQASVLLQSKQISAVELASAYLAAIAEK-NPAL--NGYITIDQDKTLAEARAADERIAQGNA-SALTGIPVAYKDIFCQTGWRSACASKMLDNFISPYT--ATVVQKLLDEGMVTLGRTNMDEFAMGSTNENSFYGAAKNPWNPEHVPGGSSGGSAAVVAARLAPAALGSDTGGSIRQPASHCGITGIKPTYGTVSRFGMVAYASSFDQAGPMAQTAEDCAILLNAMAGFDPKDSTSLEREKEDY 245          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_MYCA9 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Mycobacterium abscessus (strain ATCC 19977 / DSM 44196) GN=gatA PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 5.520e-21
Identity = 69/203 (33.99%), Postives = 94/203 (46.31%), Query Frame = 2
Query:  161 FINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQPTVSLP 769
            F++   E  L  A +       G   S L GV +A+KD       PTT G+K L    P   DA    RLR  G  ++GKTNM E   G+S  N  YG  RNP+D  ++                 P+A+G D GGS+R PAAL   VG KPT+G +   G++    ++   G  A TV D  +++  I G  P    +V  P
Sbjct:   44 FLHVAGEQALAAAKDVDDAIAAGSVPSGLAGVPLALKDVFTTRDMPTTCGSKILENWVP-PYDATVTARLRGAGIPILGKTNMDEFAMGSSTENSAYGPTRNPWDVERVPGGSGGGSAAALAAFQAPLAIGTDTGGSIRQPAALTATVGVKPTYGTVSRFGLVACASSLDQGGPCARTVLDTALLHQVIAGHDPRDSTSVDEP 245          
The following BLAST results are available for this feature:
BLAST of FC878075 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GATA_VESOH5.520e-2129.49Glutamyl-tRNA(Gln) amidotransferase subunit A OS=V... [more]
GATA_TROWT5.520e-2129.96Glutamyl-tRNA(Gln) amidotransferase subunit A OS=T... [more]
GATA_TROW85.520e-2129.96Glutamyl-tRNA(Gln) amidotransferase subunit A OS=T... [more]
GATA_THETN5.520e-2128.05Glutamyl-tRNA(Gln) amidotransferase subunit A OS=T... [more]
GATA_THEP35.520e-2127.24Glutamyl-tRNA(Gln) amidotransferase subunit A OS=T... [more]
GATA_STAHJ5.520e-2128.63Glutamyl-tRNA(Gln) amidotransferase subunit A OS=S... [more]
GATA_PSEA75.520e-2128.04Glutamyl-tRNA(Gln) amidotransferase subunit A OS=P... [more]
GATA_PROM55.520e-2127.17Glutamyl-tRNA(Gln) amidotransferase subunit A OS=P... [more]
GATA_NEIMA5.520e-2128.11Glutamyl-tRNA(Gln) amidotransferase subunit A OS=N... [more]
GATA_MYCA95.520e-2133.99Glutamyl-tRNA(Gln) amidotransferase subunit A OS=M... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA35BB11RM1 IVIA1 Citrus clementina cDNA clone IC0AAA35BB11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878075 ID=FC878075; Name=FC878075; organism=Citrus clementina; type=EST; length=849bp
TCTGCCTCTGTCTTCAGAAAAGCAGCCGTTTTTCCATCGCTGGACTGTAT
TAGATTATTCAAAAGCCTACAGTTCCGGAGATATTACTCCTCGTATGGTA
GCAGAGCGGTTTATAACCGCAGTACGTGAGTCTTCAAACCCTCCAATGAA
AATGTCATTCTTCATTAACAACAATGAAGAAGATATTCTAAAGCAAGCTA
CAGAGTCGACTCTTCGGTATAAAAAAGGAGAGCCAATATCGGTTCTAGAT
GGAGTCCTAATTGCAGTCAAGGATGAAATTGATTGTTCTCCTTACCCAAC
TACAGGAGGCACCAAGTGGTTGCATAAAGTTAGACCTTGCACAGGTGATG
CATGCTGCGTTATGCGCCTCAGATTGTGCGGCGCCATACTTGTTGGGAAA
ACTAATATGCATGAGCTCGGGGCTGGAACAAGTGGGATAAATCCTCATTA
TGGGGTCGCTAGAAATCCATACGACCCCAGCAAAATCACTGGGGGTTCTT
CTAGTGGATCAGCAGCAGTGGTGGCTGCAGGATTGTGCCCTGTCGCCCTT
GGTGTTGATGGAGGAGGATCCGTGCGGATGCCTGCAGCTCTCTGTGGTGT
TGTTGGTTTTAAGCCAACTTTCGGGCGCATACCTCTTTCTGGTGTTCTTC
CACTGAACTGGACAGTAGGAATGGTTGGAATTTTAGCAGCCACTGTAGAA
GATGCATTGGTTGTTTATGCAGCTATTAATGGTCCACTTCCTTCCCAACA
GCCCACTGTTTCATTGCCAAAAGTATCGTTCCCACTGCTGAAGTCTGCAA
CATCAATATCAGCCATCAAATTGGGCAAGTATGATGCGTGGTTCAACGA
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